mRNA_C-tenellus_contig1173.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1173.2.1
Unique NamemRNA_C-tenellus_contig1173.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: D7G800_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G800_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 3.960e-54
Identity = 89/137 (64.96%), Postives = 111/137 (81.02%), Query Frame = 2
Query:  218 MDSLSFATHMLADAV--GRGGTAVADQVSYVPRETIENFPQIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAAR 622
            ++++  AT +LA A    RGG AV +Q+ YVP + + +F +IV+GS AC+ AYAWAAYEFGKRIVTQR C VC GSGLVS++R G    +P+KCYACGGFLPWE+WG+FW++NMDVGNGGVLQRPARDYD LN+AAR
Sbjct:   13 IEAMDHATWILAVAADSSRGG-AVVEQIPYVPGD-VADFDKIVIGSAACLAAYAWAAYEFGKRIVTQRACEVCKGSGLVSTSRSGKQLRQPKKCYACGGFLPWESWGKFWKTNMDVGNGGVLQRPARDYDELNEAAR 147          
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: A0A6H5JMD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMD9_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.940e-53
Identity = 89/137 (64.96%), Postives = 111/137 (81.02%), Query Frame = 2
Query:  218 MDSLSFATHMLADAV--GRGGTAVADQVSYVPRETIENFPQIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAAR 622
            ++++  AT +LA A    RGG AV +Q+ YVP + + +F +IV+GS AC+ AYAWAAYEFGKRIVTQR C VC GSGLVS++R G    +P+KCYACGGFLPWE+WG+FW++NMDVGNGGVLQRPARDYD LN+AAR
Sbjct:   63 IEAIDHATWILAVAADSSRGG-AVVEQIPYVPGD-VADFDKIVIGSAACLAAYAWAAYEFGKRIVTQRACEVCKGSGLVSTSRSGKQLRQPKKCYACGGFLPWESWGKFWKTNMDVGNGGVLQRPARDYDELNEAAR 197          
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: A0A835Z783_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z783_9STRA)

HSP 1 Score: 176 bits (447), Expect = 5.360e-49
Identity = 84/145 (57.93%), Postives = 99/145 (68.28%), Query Frame = 2
Query:  209 GDGMDSLSFATHMLADAVGRGGTAVADQVSYVPRETIENFPQIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAARETQGDTA 643
            GD + +++     L +  G G  A    V YVP + ++NFPQIV GS A VL Y WA YEFG RIVTQR CAVCNGSGLV+ +R G    +PRKCYACGGFLPWE+W RFW +N  VGNGG+L+RPA DYD LN  ARE Q   A
Sbjct:    6 GDALSAVTLLAESLKEVPGLGIPAQPQNV-YVPPDQVDNFPQIVAGSAAGVLVYLWALYEFGSRIVTQRACAVCNGSGLVTVSRTGRKLMQPRKCYACGGFLPWESWSRFWVANKYVGNGGILRRPAADYDELNAKAREAQAKQA 149          
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: I2CSA8_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSA8_NANGC)

HSP 1 Score: 136 bits (342), Expect = 4.190e-34
Identity = 61/105 (58.10%), Postives = 72/105 (68.57%), Query Frame = 2
Query:  332 QIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAARETQGDTAG 646
            Q+ VG  A V  + WA +EF KRI  Q+RC VC GSGLV  N  G     PRKCYACGGFLPW  W RFW SN+D+GNGGVLQRPA DY+AL++AA+  +    G
Sbjct:   43 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAKRRRAGREG 147          
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: W7TBR1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBR1_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.490e-32
Identity = 60/97 (61.86%), Postives = 70/97 (72.16%), Query Frame = 2
Query:  332 QIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAAR 622
            Q+ VG  A V  + WA +EF KRI  Q+RC VC GSGLV  N  G     PRKCYACGGFLPW  W RFW SN+D+GNGGVLQRPA DY+AL++AA+
Sbjct:  141 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAK 237          
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: A0A7S2V7K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7K2_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.720e-29
Identity = 55/123 (44.72%), Postives = 81/123 (65.85%), Query Frame = 2
Query:  281 VADQVSYVPRE----TIENFPQIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAARETQGD 637
            +AD+VS    +     IE  P++ + +GACVL + WAAYEF  R   Q RC VC G+GLV     G+    PRKCYACGGF+P+ +W +F+ +N  +GNGG+L+RPA++Y+ L+ AA+  + +
Sbjct:   70 LADEVSSAATKFEPGPIEVGPELWIANGACVLVFLWAAYEFWSRFDVQGRCGVCQGTGLVMETSTGIPLSNPRKCYACGGFVPFVSWRQFFFANTQIGNGGILRRPAKNYEELSAAAKAKESE 192          
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: A0A4D9CUP8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUP8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 7.420e-25
Identity = 54/105 (51.43%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  332 QIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAARETQGDTAG 646
            Q+ VG  A V  + WA +EF KRI  Q+RC VC GSGLV  N  G     PRKCYACGGFLPW  W RFW SN+D+GNGG      R    +  +AR   GD  G
Sbjct:  141 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGCCSGRRR---IMRPSARRPSGDGRG 242          
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: A4S5T7_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S5T7_OSTLU)

HSP 1 Score: 88.6 bits (218), Expect = 1.200e-16
Identity = 48/99 (48.48%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  332 QIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRPARDYDALNKAARET 628
            Q+  G  A V  +A AAYEFGKR++ QRRCA+C GSGLV   R      R  KC ACGGFLPW++W RF  S  + GNGGV++ P     A     + T
Sbjct:   64 QLWFGFIAGVSPFAIAAYEFGKRVLIQRRCALCAGSGLVEVERS--RGARLVKCTACGGFLPWQSWERFLSS--EAGNGGVVRAPKGQTSAFYSVEKAT 158          
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: A0A7R9TP18_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TP18_9VIRI)

HSP 1 Score: 87.8 bits (216), Expect = 1.200e-16
Identity = 43/85 (50.59%), Postives = 52/85 (61.18%), Query Frame = 2
Query:  332 QIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRP 586
            Q+VVG    V  +AWA+ EFGKRI+ QRRC  C GSGLV     G+   R  +C ACGGFLPWE+W +F+      G GG L  P
Sbjct:   40 QLVVGFVVGVFPFAWASVEFGKRILIQRRCEGCGGSGLVEIGSKGLR--RKVRCRACGGFLPWESWEKFFLGTGTPGTGGPLLVP 122          
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Match: A0A1Y5IAS3_OSTTA (Uncharacterized protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IAS3_OSTTA)

HSP 1 Score: 87.0 bits (214), Expect = 3.320e-16
Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 2
Query:  332 QIVVGSGACVLAYAWAAYEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWGRFWQSNMDVGNGGVLQRP 586
            Q+  G  A +  +A AAYEFGKR++ Q+RCA C G+GLV    DG    R  KC ACGGFLPWE+W RF  S  +VGNGGV++ P
Sbjct:   65 QLWFGFIAGLSPFAIAAYEFGKRVLIQKRCARCAGAGLVVLGDDG----RKVKCPACGGFLPWESWERFLTS--EVGNGGVVRAP 143          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1173.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G800_ECTSI3.960e-5464.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMD9_9PHAE1.940e-5364.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z783_9STRA5.360e-4957.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
I2CSA8_NANGC4.190e-3458.10Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
W7TBR1_9STRA1.490e-3261.86Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S2V7K2_9STRA1.720e-2944.72Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9CUP8_9STRA7.420e-2551.43Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A4S5T7_OSTLU1.200e-1648.48Uncharacterized protein n=2 Tax=Ostreococcus sp. '... [more]
A0A7R9TP18_9VIRI1.200e-1650.59Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A1Y5IAS3_OSTTA3.320e-1654.12Uncharacterized protein n=2 Tax=Ostreococcus tauri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1173contigC-tenellus_contig1173:8621..10718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G800
Model size1706
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons3
Evalue2.56e-59
EggNOG OGs2CXBB@1|root,2SA2A@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_009610.1
Cds size573
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.969271-UTR-C-tenellus_contig1173:8620..96711680789191.969271-UTR-C-tenellus_contig1173:8620..9671Choristocarpus tenellus KU2346UTRC-tenellus_contig1173 8621..9671 -
1680789192.0098433-UTR-C-tenellus_contig1173:10636..107181680789192.0098433-UTR-C-tenellus_contig1173:10636..10718Choristocarpus tenellus KU2346UTRC-tenellus_contig1173 10637..10718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.9802742-CDS-C-tenellus_contig1173:9671..97131680789191.9802742-CDS-C-tenellus_contig1173:9671..9713Choristocarpus tenellus KU2346CDSC-tenellus_contig1173 9672..9713 -
1680789191.9928956-CDS-C-tenellus_contig1173:9936..101521680789191.9928956-CDS-C-tenellus_contig1173:9936..10152Choristocarpus tenellus KU2346CDSC-tenellus_contig1173 9937..10152 -
1680789192.0013595-CDS-C-tenellus_contig1173:10321..106361680789192.0013595-CDS-C-tenellus_contig1173:10321..10636Choristocarpus tenellus KU2346CDSC-tenellus_contig1173 10322..10636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1173.2.1prot_C-tenellus_contig1173.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1173 9672..10636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1173.2.1

>prot_C-tenellus_contig1173.2.1 ID=prot_C-tenellus_contig1173.2.1|Name=mRNA_C-tenellus_contig1173.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=191bp
MKTKAFGVLTTLATICCCDVFAFQASPSRSLQRPHLPRLSFSGDGMDSLS
FATHMLADAVGRGGTAVADQVSYVPRETIENFPQIVVGSGACVLAYAWAA
YEFGKRIVTQRRCAVCNGSGLVSSNRDGVHFERPRKCYACGGFLPWENWG
RFWQSNMDVGNGGVLQRPARDYDALNKAARETQGDTAGDS*
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mRNA from alignment at C-tenellus_contig1173:8621..10718-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1173.2.1 ID=mRNA_C-tenellus_contig1173.2.1|Name=mRNA_C-tenellus_contig1173.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2098bp|location=Sequence derived from alignment at C-tenellus_contig1173:8621..10718- (Choristocarpus tenellus KU2346)
AAATACCTGACTTGGTGATATCTGAAACGCCCAAGCTCAGTGCTGAGTTG TGGAGAGTCTACCTCCATCAGGTGTGACAAATATGAAGACTAAAGCTTTT GGCGTGCTGACTACCTTGGCAACAATTTGCTGTTGTGATGTTTTCGCCTT CCAAGCATCGCCATCCAGGTCATTGCAACGTCCTCATTTACCACGCCTAA GCTTCTCTGGAGATGGCATGGATTCCTTGTCATTTGCTACGCATATGTTG GCAGATGCGGTAGGCCGAGGAGGTACCGCGGTGGCTGATCAGGTCTCATA CGTTCCGCGAGAGACCATTGAAAACTTTCCCCAAATCGTGGTTGGGTCTG GTGCCTGCGTTCTGGCTTACGCTTGGGCTGCATACGAGTTCGGTAAGGTG AGGATCCATCCTAAGATCTTTTCGATATCTTAAAGAATTGAGAGGTAACG ATGATTTTGATCTATCTCCCTTTTCCCTATTGAGGCTGGACTGCACCTTG GCAACGAGTCCCATCCATGGTACCTCCCTCCCACTCCTCGCCTTTCCCAC TCGTTTGATCTGGAAGCGTATCGTCACCCAACGTCGATGTGCAGTATGCA ACGGGTCGGGGTTGGTTTCTTCAAACAGGGATGGGGTACATTTTGAACGG CCGCGCAAGTGCTACGCCTGTGGGGGCTTCCTTCCGTGGGAGAACTGGGG GCGTTTTTGGCAAAGCAACATGGATGTAGGCAATGGTGGAGTGCTTCAGC GACCGGCCAGAGATTATGATGCCCTCAACAAGGCAAGTATCACACCCCTA TATTATTGCCAGGCTATCGATACGCTCTTAGTCATGAGACCCATGTGTGA CAGCCGTCAGACGACCTGATGCCTCTTTACTGCTCTTTCCACTGTGTCTT CTGCTAAGTTCAGATGCATGGCATCATCTTACACAAATTAGTACGATGAT GAAACGCCCACTCGCTTGTTTGCGTTCCCCCTACACCTGAATGAGATGCC TACAGGCAGCCAGAGAGACACAGGGAGACACTGCTGGAGACTCCTAGCCA TGCGAGTGTATCCAGAATTTTCAACTTTATTTACGAATCCCACTGATTTT GAAGTGCTTTGTGGGTGGAGGCTGCTAACCTGGTGCTCTATTTTGACTTG ATTGATAAGAAACCTACTTGTCACGCTTTGGGCGGCATTATTGCCAACCA TGTCAAAAATTGGTCCTGATGCAAGATTTGAAACAACCGGGCTCATTGTT TCTTCAAAAAGTCCTCATTGAGTATTATATTCGTATTTAAAGAACGTAAT ATTTATGTAGGCGTTATATGTGTTTGGCAGCCGTTCGGTTAGCAAGGAAC ACACAGGGATAATGTAGTCACCAATGTTTTTGTATTTTGAGTGGCACTTT GGTGAAGTGATGAAGCTGTGTTTGGCGGATTGCAGTAACTGGAAAGTCCT ACCCTGCCCATTTTCCACATGGAATCTGACTAAGAGAGCCTCATTTTTTT TCTCATTTCGTGGAAGAAGTTCTTCAAATCAAGTGTTAACTAGCATATGC TTGATAGGTTCGGTTGTATAGTGCAGTATATATATGCACACTAGTTCACA AGGGTGTGAACCAACAGCAGAGATGATGTATATGAACTAAAGAGGATGCC TGCCGATTTAAGTGTTACACAAGTTTCAAGAGTGAAGTATGTGATAACCA AGTTGTTCAGTCCATCTTGTTCAGTCAGATAAAACAGAACCTTAACGTAC ACACTGTCCTACTGATGATTTGATTTCAGAAGTATTTAGCTCTCACTTGT ACACAAGCGTGAAGATTATGTTGGGTATTATAGGATACAGATATTCCCAT GGTCAAGACTCTCATTATCATTATTGTTCTGCTAGGTCGCATTAAGAGCA GAGGCAGTTGACCACACCTGAATTGTGTTTTCTTTATCATCAAAAAAGTC AAGGTCAGCTACAACATTATTTTCACACTTCAATGTGTGTATATATATTG ACAGTACACTGACACAGCACAAGGGACAATACATGATTCCTGCCTCCCCC TGTCGCAGAATGTACTGCTTTTTGCTTCCACCCTTCATGCAGTGCCCT
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Coding sequence (CDS) from alignment at C-tenellus_contig1173:8621..10718-

>mRNA_C-tenellus_contig1173.2.1 ID=mRNA_C-tenellus_contig1173.2.1|Name=mRNA_C-tenellus_contig1173.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=573bp|location=Sequence derived from alignment at C-tenellus_contig1173:8621..10718- (Choristocarpus tenellus KU2346)
ATGAAGACTAAAGCTTTTGGCGTGCTGACTACCTTGGCAACAATTTGCTG
TTGTGATGTTTTCGCCTTCCAAGCATCGCCATCCAGGTCATTGCAACGTC
CTCATTTACCACGCCTAAGCTTCTCTGGAGATGGCATGGATTCCTTGTCA
TTTGCTACGCATATGTTGGCAGATGCGGTAGGCCGAGGAGGTACCGCGGT
GGCTGATCAGGTCTCATACGTTCCGCGAGAGACCATTGAAAACTTTCCCC
AAATCGTGGTTGGGTCTGGTGCCTGCGTTCTGGCTTACGCTTGGGCTGCA
TACGAGTTCGGTAAGCGTATCGTCACCCAACGTCGATGTGCAGTATGCAA
CGGGTCGGGGTTGGTTTCTTCAAACAGGGATGGGGTACATTTTGAACGGC
CGCGCAAGTGCTACGCCTGTGGGGGCTTCCTTCCGTGGGAGAACTGGGGG
CGTTTTTGGCAAAGCAACATGGATGTAGGCAATGGTGGAGTGCTTCAGCG
ACCGGCCAGAGATTATGATGCCCTCAACAAGGCAGCCAGAGAGACACAGG
GAGACACTGCTGGAGACTCCTAG
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