mRNA_C-tenellus_contig11743.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11743.1.1
Unique NamemRNA_C-tenellus_contig11743.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11743.1.1 vs. uniprot
Match: D7G0Q0_ECTSI (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Q0_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 8.530e-31
Identity = 59/78 (75.64%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:    1 GARSRSWRQVKVSTN----SSCEQLPGPRSGAASVVVGNKMYMFGGYGGSGRLDDFYEFNFESRTWKEVKCQGPSPGV 222
            G+RSRSWRQVK +      S  +Q+PGPRSGAASVVVGNK++MFGGYGGSGRLDDF+EF+FESR WKEV CQGPSPGV
Sbjct:    5 GSRSRSWRQVKANALPPGVSVGDQVPGPRSGAASVVVGNKLFMFGGYGGSGRLDDFWEFDFESRIWKEVHCQGPSPGV 82
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BLAST of mRNA_C-tenellus_contig11743.1.1 vs. uniprot
Match: A0A2R5GK91_9STRA (Kelch domain-containing protein 10 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GK91_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.630e-24
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   13 RSWRQVKVSTNSSCEQLPGPRSGAASVVVGNKMYMFGGYGGSGRLDDFYEFNFESRTWKEVKCQGP---SPGVRENNGVVEYQGSLYLFGGYN 282
            RSWR++           PGPRSGAASVV+G+K+Y+FGGYGG  RLDDFYE+ F SR W+ ++   P   +PG RENNG V +   LYLFGGYN
Sbjct:   47 RSWRRLPC-----VGDTPGPRSGAASVVLGSKLYVFGGYGGEKRLDDFYEYCFISRVWRRIELDEPRAQTPGPRENNGFVTFGKCLYLFGGYN 134
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BLAST of mRNA_C-tenellus_contig11743.1.1 vs. uniprot
Match: A0A7S2PEB9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PEB9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 7.200e-24
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = 1 
Query:   19 WRQVKVSTNSSCEQLPGPRSGAASVVVGNKMYMFGGYGG-SGRLDDFYEFNFESRTWKEVKCQGP-SPGVRENNGVVEYQGS-LYLFGGYN 282
            W ++ +S +S    +P PRSGAASVVV  ++YMFGGYGG +GRLDDFY+F+F+S TW EV+      PG RENNGVV    S +YLFGGYN
Sbjct:   77 WSRMALSPHS---PIPPPRSGAASVVVKGRLYMFGGYGGGTGRLDDFYQFSFDSNTWSEVEVLSDVKPGCRENNGVVIGDASRVYLFGGYN 164
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BLAST of mRNA_C-tenellus_contig11743.1.1 vs. uniprot
Match: F0YL40_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL40_AURAN)

HSP 1 Score: 103 bits (256), Expect = 9.420e-24
Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:   13 RSWRQVKVSTNSSCEQLPGPRSGAASVVVGNKMYMFGGYGGSGRLDDFYEFNFESRTWKEVK-CQGPSPGVRENNGVVEYQGSLYLFGGYN 282
            R W QV  S +S     P PRSGAASV+V   MY+FGGYGG GRLDDF+ F+ ++  W  V+   G +PG+RENNG++E++G LYLFGGYN
Sbjct:    5 RRWSQVNSSGSS-----PSPRSGAASVIVDAHMYIFGGYGGGGRLDDFHCFDLDNTRWSCVEPSSGLTPGMRENNGLIEFRGKLYLFGGYN 90
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BLAST of mRNA_C-tenellus_contig11743.1.1 vs. uniprot
Match: A0A7S0C9B3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9B3_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.250e-23
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:   58 QLPGPRSGAASVVVGNKMYMFGGYGG-SGRLDDFYEFNFESRTWKEVKCQGPS-PGVRENNGVVEYQGS-LYLFGGYN 282
            ++P PRSGAASVVV  ++YMFGGYGG +GRLDDFY F+F++ TW+EV+      PG RENNGVV    S +YLFGGYN
Sbjct:    6 KVPPPRSGAASVVVKGRLYMFGGYGGGTGRLDDFYSFSFDTCTWEEVQVLSKEKPGCRENNGVVIGDSSRVYLFGGYN 83
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BLAST of mRNA_C-tenellus_contig11743.1.1 vs. uniprot
Match: A0A7S2EC03_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EC03_TRICV)

HSP 1 Score: 94.7 bits (234), Expect = 6.090e-23
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:   61 LPGPRSGAASVVVGNKMYMFGGYGG-SGRLDDFYEFNFESRTWKEVKC-QGPSPGVRENNGVVEYQGS-LYLFGGYN 282
            LP PRSGAASVVV  ++YMFGGYGG +GRLDDFY F+F++  W+EV+      PG RENNGVV    S +YLFGGYN
Sbjct:   31 LPPPRSGAASVVVKGRLYMFGGYGGGTGRLDDFYSFSFDTCAWEEVRVLSSEKPGCRENNGVVIGDSSRVYLFGGYN 107
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BLAST of mRNA_C-tenellus_contig11743.1.1 vs. uniprot
Match: A0A7J6SJ80_PEROL (Leucine-zipper-like transcriptional regulator 1 (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SJ80_PEROL)

HSP 1 Score: 93.6 bits (231), Expect = 2.850e-22
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:   13 RSWRQVKVS-TNSSCEQLPGPRSGAASVVVGNKMYMFGGYGGSGRLDDFYEFNFESRTWKEVKCQGPSPGVRENNGVVEYQGSLYLF 270
            R WR V+   T     +LPG RSGAASVV  + +Y+ GGYGGSGRLDD ++F+F +R W +V  +G +P  RENNG V  + ++YLF
Sbjct:   71 RRWRPVQYGCTAEKAMELPGDRSGAASVVYNDALYVLGGYGGSGRLDDLFKFDFNTRLWSQVHTKGETPTGRENNGAVVIKNNMYLF 157
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BLAST of mRNA_C-tenellus_contig11743.1.1 vs. uniprot
Match: A0A6V2E5J1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2E5J1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.890e-22
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:   19 WRQVKVSTNSSCEQLPGPRSGAASVVVGNKMYMFGGYGG-SGRLDDFYEFNFESRTWKEVKC-QGPSPGVRENNGVVEYQGS-LYLFGGYN 282
            W +V  +  S+   LP PRSGAASVVV  ++YMFGGYGG +GRLDDFY F+F++ TW+EV       PG RENNGVV    S +YLFGGYN
Sbjct:   90 WSRVTPAAGSA---LPPPRSGAASVVVKGRLYMFGGYGGGTGRLDDFYSFSFDTCTWEEVNVLSAEKPGCRENNGVVIGDSSRVYLFGGYN 177
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BLAST of mRNA_C-tenellus_contig11743.1.1 vs. uniprot
Match: A0A7S2R788_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R788_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 5.060e-22
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:   13 RSWRQVKVSTNSSCEQLPGPRSGAASVVVGNKMYMFGGYGGSGRLDDFYEFNFESRTWKEVKCQGP-SPGVRENNGVVEYQGSLYLFGGYN 282
            RSWR++  +       +PGPRSGAAS+V G K+Y+FGGYGG  RL DFY++ F SR W  V   G   PG RENNG V +   LYLFGGY+
Sbjct:   78 RSWRKLVCAG-----MMPGPRSGAASIVYGTKLYIFGGYGGESRLGDFYQYCFLSRCWSVVMTTGEICPGPRENNGFVSFGSCLYLFGGYD 163
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BLAST of mRNA_C-tenellus_contig11743.1.1 vs. uniprot
Match: A0A7S2GQF3_9STRA (Hypothetical protein n=6 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2GQF3_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 9.530e-22
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:   19 WRQVKVSTNSSCEQLPGPRSGAASVVVGNKMYMFGGYGG-SGRLDDFYEFNFESRTWKEVKC-QGPSPGVRENNGVVEYQGS-LYLFGGYN 282
            W +V  +  S+   LP PRSGAASVVV  ++YMFGGYGG +GRLDDFY F+F++ TW+EV       PG RENNGVV    S +YLFGGYN
Sbjct:   50 WSRVTTAAGSA---LPPPRSGAASVVVKGRLYMFGGYGGGTGRLDDFYSFSFDTCTWEEVNVLSAEKPGCRENNGVVIGDSSRVYLFGGYN 137
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11743.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Q0_ECTSI8.530e-3175.64BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A2R5GK91_9STRA1.630e-2455.91Kelch domain-containing protein 10 n=1 Tax=Hondaea... [more]
A0A7S2PEB9_9STRA7.200e-2458.24Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
F0YL40_AURAN9.420e-2456.04Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0C9B3_9STRA3.250e-2362.82Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2EC03_TRICV6.090e-2363.64Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7J6SJ80_PEROL2.850e-2250.57Leucine-zipper-like transcriptional regulator 1 (F... [more]
A0A6V2E5J1_9STRA2.890e-2258.24Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2R788_9STRA5.060e-2253.85Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S2GQF3_9STRA9.530e-2258.24Hypothetical protein n=6 Tax=Lithodesmiaceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11743contigC-tenellus_contig11743:1..2219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009041123.1
PFAMsKelch_1,Kelch_3,Kelch_4,Kelch_5,Kelch_6
Model size282
Max annot lvl2759|Eukaryota
KEGG koko:K20285
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.54e-24
EggNOG OGsKOG0379@1|root,KOG0379@2759|Eukaryota
Descriptionnitrile biosynthetic process
Cds size282
COG categoryP
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.4511967-CDS-C-tenellus_contig11743:0..1101680789192.4511967-CDS-C-tenellus_contig11743:0..110Choristocarpus tenellus KU2346CDSC-tenellus_contig11743 1..110 -
1680789192.462624-CDS-C-tenellus_contig11743:1474..15381680789192.462624-CDS-C-tenellus_contig11743:1474..1538Choristocarpus tenellus KU2346CDSC-tenellus_contig11743 1475..1538 -
1680789192.4769998-CDS-C-tenellus_contig11743:2111..22191680789192.4769998-CDS-C-tenellus_contig11743:2111..2219Choristocarpus tenellus KU2346CDSC-tenellus_contig11743 2112..2219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11743.1.1prot_C-tenellus_contig11743.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11743 1..2219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11743.1.1

>prot_C-tenellus_contig11743.1.1 ID=prot_C-tenellus_contig11743.1.1|Name=mRNA_C-tenellus_contig11743.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=94bp
GARSRSWRQVKVSTNSSCEQLPGPRSGAASVVVGNKMYMFGGYGGSGRLD
DFYEFNFESRTWKEVKCQGPSPGVRENNGVVEYQGSLYLFGGYN
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mRNA from alignment at C-tenellus_contig11743:1..2219-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11743.1.1 ID=mRNA_C-tenellus_contig11743.1.1|Name=mRNA_C-tenellus_contig11743.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2219bp|location=Sequence derived from alignment at C-tenellus_contig11743:1..2219- (Choristocarpus tenellus KU2346)
GGTGCGCGATCTAGATCATGGCGACAAGTTAAGGTGTCCACAAACTCCTC
CTGTGAGCAGCTACCAGGTCCACGCAGCGGGGCAGCATCTGTAGTTGTTG
GGAACAAGGTGAGGAAGATTTAGTACATACTGTCTGCCTATGGAGGTGGG
CTGTGTGGGGTGCGAGACAGTGGCAATAGCACATTCCTTCCGTGCTATAA
CTTCTCTGCCCCATTGTTCAAGCTCCCTTTCCCCACCTTAGTTTCCAAGG
TGATAGTGACTGCCGTCGAAGTGCCCACCATCCGTTACGCAACCCTGCTG
TTCCACCTTCCCGTTACTCCTCGCCAAATCAATTGGTTCTTTCAATTCTT
GAAAGGTTACTTTACTGTACCCTATTGTTGCAGGGTTTTCCTTTCGTGTG
CACATTTCCCTCTTTCATCCACTCGACCATTTAAACCCTGCCTGTTTTTT
TCCCTTTGCTGCATCAAACACAACGACACCCTCTTCTTTCCTTGTCGTAG
ACCCTTCTACCCCACCAACAATGTTGTCAACAAGAGACCCCAACCTCCTC
TCAAAATGCTGCACATGAAAGGTTTCCCCGATTACACCCATTCATCGATA
CCCTCCTCCTGACCGTGCAACTATGTCCACATTGAAACTTGTCAACCCCT
CCCCTTACCAATGGATATGATACTGTCTCAGATGTACATGTTTGGTGGAT
ATGGGGGGAGCGGAAGACTGGACGACTTTTATGAGTTCAATTTCGGTGGG
TTGGGACTTGGGGTATCTACCAGATTGAGGGCAGGGCGGGGGGCAACCCA
AAGCATGTGACATGGCTGCCTAAAATATCTTGTGATGCTTTATTGTTGTT
AACCTTGATCCAGTCTGTTCAAGCCTTGGAAGAACATGGGAAGCAACGTC
TATAGTGTCTTGAGGTCGTTCATCAGAATGCGATTTCATTCTGATTTTAT
CGTACGGTTGGGGAGCATTACCTCATCGCTCTGTAAGCGGTGATGGTTCC
TCCCTGTCTTTCAGGGTACGCCTTCCATGGAAGAGAGTTTTTTTTGCGCT
TGCACCTGATGCATATACAAGAGAAAGGGAGCCACAAGCTCTTCACTCGG
CTTTGCATTGGGAACTCTTGTGTTAGGGGGCTTGGTCGATTGTGTTTGAC
GTCAATTATTTTGTGTTCGAGGCGAATGTTTGGAGGGAGCAGAACACCCC
CTTGTACTATGTGGAAGTGCTCTTGGCTTGAAGATACCTCGATTTGAGGT
CGGGCGCTATGCTATGGTGTTCTTTTGAAAAGTGTGGTCCACTCAACGTT
TTGGTTGTGACATAATAGGGTACAAAAATATGATGTTTTGGTTGTGTCAC
AATAGGGTACAAAATCTAAGATTTTGGTTGTGACATAATAGGGTACAAAA
TATGACGTTTTGTCTGTGACACAATAGGGTACAAAATATGACGTTTTGTC
TGTGACATAATAGGGTTCAAAAAGTAATAATGATTTTGTCGCCGAATGAG
AAGGGGATGGTTTTTCCTAAGGAAGATGTACGTGGTGGGGGCAAGTATTT
TGTAAGTGCATCGTGTGCGTAAGATGCTCAACTATCATGTCATCGGAGCA
AAAATGCATACATACATATTATATGTGTGTGTGTGTATGTATGTGTATGT
GTATGTAAGCTCACAATTGAATGAAGGGTTCCTACTTGATTTGAGGTGTT
ATTTAAATTATTTTATTTGCTAGGGAGGCGTGTGTGTGTGTGAGTGCCAT
TCGAGCGAATATTTACCACGCTGTATTGATATATATATATATAGGGTTAG
GGTTAGAAATAGCACTAAATCTAATCACAACACATCTGCAATCATCATGG
AGTAAAATAAAATAAAAAAAATTGTTTTACTGAGGGTCAGACGTAGGGTG
GTTGGTGCCACTTTCTGAAATTGTGCATTTCATTTACCTGGAATGATGAC
ATTCATTGATTTTTATTTTCTTCTGTATTCTTTGCCACGGGACCAAATTG
TCTCAATTTTTTTTTCTTTTTTCTATTCCGCATTCTTCGCCACGGGACCA
AAAATCATATCTCGATTTTGCCTCCTTTTTTTTTTGTATTTCGTTTCTTC
TCATCCAAGAGTCGAGAACCTGGAAGGAGGTCAAGTGCCAAGGGCCTTCT
CCAGGGGTTAGGGAGAACAACGGGGTGGTGGAGTACCAGGGGAGTCTATA
CCTCTTCGGTGGTTATAAC
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Coding sequence (CDS) from alignment at C-tenellus_contig11743:1..2219-

>mRNA_C-tenellus_contig11743.1.1 ID=mRNA_C-tenellus_contig11743.1.1|Name=mRNA_C-tenellus_contig11743.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=282bp|location=Sequence derived from alignment at C-tenellus_contig11743:1..2219- (Choristocarpus tenellus KU2346)
GGTGCGCGATCTAGATCATGGCGACAAGTTAAGGTGTCCACAAACTCCTC
CTGTGAGCAGCTACCAGGTCCACGCAGCGGGGCAGCATCTGTAGTTGTTG
GGAACAAGATGTACATGTTTGGTGGATATGGGGGGAGCGGAAGACTGGAC
GACTTTTATGAGTTCAATTTCGAGTCGAGAACCTGGAAGGAGGTCAAGTG
CCAAGGGCCTTCTCCAGGGGTTAGGGAGAACAACGGGGTGGTGGAGTACC
AGGGGAGTCTATACCTCTTCGGTGGTTATAAC
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