mRNA_C-tenellus_contig1173.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: D7G800_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G800_ECTSI) HSP 1 Score: 190 bits (482), Expect = 3.960e-54 Identity = 89/137 (64.96%), Postives = 111/137 (81.02%), Query Frame = 2 Query: 218 MDSLSFATHMLADAV--GRGGTAVADQVSYVPRETIENFPQIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAAR 622 ++++ AT +LA A RGG AV +Q+ YVP + + +F +IV+GS AC+ AYAWAAYEFGKRIVTQR C VC GSGLVS++R G +P+KCYACGGFLPWE+WG+FW++NMDVGNGGVLQRPARDYD LN+AAR Sbjct: 13 IEAMDHATWILAVAADSSRGG-AVVEQIPYVPGD-VADFDKIVIGSAACLAAYAWAAYEFGKRIVTQRACEVCKGSGLVSTSRSGKQLRQPKKCYACGGFLPWESWGKFWKTNMDVGNGGVLQRPARDYDELNEAAR 147
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: A0A6H5JMD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMD9_9PHAE) HSP 1 Score: 190 bits (482), Expect = 1.940e-53 Identity = 89/137 (64.96%), Postives = 111/137 (81.02%), Query Frame = 2 Query: 218 MDSLSFATHMLADAV--GRGGTAVADQVSYVPRETIENFPQIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAAR 622 ++++ AT +LA A RGG AV +Q+ YVP + + +F +IV+GS AC+ AYAWAAYEFGKRIVTQR C VC GSGLVS++R G +P+KCYACGGFLPWE+WG+FW++NMDVGNGGVLQRPARDYD LN+AAR Sbjct: 63 IEAIDHATWILAVAADSSRGG-AVVEQIPYVPGD-VADFDKIVIGSAACLAAYAWAAYEFGKRIVTQRACEVCKGSGLVSTSRSGKQLRQPKKCYACGGFLPWESWGKFWKTNMDVGNGGVLQRPARDYDELNEAAR 197
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: A0A835Z783_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z783_9STRA) HSP 1 Score: 176 bits (447), Expect = 5.360e-49 Identity = 84/145 (57.93%), Postives = 99/145 (68.28%), Query Frame = 2 Query: 209 GDGMDSLSFATHMLADAVGRGGTAVADQVSYVPRETIENFPQIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAARETQGDTA 643 GD + +++ L + G G A V YVP + ++NFPQIV GS A VL Y WA YEFG RIVTQR CAVCNGSGLV+ +R G +PRKCYACGGFLPWE+W RFW +N VGNGG+L+RPA DYD LN ARE Q A Sbjct: 6 GDALSAVTLLAESLKEVPGLGIPAQPQNV-YVPPDQVDNFPQIVAGSAAGVLVYLWALYEFGSRIVTQRACAVCNGSGLVTVSRTGRKLMQPRKCYACGGFLPWESWSRFWVANKYVGNGGILRRPAADYDELNAKAREAQAKQA 149
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: I2CSA8_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSA8_NANGC) HSP 1 Score: 136 bits (342), Expect = 4.190e-34 Identity = 61/105 (58.10%), Postives = 72/105 (68.57%), Query Frame = 2 Query: 332 QIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAARETQGDTAG 646 Q+ VG A V + WA +EF KRI Q+RC VC GSGLV N G PRKCYACGGFLPW W RFW SN+D+GNGGVLQRPA DY+AL++AA+ + G Sbjct: 43 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAKRRRAGREG 147
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: W7TBR1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBR1_9STRA) HSP 1 Score: 135 bits (339), Expect = 1.490e-32 Identity = 60/97 (61.86%), Postives = 70/97 (72.16%), Query Frame = 2 Query: 332 QIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAAR 622 Q+ VG A V + WA +EF KRI Q+RC VC GSGLV N G PRKCYACGGFLPW W RFW SN+D+GNGGVLQRPA DY+AL++AA+ Sbjct: 141 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAK 237
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: A0A7S2V7K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7K2_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.720e-29 Identity = 55/123 (44.72%), Postives = 81/123 (65.85%), Query Frame = 2 Query: 281 VADQVSYVPRE----TIENFPQIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAARETQGD 637 +AD+VS + IE P++ + +GACVL + WAAYEF R Q RC VC G+GLV G+ PRKCYACGGF+P+ +W +F+ +N +GNGG+L+RPA++Y+ L+ AA+ + + Sbjct: 70 LADEVSSAATKFEPGPIEVGPELWIANGACVLVFLWAAYEFWSRFDVQGRCGVCQGTGLVMETSTGIPLSNPRKCYACGGFVPFVSWRQFFFANTQIGNGGILRRPAKNYEELSAAAKAKESE 192
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: A0A4D9CUP8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUP8_9STRA) HSP 1 Score: 114 bits (285), Expect = 7.420e-25 Identity = 54/105 (51.43%), Postives = 62/105 (59.05%), Query Frame = 2 Query: 332 QIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAARETQGDTAG 646 Q+ VG A V + WA +EF KRI Q+RC VC GSGLV N G PRKCYACGGFLPW W RFW SN+D+GNGG R + +AR GD G Sbjct: 141 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGCCSGRRR---IMRPSARRPSGDGRG 242
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: A4S5T7_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S5T7_OSTLU) HSP 1 Score: 88.6 bits (218), Expect = 1.200e-16 Identity = 48/99 (48.48%), Postives = 59/99 (59.60%), Query Frame = 2 Query: 332 QIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAARET 628 Q+ G A V +A AAYEFGKR++ QRRCA+C GSGLV R R KC ACGGFLPW++W RF S + GNGGV++ P A + T Sbjct: 64 QLWFGFIAGVSPFAIAAYEFGKRVLIQRRCALCAGSGLVEVERS--RGARLVKCTACGGFLPWQSWERFLSS--EAGNGGVVRAPKGQTSAFYSVEKAT 158
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: A0A7R9TP18_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TP18_9VIRI) HSP 1 Score: 87.8 bits (216), Expect = 1.200e-16 Identity = 43/85 (50.59%), Postives = 52/85 (61.18%), Query Frame = 2 Query: 332 QIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRP 586 Q+VVG V +AWA+ EFGKRI+ QRRC C GSGLV G+ R +C ACGGFLPWE+W +F+ G GG L P Sbjct: 40 QLVVGFVVGVFPFAWASVEFGKRILIQRRCEGCGGSGLVEIGSKGLR--RKVRCRACGGFLPWESWEKFFLGTGTPGTGGPLLVP 122
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: A0A1Y5IAS3_OSTTA (Uncharacterized protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IAS3_OSTTA) HSP 1 Score: 87.0 bits (214), Expect = 3.320e-16 Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 2 Query: 332 QIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRP 586 Q+ G A + +A AAYEFGKR++ Q+RCA C G+GLV DG R KC ACGGFLPWE+W RF S +VGNGGV++ P Sbjct: 65 QLWFGFIAGLSPFAIAAYEFGKRVLIQKRCARCAGAGLVVLGDDG----RKVKCPACGGFLPWESWERFLTS--EVGNGGVVRAP 143 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig1173.2.1 >prot_C-tenellus_contig1173.2.1 ID=prot_C-tenellus_contig1173.2.1|Name=mRNA_C-tenellus_contig1173.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=191bp MKTKAFGVLTTLATICCCDVFAFQASPSRSLQRPHLPRLSFSGDGMDSLSback to top mRNA from alignment at C-tenellus_contig1173:8621..10718- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig1173.2.1 ID=mRNA_C-tenellus_contig1173.2.1|Name=mRNA_C-tenellus_contig1173.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2098bp|location=Sequence derived from alignment at C-tenellus_contig1173:8621..10718- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig1173:8621..10718- >mRNA_C-tenellus_contig1173.2.1 ID=mRNA_C-tenellus_contig1173.2.1|Name=mRNA_C-tenellus_contig1173.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=573bp|location=Sequence derived from alignment at C-tenellus_contig1173:8621..10718- (Choristocarpus tenellus KU2346)back to top |