mRNA_C-tenellus_contig1174.8.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1174.8.1
Unique NamemRNA_C-tenellus_contig1174.8.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1174.8.1 vs. uniprot
Match: D7FQK3_ECTSI (Argonaute 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQK3_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 7.070e-26
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 1
Query:    1 KSSQNAYDCITALDISLRHAPSMTHTCVGRSFFTPEDPQRISGGAEVWLGYYQSLRATQ 177
            ++SQNAYDCITALDISLRHAPSM  TCVGRSFFTP+ P  ISGGAEVWLGYYQSLRATQ
Sbjct:  246 QTSQNAYDCITALDISLRHAPSMKLTCVGRSFFTPDMPSPISGGAEVWLGYYQSLRATQ 304          
BLAST of mRNA_C-tenellus_contig1174.8.1 vs. uniprot
Match: A0A2S1PRW8_FUCSE (Putative argonaute n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRW8_FUCSE)

HSP 1 Score: 105 bits (262), Expect = 6.250e-25
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1
Query:   10 QNAYDCITALDISLRHAPSMTHTCVGRSFFTPEDPQRISGGAEVWLGYYQSLRATQ 177
            QNAYDCITALDISLRHAPSM  TCVGRSF++PE P  ISGGAEVWLGYYQSLRATQ
Sbjct:  258 QNAYDCITALDISLRHAPSMALTCVGRSFYSPEMPSPISGGAEVWLGYYQSLRATQ 313          
BLAST of mRNA_C-tenellus_contig1174.8.1 vs. uniprot
Match: A0A397TJF0_9GLOM (Piwi domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TJF0_9GLOM)

HSP 1 Score: 74.3 bits (181), Expect = 5.690e-14
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   13 NAYDCITALDISLRHAPSMTHTCVGRSFFTPEDPQRISGGAEVWLGYYQSLRATQ 177
            N    I ALD+ + H PSM    VGRSFFTP+D Q +SGGAEVW GYYQS R TQ
Sbjct:  129 NCLTAIMALDVLIHHEPSMKFVTVGRSFFTPQDSQVLSGGAEVWQGYYQSARPTQ 183          
BLAST of mRNA_C-tenellus_contig1174.8.1 vs. uniprot
Match: A0A2Z6R9W9_9GLOM (Piwi domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6R9W9_9GLOM)

HSP 1 Score: 72.0 bits (175), Expect = 3.700e-13
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   13 NAYDCITALDISLRHAPSMTHTCVGRSFFTPEDPQRISGGAEVWLGYYQSLRATQ 177
            N    ITA+D+ +RH PSM H  VGRSF+TP++ Q I GGA VW GYYQS R T+
Sbjct:  151 NCLMAITAMDVIIRHKPSMEHVSVGRSFYTPKNAQSIFGGAVVWQGYYQSARPTR 205          
BLAST of mRNA_C-tenellus_contig1174.8.1 vs. uniprot
Match: A0A015JUG7_RHIIW (Uncharacterized protein n=8 Tax=Rhizophagus TaxID=1129544 RepID=A0A015JUG7_RHIIW)

HSP 1 Score: 72.0 bits (175), Expect = 3.700e-13
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   13 NAYDCITALDISLRHAPSMTHTCVGRSFFTPEDPQRISGGAEVWLGYYQSLRATQ 177
            N    I ALD+ + H PSM +  VG SFFTP D + ISGGAE+W GYYQS R TQ
Sbjct:  150 NCLTAIMALDVIIHHQPSMDYVTVGHSFFTPRDSRPISGGAEIWQGYYQSARPTQ 204          
BLAST of mRNA_C-tenellus_contig1174.8.1 vs. uniprot
Match: A0A2P4P2X8_RHIID (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=A0A2P4P2X8_RHIID)

HSP 1 Score: 72.0 bits (175), Expect = 3.740e-13
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   13 NAYDCITALDISLRHAPSMTHTCVGRSFFTPEDPQRISGGAEVWLGYYQSLRATQ 177
            N    I ALD+ + H PSM +  VG SFFTP D + ISGGAE+W GYYQS R TQ
Sbjct:  147 NCLTAIMALDVIIHHQPSMDYVTVGHSFFTPRDSRPISGGAEIWQGYYQSARPTQ 201          
BLAST of mRNA_C-tenellus_contig1174.8.1 vs. uniprot
Match: A0A2Z6QYC2_9GLOM (Piwi domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QYC2_9GLOM)

HSP 1 Score: 71.6 bits (174), Expect = 5.060e-13
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   13 NAYDCITALDISLRHAPSMTHTCVGRSFFTPEDPQRISGGAEVWLGYYQSLRAT 174
            N    I A+D+ +RH PS+ HT VGRSF+TP+D   ++GGAE W GYYQS R T
Sbjct:  149 NCQMAIMAMDVIIRHRPSIVHTTVGRSFYTPQDASPLTGGAEAWQGYYQSARPT 202          
BLAST of mRNA_C-tenellus_contig1174.8.1 vs. uniprot
Match: A0A507BYG2_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BYG2_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 5.060e-13
Identity = 30/57 (52.63%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   22 DCITALDISLRHAPSMTHTCVGRSFFTPEDPQRISGGAEVWLGYYQSLRATQ--VWI 186
            +C+ ALD+ +RH PS+T+T VGRSFFTPE  Q I+ GAE+W G++QS+R ++  +W+
Sbjct:  162 ECLLALDVIVRHGPSITYTTVGRSFFTPEGKQFIANGAELWQGFHQSIRPSRGRLWL 218          
BLAST of mRNA_C-tenellus_contig1174.8.1 vs. uniprot
Match: A0A397STW8_9GLOM (Piwi domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397STW8_9GLOM)

HSP 1 Score: 71.2 bits (173), Expect = 6.910e-13
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   28 ITALDISLRHAPSMTHTCVGRSFFTPEDPQRISGGAEVWLGYYQSLRATQ 177
            I ALDI +RH PS+T+T VGRSFFTP   Q + GG+EVW GYYQS R T+
Sbjct:  153 IMALDILIRHGPSITYTTVGRSFFTPRGSQPLFGGSEVWQGYYQSARPTK 202          
BLAST of mRNA_C-tenellus_contig1174.8.1 vs. uniprot
Match: A0A1D1YV71_9ARAE (Protein argonaute 1 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YV71_9ARAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.910e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   22 DCIT---ALDISLRHAPSMTHTCVGRSFFTPEDPQRISGGAEVWLGYYQSLRAT 174
            DC+T   ALD+ +RH PSM HT VGRSF+TP+  + + GG EVW GYYQS R T
Sbjct:  151 DCLTGIMALDVLIRHKPSMEHTTVGRSFYTPQGSKPLFGGVEVWQGYYQSARPT 204          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1174.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQK3_ECTSI7.070e-2686.44Argonaute 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A2S1PRW8_FUCSE6.250e-2587.50Putative argonaute n=1 Tax=Fucus serratus TaxID=87... [more]
A0A397TJF0_9GLOM5.690e-1461.82Piwi domain-containing protein n=1 Tax=Glomus cere... [more]
A0A2Z6R9W9_9GLOM3.700e-1358.18Piwi domain-containing protein n=1 Tax=Rhizophagus... [more]
A0A015JUG7_RHIIW3.700e-1358.18Uncharacterized protein n=8 Tax=Rhizophagus TaxID=... [more]
A0A2P4P2X8_RHIID3.740e-1358.18Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A2Z6QYC2_9GLOM5.060e-1355.56Piwi domain-containing protein n=1 Tax=Rhizophagus... [more]
A0A507BYG2_9FUNG5.060e-1352.63Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A397STW8_9GLOM6.910e-1364.00Piwi domain-containing protein n=1 Tax=Glomus cere... [more]
A0A1D1YV71_9ARAE6.910e-1359.26Protein argonaute 1 n=1 Tax=Anthurium amnicola Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1174contigC-tenellus_contig1174:14007..14204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FQK3
PFAMsArgoL1,ArgoL2,ArgoMid,ArgoN,PAZ,Piwi
Model size198
Max annot lvl2759|Eukaryota
KEGG koko:K11593
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.16e-26
EggNOG OGsKOG1041@1|root,KOG1041@2759|Eukaryota
Ec32 ortholog descriptionArgonaute 1
Ec32 orthologEc-01_009010.1
Descriptiongene silencing by RNA
Cds size198
COG categoryK
BRITEko00000,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.3786788-CDS-C-tenellus_contig1174:14006..142041680789192.3786788-CDS-C-tenellus_contig1174:14006..14204Choristocarpus tenellus KU2346CDSC-tenellus_contig1174 14007..14204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1174.8.1prot_C-tenellus_contig1174.8.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1174 14007..14204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1174.8.1

>prot_C-tenellus_contig1174.8.1 ID=prot_C-tenellus_contig1174.8.1|Name=mRNA_C-tenellus_contig1174.8.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=66bp
KSSQNAYDCITALDISLRHAPSMTHTCVGRSFFTPEDPQRISGGAEVWLG
YYQSLRATQVWICTP*
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mRNA from alignment at C-tenellus_contig1174:14007..14204+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1174.8.1 ID=mRNA_C-tenellus_contig1174.8.1|Name=mRNA_C-tenellus_contig1174.8.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=198bp|location=Sequence derived from alignment at C-tenellus_contig1174:14007..14204+ (Choristocarpus tenellus KU2346)
AAATCTAGTCAAAATGCTTATGACTGTATCACGGCCTTAGATATCTCTCT CCGGCATGCGCCTTCCATGACCCACACATGTGTTGGGCGCAGTTTTTTTA CACCAGAGGATCCACAGAGGATTTCTGGTGGTGCTGAGGTTTGGTTGGGT TACTACCAGTCTCTACGAGCCACACAGGTATGGATTTGTACACCGTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig1174:14007..14204+

>mRNA_C-tenellus_contig1174.8.1 ID=mRNA_C-tenellus_contig1174.8.1|Name=mRNA_C-tenellus_contig1174.8.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=198bp|location=Sequence derived from alignment at C-tenellus_contig1174:14007..14204+ (Choristocarpus tenellus KU2346)
AAATCTAGTCAAAATGCTTATGACTGTATCACGGCCTTAGATATCTCTCT
CCGGCATGCGCCTTCCATGACCCACACATGTGTTGGGCGCAGTTTTTTTA
CACCAGAGGATCCACAGAGGATTTCTGGTGGTGCTGAGGTTTGGTTGGGT
TACTACCAGTCTCTACGAGCCACACAGGTATGGATTTGTACACCGTAG
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