mRNA_C-tenellus_contig11727.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11727.3.1
Unique NamemRNA_C-tenellus_contig11727.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11727.3.1 vs. uniprot
Match: A0A196SD32_BLAHN (Calmodulin n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SD32_BLAHN)

HSP 1 Score: 60.1 bits (144), Expect = 7.250e-10
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 LRQHFAQFDVDKDGQISKNELRNVLEGLGETVSESQLQTSMNAADSDGDGKVCFSEMVEL 180
            + + FA FDVDKDG I+K+ELR V+  LGE++++ QL   +  AD+DGDGK+   +   L
Sbjct:   87 MEEAFAVFDVDKDGYITKSELRQVMNRLGESLTDEQLDAMIREADTDGDGKIDIKDFRSL 146
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BLAST of mRNA_C-tenellus_contig11727.3.1 vs. uniprot
Match: A0A835EN61_9POAL (Uncharacterized protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835EN61_9POAL)

HSP 1 Score: 57.4 bits (137), Expect = 3.030e-9
Identity = 26/60 (43.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 LRQHFAQFDVDKDGQISKNELRNVLEGLGETVSESQLQTSMNAADSDGDGKVCFSEMVEL 180
            LR+ F  FD D++G IS++ELR+VL+ LGE +S+ +L   +  AD+DGDG++ ++E  ++
Sbjct:   12 LREAFRVFDQDQNGFISRDELRHVLQNLGERLSDEELAEMLREADADGDGQINYNEFAKV 71
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BLAST of mRNA_C-tenellus_contig11727.3.1 vs. uniprot
Match: A0A1D6EIL5_MAIZE (Calmodulin n=9 Tax=Andropogoneae TaxID=147429 RepID=A0A1D6EIL5_MAIZE)

HSP 1 Score: 58.5 bits (140), Expect = 3.550e-9
Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 LRQHFAQFDVDKDGQISKNELRNVLEGLGETVSESQLQTSMNAADSDGDGKVCFSEMVE 177
            LR+ F  FD D++G IS++ELR+VL+ LGE +SE +L   +  AD+DGDG++ +SE  +
Sbjct:   91 LREAFHVFDQDQNGFISRDELRHVLQNLGERLSEEELAEMLREADADGDGQINYSEFAK 149
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BLAST of mRNA_C-tenellus_contig11727.3.1 vs. uniprot
Match: A0A1X2G6I3_9FUNG (Calmodulin n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G6I3_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 5.690e-9
Identity = 26/60 (43.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 LRQHFAQFDVDKDGQISKNELRNVLEGLGETVSESQLQTSMNAADSDGDGKVCFSEMVEL 180
            LRQ F  FD D +  ISK+ELR V++ +GE ++++QL+  +  AD+DGDG++ + E V++
Sbjct:   86 LRQAFQVFDKDGNNYISKDELRQVMDSVGEKLTQAQLEEMIQEADTDGDGRINYEEFVKM 145
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BLAST of mRNA_C-tenellus_contig11727.3.1 vs. uniprot
Match: A0A0A9A8M9_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9A8M9_ARUDO)

HSP 1 Score: 57.4 bits (137), Expect = 6.780e-9
Identity = 27/60 (45.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 LRQHFAQFDVDKDGQISKNELRNVLEGLGETVSESQLQTSMNAADSDGDGKVCFSEMVEL 180
            LR+ F  FD D++G IS++ELR+VLE LGE +S+ +L   +  AD DGDG++ ++E  ++
Sbjct:   76 LREAFRVFDQDQNGFISRDELRHVLENLGERLSDEELAEMLREADVDGDGQINYTEFAKV 135
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BLAST of mRNA_C-tenellus_contig11727.3.1 vs. uniprot
Match: A0A811QHF1_9POAL (Hypothetical protein n=2 Tax=PACMAD clade TaxID=147370 RepID=A0A811QHF1_9POAL)

HSP 1 Score: 57.4 bits (137), Expect = 8.930e-9
Identity = 26/60 (43.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 LRQHFAQFDVDKDGQISKNELRNVLEGLGETVSESQLQTSMNAADSDGDGKVCFSEMVEL 180
            LR+ F  FD D++G IS++ELR+VL+ LGE +S+ +L   +  AD+DGDG++ ++E  ++
Sbjct:   91 LREAFRVFDQDQNGFISRDELRHVLQNLGEKLSDEELAEMLREADADGDGQINYTEFAKV 150
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BLAST of mRNA_C-tenellus_contig11727.3.1 vs. uniprot
Match: A0A3L6F2F5_MAIZE (Putative calmodulin-like protein 2 n=2 Tax=Zea mays TaxID=4577 RepID=A0A3L6F2F5_MAIZE)

HSP 1 Score: 57.4 bits (137), Expect = 9.570e-9
Identity = 26/60 (43.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 LRQHFAQFDVDKDGQISKNELRNVLEGLGETVSESQLQTSMNAADSDGDGKVCFSEMVEL 180
            LR+ F  FD D++G IS++ELR+VL+ LGE +S+ +L   +  AD+DGDG++ ++E  ++
Sbjct:   69 LREAFRVFDQDQNGFISRDELRHVLQNLGERLSDDELAEMLREADADGDGQINYTEFTKV 128
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BLAST of mRNA_C-tenellus_contig11727.3.1 vs. uniprot
Match: A0A2G4T4L9_RHIZD (EF-hand n=5 Tax=Rhizopus TaxID=4842 RepID=A0A2G4T4L9_RHIZD)

HSP 1 Score: 56.2 bits (134), Expect = 3.220e-8
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 LRQHFAQFDVDKDGQISKNELRNVLEGLGETVSESQLQTSMNAADSDGDGKVCFSEMVEL 180
            L+  F +FD + DGQIS+ ELR V++GLGE ++E +++  MN AD++ DG + F E  +L
Sbjct:  107 LKMCFDKFDKNGDGQISEEELREVMKGLGEHLTEKEIKDMMNDADTNKDGHIDFEEFKQL 166
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BLAST of mRNA_C-tenellus_contig11727.3.1 vs. uniprot
Match: D8LW02_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LW02_BLAHO)

HSP 1 Score: 56.6 bits (135), Expect = 3.680e-8
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 LRQHFAQFDVDKDGQISKNELRNVLEGLGETVSESQLQTSMNAADSDGDGKVCFSEMVEL 180
            + + FA FDVDKDG I+K+ELR V+  LGE ++++QL   +  AD D DG++  +E   L
Sbjct:   87 MSEAFAVFDVDKDGYITKSELRQVMNRLGENLTDAQLDAMIKEADGDKDGRIDINEFRSL 146
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BLAST of mRNA_C-tenellus_contig11727.3.1 vs. uniprot
Match: G7YE37_CLOSI (Calmodulin n=2 Tax=Clonorchis sinensis TaxID=79923 RepID=G7YE37_CLOSI)

HSP 1 Score: 55.8 bits (133), Expect = 5.150e-8
Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    4 RQHFAQFDVDKDGQISKNELRNVLEGLGETVSESQLQTSMNAADSDGDGKVCFSEMVEL 180
            R+ FA+FD D DG I   EL   +  LGET+S   +   M  AD+DGDGKV F+E + +
Sbjct:  119 RRVFAEFDCDGDGFIDATELEKTMTSLGETLSREDIMDMMREADTDGDGKVSFTEFLNV 177
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11727.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A196SD32_BLAHN7.250e-1046.67Calmodulin n=1 Tax=Blastocystis sp. subtype 1 (str... [more]
A0A835EN61_9POAL3.030e-943.33Uncharacterized protein n=1 Tax=Digitaria exilis T... [more]
A0A1D6EIL5_MAIZE3.550e-947.46Calmodulin n=9 Tax=Andropogoneae TaxID=147429 RepI... [more]
A0A1X2G6I3_9FUNG5.690e-943.33Calmodulin n=1 Tax=Hesseltinella vesiculosa TaxID=... [more]
A0A0A9A8M9_ARUDO6.780e-945.00Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
A0A811QHF1_9POAL8.930e-943.33Hypothetical protein n=2 Tax=PACMAD clade TaxID=14... [more]
A0A3L6F2F5_MAIZE9.570e-943.33Putative calmodulin-like protein 2 n=2 Tax=Zea may... [more]
A0A2G4T4L9_RHIZD3.220e-845.00EF-hand n=5 Tax=Rhizopus TaxID=4842 RepID=A0A2G4T4... [more]
D8LW02_BLAHO3.680e-845.00Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
G7YE37_CLOSI5.150e-845.76Calmodulin n=2 Tax=Clonorchis sinensis TaxID=79923... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11727contigC-tenellus_contig11727:1855..2540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog71139.XP_010024215.1
PFAMsEF-hand_1,EF-hand_7
Model size180
Max annot lvl35493|Streptophyta
KEGG koko:K02183,ko:K13448
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0005513,GO:0007154,GO:0007165,GO:0008150,GO:0009593,GO:0009987,GO:0010035,GO:0010038,GO:0019722,GO:0019932,GO:0023052,GO:0035556,GO:0042221,GO:0050789,GO:0050794,GO:0050896,GO:0051592,GO:0051606,GO:0051716,GO:0065007
Exons2
Evalue3.52e-10
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota,37TRC@33090|Viridiplantae,3GI7D@35493|Streptophyta
Descriptioncalmodulin-like protein
Cds size180
COG categoryT
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.874416-CDS-C-tenellus_contig11727:1854..19201680789191.874416-CDS-C-tenellus_contig11727:1854..1920Choristocarpus tenellus KU2346CDSC-tenellus_contig11727 1855..1920 -
1680789191.8862467-CDS-C-tenellus_contig11727:2426..25401680789191.8862467-CDS-C-tenellus_contig11727:2426..2540Choristocarpus tenellus KU2346CDSC-tenellus_contig11727 2427..2540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11727.3.1prot_C-tenellus_contig11727.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11727 1855..2540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11727.3.1

>prot_C-tenellus_contig11727.3.1 ID=prot_C-tenellus_contig11727.3.1|Name=mRNA_C-tenellus_contig11727.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=60bp
LRQHFAQFDVDKDGQISKNELRNVLEGLGETVSESQLQTSMNAADSDGDG
KVCFSEMVEL
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mRNA from alignment at C-tenellus_contig11727:1855..2540-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11727.3.1 ID=mRNA_C-tenellus_contig11727.3.1|Name=mRNA_C-tenellus_contig11727.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=686bp|location=Sequence derived from alignment at C-tenellus_contig11727:1855..2540- (Choristocarpus tenellus KU2346)
CTGCGTCAACATTTTGCGCAATTCGACGTCGACAAGGATGGCCAGATATC
TAAGAACGAGCTACGGAATGTGCTGGAAGGCTTGGGCGAGACAGTGTCTG
AATCACAGCTACAGGTGCTCACTTGATTTCCTTTTAGTTTTCATTGATAT
AATTGCTGCTTGTGGCTGCAAACCCATGCTTACACCTCACCCCAATCAGC
AAATTGCAACATTATTTTGAAATCTCGTTCAAGTAATAGCAATCTTGGGT
AGTCATTGGTGAGTGACAAAATGTGGACTGTCGAAGAGGGGAACAAGTCA
CATCGTCAAGGCAAGGTTTTTCTGATATGGCATTTACTTGTTTTTTCTGC
ATGCAAAAGCTTTTGCTGCAGCCGAAGAATAGATCTAAATTATCCCCACG
ATTTTTTTAATGGAAGCAGAGCGTGCAAGTCATGGTGTTACACTGTTGGT
CTGCGGAGGGGTCACGAGTCTAGACTATGCATCACAATGAAGCCCCATTG
GTCACTAATGTCTTTTTGTTCTTATAGTGTCAAGAGATTTTGTAGTTTTG
CATCTTCCCTCCTATTGATGCAATTCACTCCCACCTGTTGTCATGGTGGT
CACTACATCCCTCTTTTCAGACGTCGATGAATGCAGCAGATTCTGACGGT
GATGGTAAGGTGTGTTTTTCGGAGATGGTGGAGTTA
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Coding sequence (CDS) from alignment at C-tenellus_contig11727:1855..2540-

>mRNA_C-tenellus_contig11727.3.1 ID=mRNA_C-tenellus_contig11727.3.1|Name=mRNA_C-tenellus_contig11727.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=180bp|location=Sequence derived from alignment at C-tenellus_contig11727:1855..2540- (Choristocarpus tenellus KU2346)
CTGCGTCAACATTTTGCGCAATTCGACGTCGACAAGGATGGCCAGATATC
TAAGAACGAGCTACGGAATGTGCTGGAAGGCTTGGGCGAGACAGTGTCTG
AATCACAGCTACAGACGTCGATGAATGCAGCAGATTCTGACGGTGATGGT
AAGGTGTGTTTTTCGGAGATGGTGGAGTTA
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