mRNA_C-tenellus_contig11742.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11742.1.1
Unique NamemRNA_C-tenellus_contig11742.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11742.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11742contigC-tenellus_contig11742:365..637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTT1
PFAMsAnk_2,Ank_3,Ank_4
Model size273
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.06e-14
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Descriptionprotein ubiquitination
Cds size252
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.4080548-UTR-C-tenellus_contig11742:364..3851680789192.4080548-UTR-C-tenellus_contig11742:364..385Choristocarpus tenellus KU2346UTRC-tenellus_contig11742 365..385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.4183266-CDS-C-tenellus_contig11742:385..6371680789192.4183266-CDS-C-tenellus_contig11742:385..637Choristocarpus tenellus KU2346CDSC-tenellus_contig11742 386..637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11742.1.1prot_C-tenellus_contig11742.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11742 386..637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11742.1.1

>prot_C-tenellus_contig11742.1.1 ID=prot_C-tenellus_contig11742.1.1|Name=mRNA_C-tenellus_contig11742.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=84bp
MVACAAGNADIVRLLATEATPPANLGARAVEGWTPLMIACGAGALEVVKI
LIAAGAGLADTDTTFGSTPLMWACGGGHHKVVR*
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mRNA from alignment at C-tenellus_contig11742:365..637+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11742.1.1 ID=mRNA_C-tenellus_contig11742.1.1|Name=mRNA_C-tenellus_contig11742.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=273bp|location=Sequence derived from alignment at C-tenellus_contig11742:365..637+ (Choristocarpus tenellus KU2346)
ACTAAAGGTAGGACACCCCTTATGGTAGCCTGTGCAGCTGGCAATGCCGA
CATTGTCCGCTTGCTTGCTACAGAAGCCACACCACCAGCCAATCTTGGTG
CCCGAGCTGTAGAGGGCTGGACCCCCCTCATGATCGCGTGTGGAGCTGGT
GCACTAGAGGTGGTGAAGATACTTATTGCAGCTGGGGCTGGGCTGGCGGA
TACTGACACAACATTTGGATCTACACCTCTCATGTGGGCATGTGGAGGAG
GGCATCACAAAGTTGTCAGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig11742:365..637+

>mRNA_C-tenellus_contig11742.1.1 ID=mRNA_C-tenellus_contig11742.1.1|Name=mRNA_C-tenellus_contig11742.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=252bp|location=Sequence derived from alignment at C-tenellus_contig11742:365..637+ (Choristocarpus tenellus KU2346)
ATGGTAGCCTGTGCAGCTGGCAATGCCGACATTGTCCGCTTGCTTGCTAC
AGAAGCCACACCACCAGCCAATCTTGGTGCCCGAGCTGTAGAGGGCTGGA
CCCCCCTCATGATCGCGTGTGGAGCTGGTGCACTAGAGGTGGTGAAGATA
CTTATTGCAGCTGGGGCTGGGCTGGCGGATACTGACACAACATTTGGATC
TACACCTCTCATGTGGGCATGTGGAGGAGGGCATCACAAAGTTGTCAGGT
GA
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