mRNA_C-tenellus_contig11744.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11744.1.1
Unique NamemRNA_C-tenellus_contig11744.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11744.1.1 vs. uniprot
Match: D7FUM4_ECTSI (HTH_OrfB_IS605 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM4_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 1.950e-46
Identity = 96/173 (55.49%), Postives = 115/173 (66.47%), Query Frame = 3 
Query:  447 MGKRTIELLPTDEQRQTLQKWFGVVRWTHNRAVDALRRDPYASKGSLWAAVAAAESDHAWVSAVPRAVRDDTVRELVEQFNALPRRGGV-------------------EDGLKYRTRKDRLERVVVRASGYYGGIPYPDYFGRTPLAASEILPERLSGDGVLVRSCERFFLCI 908
            +G +T+ELLPT +QRQTLQKWFGVVRW HNRAVDALR D   S  SL AAVA +ES+H W +AVP A+RD TV +LV   +   R   V                      LKYRTRKDRLE++V+RA G+  GIPYPDYFG  PLA+S  +P+RL  D +LVRS ERF+LCI
Sbjct:  225 LGYQTLELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRADGFQYGIPYPDYFGYAPLASSVPIPDRLPSDAILVRSTERFYLCI 397
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11744.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUM4_ECTSI1.950e-4655.49HTH_OrfB_IS605 domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11744contigC-tenellus_contig11744:880..4017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4950.XP_003678658.1
PFAMsHTH_OrfB_IS605,OrfB_IS605,OrfB_Zn_ribbon
Model size2517
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.57e-09
EggNOG OGsCOG0675@1|root,2S61S@2759|Eukaryota,3A84T@33154|Opisthokonta,3P6H3@4751|Fungi,3R2Z2@4890|Ascomycota,3RW77@4891|Saccharomycetes,3S28D@4893|Saccharomycetaceae
Ec32 ortholog descriptionTransposase, putative, helix-turn-helix domain
Ec32 orthologEc-26_002150.1
DescriptionProbable transposase
Cds size753
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.580065-UTR-C-tenellus_contig11744:879..10761680789192.580065-UTR-C-tenellus_contig11744:879..1076Choristocarpus tenellus KU2346UTRC-tenellus_contig11744 880..1076 +
1680789192.6351576-UTR-C-tenellus_contig11744:2450..40171680789192.6351576-UTR-C-tenellus_contig11744:2450..4017Choristocarpus tenellus KU2346UTRC-tenellus_contig11744 2451..4017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.597217-CDS-C-tenellus_contig11744:1076..13851680789192.597217-CDS-C-tenellus_contig11744:1076..1385Choristocarpus tenellus KU2346CDSC-tenellus_contig11744 1077..1385 +
1680789192.6081681-CDS-C-tenellus_contig11744:1484..17561680789192.6081681-CDS-C-tenellus_contig11744:1484..1756Choristocarpus tenellus KU2346CDSC-tenellus_contig11744 1485..1756 +
1680789192.6190667-CDS-C-tenellus_contig11744:2278..24501680789192.6190667-CDS-C-tenellus_contig11744:2278..2450Choristocarpus tenellus KU2346CDSC-tenellus_contig11744 2279..2450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11744.1.1prot_C-tenellus_contig11744.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11744 1077..2450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11744.1.1

>prot_C-tenellus_contig11744.1.1 ID=prot_C-tenellus_contig11744.1.1|Name=mRNA_C-tenellus_contig11744.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=251bp
MSNSGGLTDFWSEPWTASTWSLWSSQGAASAGLRALNWRKGAEIDPWSNN
WGSTLGPGAPLRETLKGNGGQPFGRECETAPRTMGKRTIELLPTDEQRQT
LQKWFGVVRWTHNRAVDALRRDPYASKGSLWAAVAAAESDHAWVSAVPRA
VRDDTVRELVEQFNALPRRGGVEDGLKYRTRKDRLERVVVRASGYYGGIP
YPDYFGRTPLAASEILPERLSGDGVLVRSCERFFLCIPTFEKENKWSATA
*
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mRNA from alignment at C-tenellus_contig11744:880..4017+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11744.1.1 ID=mRNA_C-tenellus_contig11744.1.1|Name=mRNA_C-tenellus_contig11744.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3138bp|location=Sequence derived from alignment at C-tenellus_contig11744:880..4017+ (Choristocarpus tenellus KU2346)
CCCCCTGGTCCCTCCCCCCCAATCAATTTGAAAATTGAGATATGACTTCT
ATTGTATCACCAACAAGGGCAGACAACAACAAGATAGATTAGTGTTGTGA
GTTTCGTGAGTACCCTTGCCACTAGCCTTGTCGGTAACTTTGGCACTCTC
CCATCTGGAGTACCCTAGGATTCGGTGCGTTGTAATCGCAACTAGGAATG
TCGAACAGTGGTGGTTTGACAGATTTTTGGAGTGAGCCCTGGACAGCGTC
AACTTGGAGCCTTTGGTCCAGCCAAGGAGCTGCATCTGCTGGTCTGAGGG
CCCTGAACTGGAGAAAAGGTGCAGAAATTGACCCGTGGTCTAACAACTGG
GGAAGCACGCTTGGACCTGGAGCACCCTTGCGAGAGACTCTCAAGGGAAA
TGGAGGGCAACCTTTTGGGCGGGAATGCGAGACCGCGCCCAGGACAATGG
GGAAGCGCACAATTGAGCTCCTCCCCACAGACGAACAGCGTCAGACGCTC
CAAAAGGTGCGGGAGTGTACGTTAGAATGTGCTGTTCGATGGACCTTTCT
TTTGAACTCTCTCAGCTAATTTTTGCTCTCACATTCCCCCAACTTGATTC
TCCAGTGGTTTGGTGTTGTACGCTGGACCCATAACCGGGCCGTGGACGCT
CTCCGCCGCGATCCCTATGCGAGTAAGGGAAGCCTTTGGGCTGCAGTTGC
CGCGGCGGAATCGGATCATGCGTGGGTCTCTGCTGTTCCCAGAGCTGTCC
GCGATGATACTGTCCGAGAACTTGTGGAGCAATTCAATGCCTTGCCAAGA
CGGGGAGGAGTTGAAGACGGGCTCAAGTACCGAACTAGAAAGGACCGTCT
AGAACGGGTGGTTGTACGAGCATCGGGGTAAGTGACGGTCAGGAATTTTG
TGTTAGTAAGTAGAGAGGTCTGAGAATGTTTCAGGTTTTATTGTGCCTCC
AAGCCAGGATGTACAACATACGGGGAGGAGAAGGTTTAACCAACAGTATT
CGGTAGGCAATCTTCGCTTAATCCTAAGTGCTCTTCATGATATAGGTCTT
GGATCTGGGACAGCAACTTTTAAACTGAGGTACTACTGCTAACAAAATGA
TTTTACACAGCAGTGCCAACAATGCGGCGATATATTGCTCTCGCTCAGTA
TGGGTGAGGAGTGAAGTTCTGTGTTGCAGCGGTGCTCTTAGAATCTTAAG
TGGCAATGTAAAGCTCTACCTCATACAGACCAACAATAAAGTGCTATATT
GGGCCTGTTTTGTTGCTCAGGGATTAGGCAGCACATGTGTTAAGATGCCC
TTTGTGGCGCTGATATTGTGCCGTTTTCTTTTCTGAATCCCTACTTTCGC
AACAAGTACTACTACAACACCTTTTTTCCTGCCTCTCCACTTTTGTCAGG
TACTACGGGGGTATTCCTTATCCTGACTACTTTGGTCGAACACCATTGGC
TGCTTCGGAAATTCTCCCAGAGCGACTGTCTGGAGACGGTGTCCTAGTCC
GTAGCTGTGAGCGCTTCTTCCTGTGCATTCCTACCTTCGAGAAGGAAAAC
AAATGGTCGGCGACAGCTTGAATGTACAATTGTTCAGATAGCAGGGAGTG
ATTTAGGGGATGCCTGATGAAGCTATCACTCGACTTGATAGTGGACACTG
CCCTCCTGGCTGGCACTCTTCCCTTTTCCCCCTCCCACTACAGTCCATAT
ATGTTTGTTGTTGCTCTTCTCCTGTTTTTTCGTATATTTCTCTCTGGTTT
GTTCCTTCTTGGTCACATTGTTTCAAATATTATTTCAAGCTTTCGTCCTC
TATCAGAGAGGTGAAGCGTCTTGTGCATGCGCTTGCTGAGCATTCCCCAC
CTTGAGTGTGCATACAGGTGGGGTAGGGGAACAGGGGGGGGTGAAGGGAA
GGCAAGAGAAAATACTGGAGAGCATAGCTGCACAATTAAGTCCTGGTGTC
TTATATGACATAAAAGTGAGGCAGGGAGATAGATGGAGAAAGCCTTGCAG
TGTGTAGGGATGTCAGTGGCAGGCCTTATCCAATATGACCCTGCAATCTG
CCAAAGTGAATATACTGCTTGTGAGGAAGGATTTGTTTGACAAACATAGG
ATCGTTCACGACCTTTTACTTAGCTCTGGTCGGTGTTTATTTGCTGTAGT
ACAGTAACATTTTCCTTGTGTGCGCATCTCGTGCTGGGACCCTTTTTTTC
TGCATGTGTCTTATGTTATTTATTGTATAGGCAAGCGGGGGATGCATATT
TTGGAGGTTAACAGCGGGGTTATTTTGATTGATGCATAGGGTTAGGGTTC
GCGTCTTGCGAAGTATAGAGAATTAGTCCTGGTGTAGAATCAGGACTAAT
TTCCTGTAGACACATTCTCTGCTTCTTCTACCCACTGTACTGATACCTAC
CAGGAAGGTTGTGGTTGGTCAGAGTGTTGTATGGATCGAACGGTAATTGT
AAGTGATAGTGTGACAGGAGAAGATTGGATAGAATATTGTTAGTTGTAGT
ATCAAGGGGTGGAGTGGTCAATGTATGAAGTGATGGATAGATAGGACCAT
GGACAGGCGCACCCATTTCTGCGTGATTTTTTTTGTTGTTGCTTGGAAAG
CATTGCACAACAAACTTTGTAACTATTTCAACATCATGGATAGTGAGCCG
TTGTGTTTGCCAGATAGTAGCATAGGCACATATGATGCTAATCTGATCTA
CAGAGCATGTTGAATGGTGCATCCACTGCATTCATACCACAAAAGTTGGG
GCTATGGAGAAGAGGGTTGTAGGTGGGTTTTTGTGTATTCCACAACTGCA
TCAAGTCTGTCAATTCGACCTACCTTTCAGTGCTTTGAGATTTAAATTCA
TTCAAGTGCAGCATATTTCAAGAAATGAAAAGATCGAGGAGACAGTACAG
TGAAGGGAAATTATTGCTCTTCCCTCTCACCATGACACCGTCTCCTGGTC
TCTCTTCCTTCACGCTCTTGGAGTAGAGTAGCAGTGAGCAAGGTGGGTAG
CTCGGGGTATTCTGATGGTGACAAACAGGTCCTGAAGTCCTTATGTGGGT
GGCAGTGCGCACTTTTGATGTTGCTTGTCAGGTGAAGATAGCTAACGTAT
TTGGCAGGTGGCAGCAGTGTATTGAGGTATCAGAGGGT
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Coding sequence (CDS) from alignment at C-tenellus_contig11744:880..4017+

>mRNA_C-tenellus_contig11744.1.1 ID=mRNA_C-tenellus_contig11744.1.1|Name=mRNA_C-tenellus_contig11744.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=753bp|location=Sequence derived from alignment at C-tenellus_contig11744:880..4017+ (Choristocarpus tenellus KU2346)
ATGTCGAACAGTGGTGGTTTGACAGATTTTTGGAGTGAGCCCTGGACAGC
GTCAACTTGGAGCCTTTGGTCCAGCCAAGGAGCTGCATCTGCTGGTCTGA
GGGCCCTGAACTGGAGAAAAGGTGCAGAAATTGACCCGTGGTCTAACAAC
TGGGGAAGCACGCTTGGACCTGGAGCACCCTTGCGAGAGACTCTCAAGGG
AAATGGAGGGCAACCTTTTGGGCGGGAATGCGAGACCGCGCCCAGGACAA
TGGGGAAGCGCACAATTGAGCTCCTCCCCACAGACGAACAGCGTCAGACG
CTCCAAAAGTGGTTTGGTGTTGTACGCTGGACCCATAACCGGGCCGTGGA
CGCTCTCCGCCGCGATCCCTATGCGAGTAAGGGAAGCCTTTGGGCTGCAG
TTGCCGCGGCGGAATCGGATCATGCGTGGGTCTCTGCTGTTCCCAGAGCT
GTCCGCGATGATACTGTCCGAGAACTTGTGGAGCAATTCAATGCCTTGCC
AAGACGGGGAGGAGTTGAAGACGGGCTCAAGTACCGAACTAGAAAGGACC
GTCTAGAACGGGTGGTTGTACGAGCATCGGGGTACTACGGGGGTATTCCT
TATCCTGACTACTTTGGTCGAACACCATTGGCTGCTTCGGAAATTCTCCC
AGAGCGACTGTCTGGAGACGGTGTCCTAGTCCGTAGCTGTGAGCGCTTCT
TCCTGTGCATTCCTACCTTCGAGAAGGAAAACAAATGGTCGGCGACAGCT
TGA
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