mRNA_C-tenellus_contig1175.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1175.1.1
Unique NamemRNA_C-tenellus_contig1175.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1175.1.1 vs. uniprot
Match: D8LBG4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBG4_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 4.480e-76
Identity = 122/161 (75.78%), Postives = 137/161 (85.09%), Query Frame = 1
Query:    1 MDRGRRAIPVANKACHERYVQKCQDHHRQKLATMKSTIDNQPPSSMRKTHVKNNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNQNHTLKYAKSLNREARKRELHKITRENQRILLAIQRSEPFYDHVKWAEEAQQNTLYMRNICQLPQALHPQD 483
            MDRGRRA+PV NKAC+ER+V+KCQD+HR +LA MK TID   PSSMRK   K NAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDN N T KY+KSLN+ ARK+ELHKIT ENQRIL AIQ+++PFYDH+KWAEEAQQN  YMRNIC +P  L  +D
Sbjct:    1 MDRGRRAMPVQNKACYERHVKKCQDNHRDRLAKMKPTIDCHAPSSMRKVATKTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNHNSTSKYSKSLNKGARKKELHKITTENQRILHAIQQADPFYDHIKWAEEAQQNEKYMRNICTMPVRLREED 161          
BLAST of mRNA_C-tenellus_contig1175.1.1 vs. uniprot
Match: A0A7S2V2P0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2P0_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.800e-56
Identity = 95/155 (61.29%), Postives = 122/155 (78.71%), Query Frame = 1
Query:    1 MDRGRRAIPVANKACHERYVQKCQDHHRQKLATMKSTIDNQPPSSMRKTHVKNNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNQNHTLKYAKSLNREARKRELHKITRENQRILLAIQRSEPFYDHVKWAEEAQQNTLYMRNICQLPQ 465
            MDRGRRA+PV NK C++RY++ CQ+ HR+KLA MK  +DN+PP   +  H++ N KK+Q+MEDR+A IERDNR+LLEKMS+IMR+   DN N +  YA SLN+EARKREL KITRENQ IL  IQ+SEP Y+H+KWAEEA++N  Y +NIC+  Q
Sbjct:    1 MDRGRRAMPVGNKTCNDRYIKMCQEKHRKKLADMKCRVDNKPPD--KPAHLRRNLKKEQLMEDRFATIERDNRILLEKMSYIMRRNQFDNTNESTAYAHSLNKEARKRELQKITRENQGILRRIQQSEPHYNHMKWAEEARRNEEYKKNICEYQQ 153          
BLAST of mRNA_C-tenellus_contig1175.1.1 vs. uniprot
Match: A0A836CD52_9STRA (KIAA1430-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD52_9STRA)

HSP 1 Score: 176 bits (445), Expect = 5.700e-53
Identity = 98/161 (60.87%), Postives = 122/161 (75.78%), Query Frame = 1
Query:    1 MDRGRRAIPVANKACHERYVQKCQDHHRQKLATMKSTIDNQPPSSMRKTHVKNNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGV----DNQNHTLKYAKSLNREARKRELHKITRENQRILLAIQRSEPFYDHVKWAEEAQQNTLYMRNICQLPQAL 471
            MDRGRRA+P  NKACHER+V+KCQD HRQ+L ++KSTIDN+PP ++R      NAKKQQ+MEDRYAQIERDNR+LLEKMS IMR        ++     +YAKSLNRE+RKREL +ITREN RIL AIQ SEP Y+  +W  EA+ +  Y++NIC+ P +L
Sbjct:    1 MDRGRRAMPTGNKACHERHVRKCQDLHRQQLTSIKSTIDNKPPKTLRAV-AGTNAKKQQLMEDRYAQIERDNRILLEKMSTIMRSRPTVALAESVEAQARYAKSLNRESRKRELQRITRENARILAAIQSSEPVYNSGQWEREARDHERYLKNICEYPVSL 160          
BLAST of mRNA_C-tenellus_contig1175.1.1 vs. uniprot
Match: A0A7S3USY4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USY4_HETAK)

HSP 1 Score: 174 bits (442), Expect = 2.350e-52
Identity = 93/154 (60.39%), Postives = 117/154 (75.97%), Query Frame = 1
Query:    1 MDRGRRAIPVANKACHERYVQKCQDHHRQKLATMKSTIDNQPPSSMRKTHVKNNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNQNHTLKYAKSLNREARKRELHKITRENQRILLAIQRSEPFYDHVKWAEEAQQNTLYMRNICQLP 462
            MDRGRRA+PV NK C++R VQ+ Q  HR+KLA MK  IDN  P   R  H++ N KK+Q+MEDR+A IERDNR+LLEKMS+IMR+   DN N + +YA SLN+EARKREL +ITRENQ IL  IQ++EP YDH+ W EEA++   Y+RNIC+ P
Sbjct:    1 MDRGRRAMPVGNKLCNQRAVQQAQQKHRKKLAEMKCRIDNTAPD--RPAHLRRNLKKEQLMEDRFATIERDNRILLEKMSYIMRRNQFDNVNESTQYAHSLNKEARKRELQRITRENQGILRRIQQAEPHYDHLAWEEEARKTEAYVRNICEFP 152          
BLAST of mRNA_C-tenellus_contig1175.1.1 vs. uniprot
Match: F0Y0R8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0R8_AURAN)

HSP 1 Score: 163 bits (413), Expect = 8.300e-49
Identity = 87/146 (59.59%), Postives = 111/146 (76.03%), Query Frame = 1
Query:   25 PVANKACHERYVQKCQDHHRQKLATMKSTIDNQPPSSMRKTHVKNNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNQNHTLKYAKSLNREARKRELHKITRENQRILLAIQRSEPFYDHVKWAEEAQQNTLYMRNICQLP 462
            P+ NK CH R+V+KCQ+ H++KL  MK +IDN  P   R  H++ N KK+Q+ME+RYA+IERDNRLLLEKMS+IMR   +DN N  ++YA SLNRE RKREL +ITRENQ IL  IQ +EP YDH+ WAE  +Q+  YM+NIC+LP
Sbjct:    1 PIGNKQCHARFVKKCQETHKKKLHEMKCSIDNHEPK--RHPHLRKNLKKEQLMEERYAEIERDNRLLLEKMSYIMRHSSLDNDNQ-MQYAHSLNREQRKRELQRITRENQNILGRIQAAEPTYDHLAWAEHEKQHEDYMKNICELP 143          
BLAST of mRNA_C-tenellus_contig1175.1.1 vs. uniprot
Match: A0A8K1CSC9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSC9_PYTOL)

HSP 1 Score: 162 bits (410), Expect = 7.250e-48
Identity = 88/155 (56.77%), Postives = 115/155 (74.19%), Query Frame = 1
Query:    1 MDRGRRAIPVANKACHERYVQKCQDHHRQKLATMKSTIDNQPPSSMRKTHVKNNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNQNHTLKYAKSLNREARKRELHKITRENQRILLAIQRSEPFYDHVKWAEEAQQNTLYMRNICQLPQ 465
            MDRGR+AIP  NK    +Y QKCQ+ HR KL T+KS+IDN  P   R  H++ N KK+Q+ E+RYA+IER+NR+LLEKMSHIM+   +DN+N ++ Y+ SLN+E+RKREL KIT ENQ IL  IQ  EP YDH++WAEEA++N  Y  NI + P+
Sbjct:    1 MDRGRKAIPTLNKHTDSKYYQKCQEIHRLKLNTIKSSIDNSEPH--RPLHLRKNLKKEQMKEERYAEIERENRILLEKMSHIMQNETLDNKNQSITYSHSLNKESRKRELQKITAENQAILRRIQMREPTYDHLQWAEEAKRNDQYAANIREYPE 153          
BLAST of mRNA_C-tenellus_contig1175.1.1 vs. uniprot
Match: K3WRK6_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WRK6_GLOUD)

HSP 1 Score: 160 bits (404), Expect = 6.260e-47
Identity = 88/150 (58.67%), Postives = 110/150 (73.33%), Query Frame = 1
Query:    1 MDRGRRAIPVANKACHERYVQKCQDHHRQKLATMKSTIDNQPPSSMRKTHVKNNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNQNHTLKYAKSLNREARKRELHKITRENQRILLAIQRSEPFYDHVKWAEEAQQNTLYMRNI 450
            MDRGR+AIP  NK    +Y QKCQ+ HR KL T+KS+IDN  P   R TH+K N KK+Q+ E+RYA+IER+NR+LLEKMSHIM+   +DN+N ++ Y+ SLN+  RKREL KIT ENQ IL  IQ  EP YDHV+W EEA++N  Y  NI
Sbjct:    1 MDRGRKAIPTLNKHTDSKYYQKCQEIHRSKLNTIKSSIDNSEPH--RPTHLKKNLKKEQMKEERYAEIERENRILLEKMSHIMQNETLDNKNQSIVYSHSLNKGLRKRELQKITSENQAILRRIQMREPTYDHVQWEEEAKKNERYAANI 148          
BLAST of mRNA_C-tenellus_contig1175.1.1 vs. uniprot
Match: A0A2D4CAA3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAA3_PYTIN)

HSP 1 Score: 158 bits (399), Expect = 2.720e-46
Identity = 89/155 (57.42%), Postives = 111/155 (71.61%), Query Frame = 1
Query:    1 MDRGRRAIPVANKACHERYVQKCQDHHRQKLATMKSTIDNQPPSSMRKTHVKNNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNQNHTLKYAKSLNREARKRELHKITRENQRILLAIQRSEPFYDHVKWAEEAQQNTLYMRNICQLPQ 465
            MDRGR+A+P  NK    RY QKCQ+ HRQKL T+KS+IDN  P   R  H++ N KK+Q+ E+RYA+IER+NR+LLEKMSHIM+   +DN+NH       LN+E RKREL KIT ENQ IL  IQ  EP YDH++WAEEA+QN  Y  NI + P+
Sbjct:    1 MDRGRKALPTLNKHTDSRYYQKCQEIHRQKLHTIKSSIDNSEPH--RPLHLRKNLKKEQLKEERYAEIERENRILLEKMSHIMQSETLDNKNH-------LNKEQRKRELQKITAENQAILRRIQMREPTYDHLQWAEEAKQNDKYALNIREYPE 146          
BLAST of mRNA_C-tenellus_contig1175.1.1 vs. uniprot
Match: A0A3R7GA00_9STRA (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=A0A3R7GA00_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.480e-45
Identity = 86/154 (55.84%), Postives = 111/154 (72.08%), Query Frame = 1
Query:    1 MDRGRRAIPVANKACHERYVQKCQDHHRQKLATMKSTIDNQPPSSMRKTHVKNNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNQNHTLKYAKSLNREARKRELHKITRENQRILLAIQRSEPFYDHVKWAEEAQQNTLYMRNICQLP 462
            MDRGR+AIP  NK    +Y QKCQ+ HR KL ++KS+IDN  P   R TH++ N KK+Q+ E+RYA IER+NR+LLEKMS IM+   +DN+N +L Y+ SLN+E RKREL KIT ENQ IL  IQ  EP YDH++W E+A++N  Y  NI + P
Sbjct:    1 MDRGRKAIPTLNKHTDSKYYQKCQEIHRAKLYSIKSSIDNSEPH--RPTHLRKNLKKEQMKEERYAAIERENRILLEKMSTIMQGESIDNKNQSLTYSHSLNKEQRKRELQKITSENQAILRRIQMREPTYDHMQWEEDAKKNERYAANIREYP 152          
BLAST of mRNA_C-tenellus_contig1175.1.1 vs. uniprot
Match: A0A3F2S3E4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3E4_9STRA)

HSP 1 Score: 157 bits (396), Expect = 9.220e-45
Identity = 87/154 (56.49%), Postives = 111/154 (72.08%), Query Frame = 1
Query:    1 MDRGRRAIPVANKACHERYVQKCQDHHRQKLATMKSTIDNQPPSSMRKTHVKNNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNQNHTLKYAKSLNREARKRELHKITRENQRILLAIQRSEPFYDHVKWAEEAQQNTLYMRNICQLP 462
            MDRGR+AIP  NK    +Y QKCQ+ HR KL ++KS+IDN  P   R TH++ N KK+Q+ E+RYA IER+NR+LLEKMS IM+   +DN+N +L Y+ SLN+E RKREL KIT ENQ IL  IQ  EP YDHV+W E+A++N  Y  NI + P
Sbjct:    1 MDRGRKAIPTLNKHTDSKYYQKCQEIHRAKLYSIKSSIDNSEPH--RPTHLRKNLKKEQMKEERYAAIERENRILLEKMSTIMQGESIDNKNQSLTYSHSLNKEQRKRELQKITSENQAILRRIQMREPTYDHVQWEEDAKKNERYAANIREYP 152          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1175.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBG4_ECTSI4.480e-7675.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V2P0_9STRA1.800e-5661.29Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CD52_9STRA5.700e-5360.87KIAA1430-like protein-domain-containing protein n=... [more]
A0A7S3USY4_HETAK2.350e-5260.39Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0Y0R8_AURAN8.300e-4959.59Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8K1CSC9_PYTOL7.250e-4856.77Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WRK6_GLOUD6.260e-4758.67Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A2D4CAA3_PYTIN2.720e-4657.42Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A3R7GA00_9STRA1.480e-4555.84Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A3F2S3E4_9STRA9.220e-4556.49Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1175contigC-tenellus_contig1175:620..1584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBG4
PFAMsKIAA1430
Model size507
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.34e-77
EggNOG OGs2ANFN@1|root,2RZE9@2759|Eukaryota
Ec32 ortholog descriptionKIAA1430 homologue
Ec32 orthologEc-27_004060.1
DescriptionKIAA1430 homologue
Cds size507
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.7439327-CDS-C-tenellus_contig1175:619..8021680789192.7439327-CDS-C-tenellus_contig1175:619..802Choristocarpus tenellus KU2346CDSC-tenellus_contig1175 620..802 +
1680789192.7600975-CDS-C-tenellus_contig1175:1031..12021680789192.7600975-CDS-C-tenellus_contig1175:1031..1202Choristocarpus tenellus KU2346CDSC-tenellus_contig1175 1032..1202 +
1680789192.7685363-CDS-C-tenellus_contig1175:1431..15841680789192.7685363-CDS-C-tenellus_contig1175:1431..1584Choristocarpus tenellus KU2346CDSC-tenellus_contig1175 1432..1584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1175.1.1prot_C-tenellus_contig1175.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1175 620..1584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1175.1.1

>prot_C-tenellus_contig1175.1.1 ID=prot_C-tenellus_contig1175.1.1|Name=mRNA_C-tenellus_contig1175.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=169bp
MDRGRRAIPVANKACHERYVQKCQDHHRQKLATMKSTIDNQPPSSMRKTH
VKNNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNQNHTLKYAKS
LNREARKRELHKITRENQRILLAIQRSEPFYDHVKWAEEAQQNTLYMRNI
CQLPQALHPQDAILEQVR*
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mRNA from alignment at C-tenellus_contig1175:620..1584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1175.1.1 ID=mRNA_C-tenellus_contig1175.1.1|Name=mRNA_C-tenellus_contig1175.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=965bp|location=Sequence derived from alignment at C-tenellus_contig1175:620..1584+ (Choristocarpus tenellus KU2346)
ATGGACAGGGGGAGACGTGCTATTCCGGTTGCAAACAAGGCGTGCCATGA GCGATACGTGCAAAAGTGTCAAGATCATCATAGACAAAAGCTGGCAACAA TGAAATCAACGATTGACAACCAGCCGCCTTCCAGCATGCGAAAAACGCAC GTCAAGAATAACGCAAAAAAGCAGCAAATAATGGTTAGGATTTGGAGGGA ACTCAGGAATAAGACCCAGGAGTTGAACGCAGAGCTAGCTAGACTTTGCC GTTGATTGAGGATTCCTGGCTTAATGTGTTGACATTCTCTGTTGCTTCAT TGCAGACATGACTCCAAGGATACCTGGAGTATGAGTATATGCGTCCGCAC AGGTATCTTCTAACTTCTAAATCTGACTGCACTAACCCTTTCCTTCTGCC ACTCTATGTCAGGAGGACCGGTATGCACAAATCGAACGAGACAACCGCCT TCTCCTGGAGAAGATGTCCCATATCATGCGTAAAGGAGGTGTTGATAACC AAAATCACACTTTGAAGTACGCGAAGTCACTCAACAGGGAGGCACGCAAA AGGGAACTGCACAAAATTACACGAGAGAACCAGGTGTGTTATATCATGAC CCATCCTTGTTTGCAAAAGAAGCACCCCAATACATCAAGTGAGATGTTTG AACATGCATGACTTGGTATCCTCGGCAGAGTGATGTGCTGCCATCAATTT GGTTTGGTACATTCACTGCTACTCTATCCTTACATTACCATTTATCTCCT TAATGTCCTTACAGTTTACAAGATTGACCTCACTCACTGCCTGTCTTACG TATACCAATCAGCGAATTCTCTTGGCAATTCAACGATCAGAGCCGTTCTA TGACCATGTGAAGTGGGCAGAGGAGGCCCAGCAGAACACTCTCTACATGC GCAACATATGTCAACTGCCACAAGCTCTTCATCCTCAAGATGCTATCCTC GAGCAGGTAAGATAA
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Coding sequence (CDS) from alignment at C-tenellus_contig1175:620..1584+

>mRNA_C-tenellus_contig1175.1.1 ID=mRNA_C-tenellus_contig1175.1.1|Name=mRNA_C-tenellus_contig1175.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=507bp|location=Sequence derived from alignment at C-tenellus_contig1175:620..1584+ (Choristocarpus tenellus KU2346)
ATGGACAGGGGGAGACGTGCTATTCCGGTTGCAAACAAGGCGTGCCATGA
GCGATACGTGCAAAAGTGTCAAGATCATCATAGACAAAAGCTGGCAACAA
TGAAATCAACGATTGACAACCAGCCGCCTTCCAGCATGCGAAAAACGCAC
GTCAAGAATAACGCAAAAAAGCAGCAAATAATGGAGGACCGGTATGCACA
AATCGAACGAGACAACCGCCTTCTCCTGGAGAAGATGTCCCATATCATGC
GTAAAGGAGGTGTTGATAACCAAAATCACACTTTGAAGTACGCGAAGTCA
CTCAACAGGGAGGCACGCAAAAGGGAACTGCACAAAATTACACGAGAGAA
CCAGCGAATTCTCTTGGCAATTCAACGATCAGAGCCGTTCTATGACCATG
TGAAGTGGGCAGAGGAGGCCCAGCAGAACACTCTCTACATGCGCAACATA
TGTCAACTGCCACAAGCTCTTCATCCTCAAGATGCTATCCTCGAGCAGGT
AAGATAA
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