mRNA_C-tenellus_contig11749.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11749.1.1
Unique NamemRNA_C-tenellus_contig11749.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11749.1.1 vs. uniprot
Match: D8LJV4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJV4_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 6.420e-61
Identity = 105/122 (86.07%), Postives = 112/122 (91.80%), Query Frame = 2 
Query:  638 MLSSVLKGYKPTFTYGSIFTGFAIDRVPPQKAHEVQLDPRVLKVVENRVVSSLSKELLIETLQTRYTFVNRDTGELYDVREIDRSMPNRYSMLPQNMSVPSKARQLLGINERQTHVPPKAAK 1003
            MLSSVLKGYKPTFTY SIFTGFA+DRVP QKA E++LD RVLKVVENRVVS+LSKELLIETLQT+YT VNRDTGELYDVREID SMP RYS+LP NM VPSKARQLLGINE+ THVPPKAAK
Sbjct:    1 MLSSVLKGYKPTFTYSSIFTGFAVDRVPMQKADEIRLDNRVLKVVENRVVSALSKELLIETLQTKYTVVNRDTGELYDVREIDTSMPYRYSVLPHNMRVPSKARQLLGINEQPTHVPPKAAK 122
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BLAST of mRNA_C-tenellus_contig11749.1.1 vs. uniprot
Match: A0A835ZJ29_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ29_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.870e-19
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 2 
Query:  551 RTPSSSGMAEKRIPGSYIVILQPTVTPYEMLSSVLKGYKPTFTYGSIFTGFAIDRVPPQKAHEVQLDPRVLKVVENRVVSSLSKELLIETL 823
            RT +++G        +YIVILQPTV P E+L++VLKG+KP F YG+IF GF++DR+ P    EV+LDPRVL VVE+R    LS+E+L+ETL
Sbjct:   11 RTQANNGNGSAATADNYIVILQPTVKPDEILNTVLKGHKPGFVYGTIFVGFSVDRLVPLLVLEVRLDPRVLTVVEDRASMGLSREVLMETL 101
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BLAST of mRNA_C-tenellus_contig11749.1.1 vs. uniprot
Match: A0A835ZFK3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFK3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.130e-8
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 2 
Query:  854 TGELYDVREIDRSMPNRYSMLPQNMSVPSKARQLLGINERQTHVPPKAAK 1003
            TGELYDVRE+D + P RYS+LP N+ VP KAR +LGIN ++T V  KAA+
Sbjct:    1 TGELYDVRELDGTAPYRYSILPSNLRVPRKARDILGINHKKTRVHSKAAR 50
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11749.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJV4_ECTSI6.420e-6186.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZJ29_9STRA2.870e-1954.95Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835ZFK3_9STRA7.130e-862.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11749contigC-tenellus_contig11749:2677..4730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1005
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_009810.1
Cds size495
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.6700025-UTR-C-tenellus_contig11749:2676..31841680789192.6700025-UTR-C-tenellus_contig11749:2676..3184Choristocarpus tenellus KU2346UTRC-tenellus_contig11749 2677..3184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.6812115-CDS-C-tenellus_contig11749:3184..34151680789192.6812115-CDS-C-tenellus_contig11749:3184..3415Choristocarpus tenellus KU2346CDSC-tenellus_contig11749 3185..3415 +
1680789192.6901762-CDS-C-tenellus_contig11749:3588..36751680789192.6901762-CDS-C-tenellus_contig11749:3588..3675Choristocarpus tenellus KU2346CDSC-tenellus_contig11749 3589..3675 +
1680789192.7090027-CDS-C-tenellus_contig11749:4553..47301680789192.7090027-CDS-C-tenellus_contig11749:4553..4730Choristocarpus tenellus KU2346CDSC-tenellus_contig11749 4554..4730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11749.1.1prot_C-tenellus_contig11749.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11749 3185..4730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11749.1.1

>prot_C-tenellus_contig11749.1.1 ID=prot_C-tenellus_contig11749.1.1|Name=mRNA_C-tenellus_contig11749.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=165bp
MANGQRGQRTSRPSRTPSSSGMAEKRIPGSYIVILQPTVTPYEMLSSVLK
GYKPTFTYGSIFTGFAIDRVPPQKAHEVQLDPRVLKVVENRVVSSLSKEL
LIETLQTRYTFVNRDTGELYDVREIDRSMPNRYSMLPQNMSVPSKARQLL
GINERQTHVPPKAAK
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mRNA from alignment at C-tenellus_contig11749:2677..4730+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11749.1.1 ID=mRNA_C-tenellus_contig11749.1.1|Name=mRNA_C-tenellus_contig11749.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2054bp|location=Sequence derived from alignment at C-tenellus_contig11749:2677..4730+ (Choristocarpus tenellus KU2346)
AATCAGAATAGAACTGTAGAAAAAATACGCTGTGTTATTGGGGGTAGACA
AATCCTCCTTTGAGACATCGACTCTTTCAGATCGAGTCATCAAAAACCGT
AGAAGGAAAGGGAGGAAGGAGGAAACAGAGACCACGGCAAGGAGGTTCTA
ACGCTGGAGTTGGGAAATCCGCTGTGTTTAAGTCATACGGGTTTGTGGCA
CCCAGGAGGGGTGGGAGTCCCTCATCACTCTTTATCCTTAGCTCACCTTG
CTAAAATTATTGATCATTGCTGTCACGTTCGGGGCTGGGAATAGCAGGAG
GAGGAACATTAGATTTGAAACAGGCAAGGAGGGAAGCTAGAGGTGGTGAG
GTTGCTCGGGTCTTCAACGGTGGGTAGAAGCTAGGGTTGGGTAGCCGGGC
CCCTTGCAAGCGTCTGACGAAGGTCATTATCCGGGGGGTCCGGCGAAAGG
TCAGGGTTGTGGTGGATTTTTACCTGCGTCTCTCCGTTTGCCTAACGGCA
AAGGGGTCATGGCCAATGGTCAGAGGGGGCAGCGAACCAGCCGCCCTTCT
CGTACTCCCAGCTCGAGCGGAATGGCAGAGAAACGGATTCCTGGTTCCTA
TATTGTCATTCTCCAGCCTACAGTTACCCCGTACGAAATGCTGTCGTCAG
TTCTGAAGGGCTACAAGCCCACGTTTACTTATGGGTCCATCTTTACGGGG
TTCGCGATTGACAGGGTGCCACCCCAAAAGGCACATGAGGTGAGGAATGG
AGATGCCACATATTTAATCTTTTATGGATTAAATTGAACGCTCTGGACTT
GCGTGTGCGGAAGTTGATGTTTTATTTCTGCAAAGTTCGGGCGGGAAGTA
GTAAGGCGGGGTTATGTTGTCCAAACCTACACCCCCCCATTGTCATGCAT
ACACTACGTCAGGTGCAACTCGACCCTCGAGTTCTCAAGGTCGTCGAGAA
TCGCGTGGTGAGCTCTCTCAGCAAGGAGCTTCTCATCGAAACATTACAGG
TGACCGGACATGTTACGCGTTCCTGGGAGGTCCAAATTTTCGGCGAAGCC
ACGCGCCCTGTCCTCATTATAAGTGGTCATCTCCTTAACATCTGTTTTAA
TGCTCTGAAACAATATGACTTCGTGCGTCACCATGCTCTAAATATTATTG
CCAGATCTACTTGCGTAGTTGTATCCAAAAGGTCCCTCTCGGGTCGCACC
TCCTCCCCACTGGCTTTCTTCTCCCTTTCCTCCCAATCTAAAGCGGAACA
ACGATACCGAAAATTGATCCGTCCTTTAATTACTGTACGCGTCTCGCTAG
CTGTGGGGCATGGGGGCTTACCTAGGAGGTGGGCAATGTTCCAGTCTTCA
CCTCCGTGTACCATTACCCCACTCAAAACTAGTCAACCCTGCAGTTTGTA
GAAACCATGTATACTTGTGTCACGTATCAATTTCTCTCACTCGCTCCCCA
ACCTTAGATGTGATTCACATAGGATTGTTAAAGACCTCGGTTTTTATGTC
ATCACTCTCACCATTTCATTTCCGAATTTGCTATGAAATCAGGATGTCCT
CCTCGACAGAGTAATTGATGGATTGTAGTGTTTTTGATGCCTCCTGCTGT
TTCTATTAGGGTCATCGGATTAGTCCTCCCCAAATCTTGCAAGTTTTTTA
TGACACTTTACTTTGGTATGGTGAGTGATCCTACAGAGAGTATTCTAGGA
GCACTACCCACTCTTAGAGAGGAAGAAAACCCAATTCATGCACATCGTGA
ACCAGCCAACACGAAGTGAAATTTCTGTCACACCTTAGCCTACATCTTGT
CACCGTCTCTGAACTTACTGCCCCCTCCTGCTGCCCTGCCTTGTGGGTTT
CAATATGCCCTAACCCTAACCAAACAGACGAGATACACGTTTGTTAATAG
AGATACAGGCGAGCTCTATGACGTACGAGAGATCGATAGGTCCATGCCAA
ATCGCTACTCAATGCTGCCACAGAACATGAGTGTTCCTAGCAAAGCCCGT
CAATTGCTGGGGATCAATGAGCGGCAGACGCACGTTCCACCCAAAGCAGC
CAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig11749:2677..4730+

>mRNA_C-tenellus_contig11749.1.1 ID=mRNA_C-tenellus_contig11749.1.1|Name=mRNA_C-tenellus_contig11749.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=495bp|location=Sequence derived from alignment at C-tenellus_contig11749:2677..4730+ (Choristocarpus tenellus KU2346)
ATGGCCAATGGTCAGAGGGGGCAGCGAACCAGCCGCCCTTCTCGTACTCC
CAGCTCGAGCGGAATGGCAGAGAAACGGATTCCTGGTTCCTATATTGTCA
TTCTCCAGCCTACAGTTACCCCGTACGAAATGCTGTCGTCAGTTCTGAAG
GGCTACAAGCCCACGTTTACTTATGGGTCCATCTTTACGGGGTTCGCGAT
TGACAGGGTGCCACCCCAAAAGGCACATGAGGTGCAACTCGACCCTCGAG
TTCTCAAGGTCGTCGAGAATCGCGTGGTGAGCTCTCTCAGCAAGGAGCTT
CTCATCGAAACATTACAGACGAGATACACGTTTGTTAATAGAGATACAGG
CGAGCTCTATGACGTACGAGAGATCGATAGGTCCATGCCAAATCGCTACT
CAATGCTGCCACAGAACATGAGTGTTCCTAGCAAAGCCCGTCAATTGCTG
GGGATCAATGAGCGGCAGACGCACGTTCCACCCAAAGCAGCCAAG
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