mRNA_C-tenellus_contig11730.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11730.1.1
Unique NamemRNA_C-tenellus_contig11730.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11730.1.1 vs. uniprot
Match: A0A6H5L2A1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A1_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 6.170e-48
Identity = 93/146 (63.70%), Postives = 108/146 (73.97%), Query Frame = 1
Query:   34 VAKVRKYHESALIEADILRDVNRRE--AQRAAWRSSLCVDLLSQFDYQGHCCLVFECLGQSLYDYLKKNAYRGFPMGTLRPISLQLLQVCVVGLVGYCAAIDFLHSMKLIHTDLKPENVLLRSRRDETVVLPSGDSILVPSVPEIK 465
            V KV KYHESALIEA ILRDVN RE   +R    +SLCV++ +QF++QGHCCLVFECLG+SLYDYLKKN YRGFP+  LR IS +LLQ           A++FLHS+KLIHTDLKPENVLL+S  D +V L SGD I VP  P IK
Sbjct:  453 VRKVAKYHESALIEAQILRDVNLRERSTRRNTIDTSLCVEMFAQFEHQGHCCLVFECLGRSLYDYLKKNDYRGFPIDVLRSISRELLQ-----------AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVPVNPRIK 587          
BLAST of mRNA_C-tenellus_contig11730.1.1 vs. uniprot
Match: D7FR38_ECTSI (AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR38_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.250e-40
Identity = 85/146 (58.22%), Postives = 101/146 (69.18%), Query Frame = 1
Query:   34 VAKVRKYHESALIEADILRDVNRRE--AQRAAWRSSLCVDLLSQFDYQGHCCLVFECLGQSLYDYLKKNAYRGFPMGTLRPISLQLLQVCVVGLVGYCAAIDFLHSMKLIHTDLKPENVLLRSRRDETVVLPSGDSILVPSVPEIK 465
            V KV KYHESALIEA ILRDVN RE   +R    +SLCV++ +QF++Q       ECLG+SLYD+LKKN YRGFP+  LR IS +LLQ           A++FLHS+KLIHTDLKPENVLL+S  D +V L SGD I VP  P IK
Sbjct:   51 VRKVAKYHESALIEAQILRDVNFRERSTRRNTIDTSLCVEMFAQFEHQ-----CSECLGRSLYDFLKKNDYRGFPIDVLRSISRELLQ-----------AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVPVNPRIK 180          
BLAST of mRNA_C-tenellus_contig11730.1.1 vs. uniprot
Match: A0A835Z1U5_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U5_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.630e-33
Identity = 72/119 (60.50%), Postives = 84/119 (70.59%), Query Frame = 1
Query:   34 VAKVRKYHESALIEADILRDVNRREAQRAAWRSSLCVDLLSQFDYQGHCCLVFECLGQSLYDYLKKNAYRGFPMGTLRPISLQLLQVCVVGLVGYCAAIDFLHSMKLIHTDLKPENVLL 390
            V +V++YHESALIEADILRDVNR     AA    LCV LL QFD +GHCCLVFE +G SLYD LK+N YRGFP+  +R  + QLL+           A+ FLHSM L+HTDLKPENVLL
Sbjct:  219 VRRVKRYHESALIEADILRDVNRAGGAGAA----LCVRLLDQFDARGHCCLVFERMGPSLYDVLKRNDYRGFPLRYVRDFARQLLE-----------AVAFLHSMGLVHTDLKPENVLL 322          
BLAST of mRNA_C-tenellus_contig11730.1.1 vs. uniprot
Match: A0A7S3XZ96_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ96_HETAK)

HSP 1 Score: 128 bits (321), Expect = 1.500e-32
Identity = 77/144 (53.47%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   34 VAKVRKYHESALIEADILRDVNRREAQRAAWRSSLCVDLLSQFDYQGHCCLVFECLGQSLYDYLKKNAYRGFPMGTLRPISLQLLQVCVVGLVGYCAAIDFLHSMKLIHTDLKPENVLLRSRRDETVVLPSGDSILVPSVPEIK 465
            V +VR+Y +SA IEAD+L DVN     RA     LC  +L+ FD QGH CLV E LG+SLYDYLK NAY GFP G LR    QLL+         C A  FL  +KLIHTDLKPENVL+   RD     P G  ILVP+ P IK
Sbjct:   91 VRRVRRYRDSAKIEADLLYDVNAHARGRA-----LCSQILAHFDEQGHYCLVLEELGRSLYDYLKGNAYAGFPPGHLRAFGRQLLE---------CLA--FLKDIKLIHTDLKPENVLVCPGRDVEAAGPGGRRILVPAEPRIK 218          
BLAST of mRNA_C-tenellus_contig11730.1.1 vs. uniprot
Match: A0A7S3QFB1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QFB1_9STRA)

HSP 1 Score: 127 bits (319), Expect = 4.250e-31
Identity = 73/156 (46.79%), Postives = 97/156 (62.18%), Query Frame = 1
Query:    7 KNILDWVCC--VAKVRKYHESALIEADILRDVNRREAQRAAWRSSLCVDLLSQFDYQ-GHCCLVFECLGQSLYDYLKKNAYRGFPMGTLRPISLQLLQVCVVGLVGYCAAIDFLHSMKLIHTDLKPENVLLRSRRDETVVLPSGDSILVPSVPEIK 465
            K I D V    V  V++YHESALIEADIL+DVNRR  +      SLCV +L  FD Q GHCCLVFECLG+SLYD++K + ++ FP+  +R  + Q+L            A+DF+HS  LIHTDLKPEN++L S ++ +     G    +P+   IK
Sbjct:  646 KRIEDTVAIKIVRNVKRYHESALIEADILKDVNRRGGRGR----SLCVVMLRHFDLQRGHCCLVFECLGRSLYDFMKTHGFKPFPLFCVRDFARQILD-----------ALDFIHSFGLIHTDLKPENIMLVSNKERSYRCNDGSDQQIPASTCIK 786          
BLAST of mRNA_C-tenellus_contig11730.1.1 vs. uniprot
Match: A0A7S1BPD7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPD7_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.660e-30
Identity = 66/144 (45.83%), Postives = 90/144 (62.50%), Query Frame = 1
Query:   34 VAKVRKYHESALIEADILRDVNRREAQRAAWRSSLCVDLLSQFDYQGHCCLVFECLGQSLYDYLKKNAYRGFPMGTLRPISLQLLQVCVVGLVGYCAAIDFLHSMKLIHTDLKPENVLLRSRRDETVVLPSGDSILVPSVPEIK 465
            V  VR+YHESA IEADILRDVN R  +       LCV +   F+++GH CLVFE LG+SLYD+LK++ YR FP+  ++  + QLL            A+DFLH   LIHTDLKPEN+LL + ++ +    +G   + P+  +IK
Sbjct:   70 VRDVRRYHESAKIEADILRDVNGRGGRGVG----LCVRMFRSFNFKGHYCLVFESLGRSLYDFLKRHDYRPFPLYCVKDFASQLLD-----------ALDFLHGFHLIHTDLKPENILLTTNKEVSYKNVNGVVEIAPASTKIK 198          
BLAST of mRNA_C-tenellus_contig11730.1.1 vs. uniprot
Match: B8CFH7_THAPS (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFH7_THAPS)

HSP 1 Score: 120 bits (300), Expect = 6.580e-30
Identity = 68/145 (46.90%), Postives = 88/145 (60.69%), Query Frame = 1
Query:   34 VAKVRKYHESALIEADILRDVNRREAQRAAWRSSLCVDLLSQFDYQ-GHCCLVFECLGQSLYDYLKKNAYRGFPMGTLRPISLQLLQVCVVGLVGYCAAIDFLHSMKLIHTDLKPENVLLRSRRDETVVLPSGDSILVPSVPEIK 465
            V  VR+Y++SALIEADI   VNR ++++      LC  +L +F    GH CLVFECLG+SLYD+LK +AYR FPM  +R  + QLL            A+DFLH   LIHTDLKPEN+LL    + T    +G S  VP   ++K
Sbjct:   36 VRNVRRYYDSALIEADICERVNREQSRK---NKDLCAKMLDRFSLSSGHYCLVFECLGRSLYDFLKMHAYRPFPMFCVRDFARQLL-----------VALDFLHGFGLIHTDLKPENILLTHNEETTYRAWNGSSYRVPVSTKVK 166          
BLAST of mRNA_C-tenellus_contig11730.1.1 vs. uniprot
Match: A0A6U3ZL48_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3ZL48_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.350e-29
Identity = 67/144 (46.53%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   34 VAKVRKYHESALIEADILRDVNRREAQRAAWRSSLCVDLLSQFDYQGHCCLVFECLGQSLYDYLKKNAYRGFPMGTLRPISLQLLQVCVVGLVGYCAAIDFLHSMKLIHTDLKPENVLLRSRRDETVVLPSGDSILVPSVPEIK 465
            V  +RKY +SA IEADILRDVN+      A   S CV L   F + GH CLVFE L  SLYD +K N Y+ FP+  +   + Q+L+           A++FLH MKLIHTDLKPENVL+ SR    +    G  + VP+ P+IK
Sbjct:  130 VRNIRKYTDSAAIEADILRDVNKHSRATGA---SPCVALYDDFKFSGHFCLVFESLSDSLYDMIKANDYKPFPLNYVLAFTQQMLE-----------AVEFLHDMKLIHTDLKPENVLVVSRERCVIENDHGARVSVPTSPQIK 259          
BLAST of mRNA_C-tenellus_contig11730.1.1 vs. uniprot
Match: A0A7S1BLV6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLV6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.040e-29
Identity = 66/144 (45.83%), Postives = 90/144 (62.50%), Query Frame = 1
Query:   34 VAKVRKYHESALIEADILRDVNRREAQRAAWRSSLCVDLLSQFDYQGHCCLVFECLGQSLYDYLKKNAYRGFPMGTLRPISLQLLQVCVVGLVGYCAAIDFLHSMKLIHTDLKPENVLLRSRRDETVVLPSGDSILVPSVPEIK 465
            V  VR+YHESA IEADILRDVN R  +       LCV +   F+++GH CLVFE LG+SLYD+LK++ YR FP+  ++  + QLL            A+DFLH   LIHTDLKPEN+LL + ++ +    +G   + P+  +IK
Sbjct:   70 VRDVRRYHESAKIEADILRDVNGRGGRGVG----LCVRMFRSFNFKGHYCLVFESLGRSLYDFLKRHDYRPFPLYCVKDFASQLLD-----------ALDFLHGFHLIHTDLKPENILLTTNKEVSYKNVNGVVEIAPASTKIK 198          
BLAST of mRNA_C-tenellus_contig11730.1.1 vs. uniprot
Match: H3G737_PHYRM (Protein kinase domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=H3G737_PHYRM)

HSP 1 Score: 114 bits (286), Expect = 1.090e-27
Identity = 63/136 (46.32%), Postives = 86/136 (63.24%), Query Frame = 1
Query:    1 KNKNILDWVCCVAKVRKYHESALIEADILRDVNRREAQRAAWRSSLCVDLLSQFDYQGHCCLVFECLGQSLYDYLKKNAYRGFPMGTLRPISLQLLQVCVVGLVGYCAAIDFLHSMKLIHTDLKPENVLLRSRRDE 408
            K +NI+  +  V KV KY ESA IEA IL+DVN ++        SLCV +   F+Y+GH C+VFE LG SLYDYLK + Y+ FP+  +R  + QLL            +++F+HS++LIHTDLKPEN+LL    +E
Sbjct:   39 KQRNIVVAIKVVRKVDKYTESAKIEAAILQDVNDKDKNN----ESLCVRMFKWFEYKGHVCMVFERLGCSLYDYLKNHDYKPFPLHCIRAYAWQLL-----------TSLEFIHSIRLIHTDLKPENILLVEDEEE 159          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11730.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2A1_9PHAE6.170e-4863.70Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FR38_ECTSI1.250e-4058.22AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinas... [more]
A0A835Z1U5_9STRA1.630e-3360.50Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S3XZ96_HETAK1.500e-3253.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3QFB1_9STRA4.250e-3146.79Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1BPD7_9STRA1.660e-3045.83Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B8CFH7_THAPS6.580e-3046.90Protein kinase domain-containing protein (Fragment... [more]
A0A6U3ZL48_9STRA1.350e-2946.53Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1BLV6_9STRA2.040e-2945.83Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
H3G737_PHYRM1.090e-2746.32Protein kinase domain-containing protein n=4 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11730contigC-tenellus_contig11730:57..1378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps38736
PFAMsPkinase
Model size465
Max annot lvl2836|Bacillariophyta
KEGG koko:K08823
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.08e-30
EggNOG OGsKOG0667@1|root,KOG0671@2759|Eukaryota,2XFMN@2836|Bacillariophyta
EC2.7.12.1
DescriptionBelongs to the protein kinase superfamily
Cds size465
COG categoryT
BRITEko00000,ko01000,ko01001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.0407803-CDS-C-tenellus_contig11730:56..1971680789192.0407803-CDS-C-tenellus_contig11730:56..197Choristocarpus tenellus KU2346CDSC-tenellus_contig11730 57..197 -
1680789192.053336-CDS-C-tenellus_contig11730:1054..13781680789192.053336-CDS-C-tenellus_contig11730:1054..1378Choristocarpus tenellus KU2346CDSC-tenellus_contig11730 1055..1378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11730.1.1prot_C-tenellus_contig11730.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11730 57..1378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11730.1.1

>prot_C-tenellus_contig11730.1.1 ID=prot_C-tenellus_contig11730.1.1|Name=mRNA_C-tenellus_contig11730.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=155bp
KNKNILDWVCCVAKVRKYHESALIEADILRDVNRREAQRAAWRSSLCVDL
LSQFDYQGHCCLVFECLGQSLYDYLKKNAYRGFPMGTLRPISLQLLQVCV
VGLVGYCAAIDFLHSMKLIHTDLKPENVLLRSRRDETVVLPSGDSILVPS
VPEIK
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mRNA from alignment at C-tenellus_contig11730:57..1378-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11730.1.1 ID=mRNA_C-tenellus_contig11730.1.1|Name=mRNA_C-tenellus_contig11730.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1322bp|location=Sequence derived from alignment at C-tenellus_contig11730:57..1378- (Choristocarpus tenellus KU2346)
AAAAATAAAAATATTTTGGATTGGGTGTGCTGTGTGGCAAAGGTGAGGAA ATATCACGAATCGGCCCTCATCGAGGCCGACATCCTCAGAGATGTGAACA GGAGGGAAGCACAGCGAGCCGCATGGAGGTCGTCCCTCTGTGTAGATTTG CTGTCCCAGTTTGATTACCAGGGACACTGCTGCCTCGTGTTTGAGTGCCT GGGTCAGTCTCTGTACGACTACCTTAAGAAGAACGCCTATCGAGGGTTTC CGATGGGCACTCTGAGACCGATTTCCCTTCAGCTGCTTCAGGTGTGTGTG GTTGGGTTGGTGGGTTATTGTGCTGTTTTGGTATCTACTCTGTTATGTAT GTTATGTATGTTATGTATGTTATGTATGTTATGTATGTTATGTATGTTAT GTATGTTATGTATGTATGTATGTATGTATGTGTGAATCTTTGTGACTGAC TCCTTTATGTATATTTTCTGGGAGGATAGTGAAGTCGCTCTCGTGTGTTT TCCAGGGGTGTATCTGATCCTAACTTCAACCGGAACTATTTGGTTGTTTT GAAACGTTCTATACTTTGTATGTTATAGGGTTAGGGTTAGGGTTAGGGTT AGGGTTAGTGTCAGGGTCATCTATATGCACATGCGCGTGCACACACACAC GTATGTGAATTGAAGTTAATAAATGATTCCATGTGTGTTACCAGTATTTC CTGTACAAAGATGGAAAAGCAGACCTGTGCATCTAATCTACACATGAACA GACCTGTGGAGTTTTTTGTCCACTTTTTATTGCATAATTTTTTTTATTCA TCGAAGTAGGTATTATCATGTTACATCAAAGTAGGTATTATCATGTTACA TCAAAGTAGGTAAATAGCAGTTGTGAAAATCTGTTTAATGTATTTAAGAT GTTACTTGGTACCAAAAAACTTAATGGACGTAGAATATCCCAACTTTAAG AGATACTTAATAGTCTATTTTTTTTAAAGGCAGTGTTTGTCATCCATCTC CTACAGTGAAACTCCACTCCATCCAGAAAAAGAAGCACATTTTCAACAGC ACATACACCCCCAAGCCATAGTTTTCCTTTAAAAACAAAAATGAACAAAC CGGAAGGTGTTGTTGGTTCTGTGCCAAATTTAATCGAAAAATACCTACGT ATGTTTTTTTCCCATAATGTGACATGAAAAGGCAATTGACTTCTTGCACT CAATGAAGTTGATCCATACTGACCTCAAGCCGGAGAATGTCCTCCTGCGC TCGAGGAGGGATGAGACTGTTGTTCTGCCATCCGGGGACTCCATCTTAGT GCCCTCTGTTCCGGAGATTAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig11730:57..1378-

>mRNA_C-tenellus_contig11730.1.1 ID=mRNA_C-tenellus_contig11730.1.1|Name=mRNA_C-tenellus_contig11730.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=465bp|location=Sequence derived from alignment at C-tenellus_contig11730:57..1378- (Choristocarpus tenellus KU2346)
AAAAATAAAAATATTTTGGATTGGGTGTGCTGTGTGGCAAAGGTGAGGAA
ATATCACGAATCGGCCCTCATCGAGGCCGACATCCTCAGAGATGTGAACA
GGAGGGAAGCACAGCGAGCCGCATGGAGGTCGTCCCTCTGTGTAGATTTG
CTGTCCCAGTTTGATTACCAGGGACACTGCTGCCTCGTGTTTGAGTGCCT
GGGTCAGTCTCTGTACGACTACCTTAAGAAGAACGCCTATCGAGGGTTTC
CGATGGGCACTCTGAGACCGATTTCCCTTCAGCTGCTTCAGGTGTGTGTG
GTTGGGTTGGTGGGTTATTGTGCTGCAATTGACTTCTTGCACTCAATGAA
GTTGATCCATACTGACCTCAAGCCGGAGAATGTCCTCCTGCGCTCGAGGA
GGGATGAGACTGTTGTTCTGCCATCCGGGGACTCCATCTTAGTGCCCTCT
GTTCCGGAGATTAAG
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