mRNA_C-tenellus_contig11731.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11731.1.1
Unique NamemRNA_C-tenellus_contig11731.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11731.1.1 vs. uniprot
Match: D8LM46_ECTSI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM46_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.090e-40
Identity = 65/99 (65.66%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:    1 VMYDMDLLLDIKCEIYKVKEADRLTLVLYSTLDISGKPDEGIYRPLGDEVTLVDKFDYVMHGRIFKCAHAGDSKVQILASFGGLLLHLTGDQGNVANIQ 297
            V YDMDLLLD  C+IY VKE +RLT V+ STLD+SGKPD+G Y+PLGDEV+L DK++YVMHGR+++     D+KVQ+ ASFGGLL+ LTGDQ +VANI+
Sbjct:   33 VTYDMDLLLDTNCDIYPVKEGERLTFVIASTLDLSGKPDDGTYKPLGDEVSLADKYEYVMHGRVYRFDQQKDTKVQVFASFGGLLMRLTGDQRHVANIE 131
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BLAST of mRNA_C-tenellus_contig11731.1.1 vs. uniprot
Match: A0A836CD84_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD84_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.420e-28
Identity = 52/98 (53.06%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    1 VMYDMDLLLDIKCEIYKVKEADRLTLVLYSTLDISGKPDEGIYRPLGDEVTLVDKFDYVMHGRIFKCAHAGDSKVQILASFGGLLLHLTGDQGNVANI 294
            V ++MDLLLDI  EIY V++ D+L+LVL STL + G PD+G YRP+  E TL  +++YVMHGR+FK      ++VQ+ ASFGGLL+ LTG+Q ++ +I
Sbjct:   35 VTFEMDLLLDINSEIYTVRQNDKLSLVLSSTLALDGAPDDGTYRPIEHEETLASRYEYVMHGRVFKYEQLTGTQVQVSASFGGLLMRLTGEQRHLVHI 132
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BLAST of mRNA_C-tenellus_contig11731.1.1 vs. uniprot
Match: A0A7S2U8S9_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8S9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 9.730e-28
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 1 
Query:    7 YDMDLLLDIKCEIYKVKEADRLTLVLYSTLDISGKPDEGI-YRPLGDEVTLVDKFDYVMHGRIFKCAHAGDSKVQILASFGGLLLHLTGDQGNVANI 294
            ++ DLLLDI CEIYKV E D++TLVL STL + G PD+   ++P   E TL D +DYVMHGRIF   +  D  V I ASFGGLL+ LTGDQ +++N+
Sbjct:   39 FECDLLLDINCEIYKVLEGDKMTLVLASTLSLDGSPDDHFSFQPNSTEPTLADNYDYVMHGRIFDVGYKKDGVVVIAASFGGLLMRLTGDQRHLSNV 135
[Close]
BLAST of mRNA_C-tenellus_contig11731.1.1 vs. uniprot
Match: A0A7S2E8I0_TRICV (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E8I0_TRICV)

HSP 1 Score: 107 bits (267), Expect = 1.300e-27
Identity = 52/98 (53.06%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:    7 YDMDLLLDIKCEIYKVKEADRLTLVLYSTLDISGKPDEGI-YRPLGDEVTLVDKFDYVMHGRIFKCAHAGDSKVQILASFGGLLLHLTGDQGNVANIQ 297
            +D DLLLDI CEIY + E D++TLVL STL++ G PD+   Y P   E TL D ++YVMHGR+F  A+ G+  + I ASFGGLL+ LTGDQ +++++Q
Sbjct:   37 FDCDLLLDINCEIYNLTEGDKITLVLASTLNLDGTPDDHFSYAPNPGEPTLADNYEYVMHGRVFDVAYKGEGVIVIAASFGGLLMRLTGDQRHLSSVQ 134
[Close]
BLAST of mRNA_C-tenellus_contig11731.1.1 vs. uniprot
Match: A0A7R9WD29_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WD29_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.380e-26
Identity = 50/98 (51.02%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:    7 YDMDLLLDIKCEIYKVKEADRLTLVLYSTLDISGKPDEGI-YRPLGDEVTLVDKFDYVMHGRIFKCAHAGDSKVQILASFGGLLLHLTGDQGNVANIQ 297
            ++ DLLLD+ CEIY ++E++++T VL STL++ G PD+   Y P   E TL D ++YVMHGRIF  A+ G+  + I ASFGGLL+ LTGDQ +++ IQ
Sbjct:   38 FECDLLLDVNCEIYDLRESNKITFVLASTLNLDGTPDDHFSYAPNPGEPTLADNYEYVMHGRIFDVAYKGEGVIVIAASFGGLLMRLTGDQRHLSQIQ 135
[Close]
BLAST of mRNA_C-tenellus_contig11731.1.1 vs. uniprot
Match: A0A7S0CGW6_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGW6_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.190e-24
Identity = 47/97 (48.45%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    7 YDMDLLLDIKCEIYKVKEADRLTLVLYSTLDISGKPDEGIYRPLGDEVTLVDKFDYVMHGRIFKCAHAGDSKVQILASFGGLLLHLTGDQGNVANIQ 297
            ++ DLLLDI CEIY ++E+DR+T+VL  TL++ G PD+        E +L D ++YVMHGR+F+  +  D  + I ASFGGLL+ LTGDQ +++ IQ
Sbjct:   42 FECDLLLDINCEIYSIQESDRITVVLAGTLNLDGTPDDHFSYTGQSEPSLADNYEYVMHGRVFEILYQKDGMISIHASFGGLLMRLTGDQRHLSAIQ 138
[Close]
BLAST of mRNA_C-tenellus_contig11731.1.1 vs. uniprot
Match: A0A1E7FPE4_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FPE4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.860e-24
Identity = 47/96 (48.96%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    7 YDMDLLLDIKCEIYKVKEADRLTLVLYSTLDISGKPDEGIYRPLGDEVTLVDKFDYVMHGRIFKCAHAGDSKVQILASFGGLLLHLTGDQGNVANI 294
            ++ DLLLDI CEIY ++EAD++TLVL STL + G P + +      E TL D ++YVMHGR+F  ++  D    +  SFGGLL+ LTGDQ ++AN+
Sbjct:   39 FECDLLLDINCEIYNLREADKVTLVLASTLHLDGSPADHLSYSPSTEPTLADNYEYVMHGRVFDISYKKDGTAVLALSFGGLLMRLTGDQRHLANV 134
[Close]
BLAST of mRNA_C-tenellus_contig11731.1.1 vs. uniprot
Match: A0A7S1GJQ4_CYCTE (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJQ4_CYCTE)

HSP 1 Score: 97.8 bits (242), Expect = 9.040e-24
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    7 YDMDLLLDIKCEIYKVKEADRLTLVLYSTLDISGKP-DEGIYRPLGDEVTLVDKFDYVMHGRIFKCAHAGDSKVQILASFGGLLLHLTGDQGNVANI 294
            ++ DLLLD+ CEIY VK+ D++TLVL STL + G P D   + P   E TL D ++YVMHGRIF  ++  D  V I AS+GGLL+ LTGDQ +++ +
Sbjct:   42 FECDLLLDLNCEIYNVKDGDKITLVLASTLHLDGSPADHFSFDPNATEPTLADNYEYVMHGRIFDVSYKKDGIVVISASYGGLLMRLTGDQRHLSQV 138
[Close]
BLAST of mRNA_C-tenellus_contig11731.1.1 vs. uniprot
Match: A0A024G723_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G723_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.560e-23
Identity = 46/92 (50.00%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:    1 VMYDMDLLLDIKCEIYKVKEADRLTLVLYSTLDISGKPDEGIYRPLGDEVTLVDKFDYVMHGRIFKCAHAGDSKVQILASFGGLLLHLTGDQ 276
            V Y+++L LDI  E++++K+ D+ T  L STLD+ GKPD+GIY   G + TL+D++DY M+G+IF+  H G + V I ASFGGLL+ L G+Q
Sbjct:   69 VSYELELTLDINSEVWRLKKNDKFTFALVSTLDLEGKPDDGIYNQSG-KATLLDRYDYGMYGKIFQYEHEGGNNVAIYASFGGLLMRLRGEQ 159
[Close]
BLAST of mRNA_C-tenellus_contig11731.1.1 vs. uniprot
Match: A0A024TMY4_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=9 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TMY4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.160e-23
Identity = 46/100 (46.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 VMYDMDLLLDIKCEIYKVKEADRLTLVLYSTLDISGKPDEGIYRPLGDEVTLVDKFDYVMHGRIFKCAHAGDSKVQILASFGGLLLHLTGDQGNVANIQD 300
            V Y+++L+LDI  E++ +K  ++ T  L STLD+ GKPD+GI+   G + TL+D++DY M+G++F+  H G + V I ASFGGLL+ L GDQ ++ NI +
Sbjct:   34 VSYELELMLDINSEVFPMKVHEQFTFALVSTLDLEGKPDDGIFDQTG-KPTLLDRYDYGMYGKVFQYDHEGGNMVAIYASFGGLLMCLRGDQAHLRNIHN 132
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11731.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM46_ECTSI1.090e-4065.66DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A836CD84_9STRA3.420e-2853.06DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2U8S9_9STRA9.730e-2855.67DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2E8I0_TRICV1.300e-2753.06DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7R9WD29_9STRA4.380e-2651.02DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S0CGW6_9STRA2.190e-2448.45DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A1E7FPE4_9STRA2.860e-2448.96DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1GJQ4_CYCTE9.040e-2450.52DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A024G723_9STRA2.560e-2350.00Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
A0A024TMY4_9STRA4.160e-2346.00DNA-directed RNA polymerases I, II, and III subuni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11731contigC-tenellus_contig11731:4665..4988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LM46
Preferred nameRPB8
PFAMsRNA_pol_Rpb8
Model size324
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03016
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000418,GO:0000419,GO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006383,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009304,GO:0009452,GO:0009719,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0032993,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040029,GO:0042221,GO:0042795,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Exons1
Evalue3.45e-41
EggNOG OGsKOG3400@1|root,KOG3400@2759|Eukaryota
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-06_002430.1
Descriptiontranscription by RNA polymerase I
Cds size321
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.0869038-CDS-C-tenellus_contig11731:4664..49851680789192.0869038-CDS-C-tenellus_contig11731:4664..4985Choristocarpus tenellus KU2346CDSC-tenellus_contig11731 4665..4985 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.1008608-UTR-C-tenellus_contig11731:4985..49881680789192.1008608-UTR-C-tenellus_contig11731:4985..4988Choristocarpus tenellus KU2346UTRC-tenellus_contig11731 4986..4988 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11731.1.1prot_C-tenellus_contig11731.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11731 4665..4985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11731.1.1

>prot_C-tenellus_contig11731.1.1 ID=prot_C-tenellus_contig11731.1.1|Name=mRNA_C-tenellus_contig11731.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=107bp
MYDMDLLLDIKCEIYKVKEADRLTLVLYSTLDISGKPDEGIYRPLGDEVT
LVDKFDYVMHGRIFKCAHAGDSKVQILASFGGLLLHLTGDQGNVANIQDI
TGWPSK*
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mRNA from alignment at C-tenellus_contig11731:4665..4988-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11731.1.1 ID=mRNA_C-tenellus_contig11731.1.1|Name=mRNA_C-tenellus_contig11731.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=324bp|location=Sequence derived from alignment at C-tenellus_contig11731:4665..4988- (Choristocarpus tenellus KU2346)
GTTATGTACGACATGGATTTGCTTCTGGATATCAAGTGCGAAATTTACAA
GGTGAAGGAGGCGGACCGGCTCACACTGGTGCTGTACAGTACATTAGATA
TTAGCGGCAAACCAGACGAGGGGATATATCGACCGCTGGGAGATGAGGTA
ACCCTGGTGGACAAGTTTGACTACGTGATGCATGGACGAATTTTCAAGTG
TGCGCATGCAGGGGATAGTAAGGTCCAGATTCTTGCGTCTTTTGGGGGAC
TGCTGCTGCACTTGACTGGGGACCAAGGGAACGTAGCCAACATTCAGGAC
ATAACTGGCTGGCCTTCCAAATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig11731:4665..4988-

>mRNA_C-tenellus_contig11731.1.1 ID=mRNA_C-tenellus_contig11731.1.1|Name=mRNA_C-tenellus_contig11731.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=321bp|location=Sequence derived from alignment at C-tenellus_contig11731:4665..4988- (Choristocarpus tenellus KU2346)
ATGTACGACATGGATTTGCTTCTGGATATCAAGTGCGAAATTTACAAGGT
GAAGGAGGCGGACCGGCTCACACTGGTGCTGTACAGTACATTAGATATTA
GCGGCAAACCAGACGAGGGGATATATCGACCGCTGGGAGATGAGGTAACC
CTGGTGGACAAGTTTGACTACGTGATGCATGGACGAATTTTCAAGTGTGC
GCATGCAGGGGATAGTAAGGTCCAGATTCTTGCGTCTTTTGGGGGACTGC
TGCTGCACTTGACTGGGGACCAAGGGAACGTAGCCAACATTCAGGACATA
ACTGGCTGGCCTTCCAAATGA
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