mRNA_C-tenellus_contig11727.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11727.1.1
Unique NamemRNA_C-tenellus_contig11727.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11727.1.1 vs. uniprot
Match: D8LBI9_ECTSI (Fimbrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI9_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 2.930e-28
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 1
Query:    1 MAYHSYSDDERMAFTEHINNCLIADKIVASKLPMDPLSEALFSECSDGLLLCKLVNLAEFDTIDTR 198
            MAYHSYSDDERMAFTEHINNCL AD +V  +LPMDPLSE LF++ SDGL+LCKL+NLAEFDTID R
Sbjct:  114 MAYHSYSDDERMAFTEHINNCLAADPVVGPRLPMDPLSEDLFTQTSDGLILCKLINLAEFDTIDAR 179          
BLAST of mRNA_C-tenellus_contig11727.1.1 vs. uniprot
Match: A0A836CF36_9STRA (Actin binding protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF36_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.040e-21
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    7 YHSYSDDERMAFTEHINNCLIADKIVASKLPMDPLSEALFSECSDGLLLCKLVNLAEFDTIDTR 198
            +HSYSD+ER+AFTEHINNCL  DK V  +LPM   SE LFSE +DGLLLCKL+N AEFDTID R
Sbjct:  109 HHSYSDEERIAFTEHINNCLQRDKDVGPRLPMQTESEQLFSEVADGLLLCKLINHAEFDTIDER 172          
BLAST of mRNA_C-tenellus_contig11727.1.1 vs. uniprot
Match: A0A835YV37_9STRA (Actin bundling protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV37_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.070e-20
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    7 YHSYSDDERMAFTEHINNCLIADKIVASKLPMDPLSEALFSECSDGLLLCKLVNLAEFDTIDTR 198
            +HSYS++ERMAFTEHINNCL  D  V S+LPM   SE LFSE SDGLLLCKL+N AE+DTID R
Sbjct:  113 HHSYSNEERMAFTEHINNCLQRDPHVGSRLPMPLQSEKLFSEVSDGLLLCKLINHAEYDTIDER 176          
BLAST of mRNA_C-tenellus_contig11727.1.1 vs. uniprot
Match: A0A7S2S2Z4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2Z4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.190e-15
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   10 HSYSDDERMAFTEHINNCLIADKIVASKLPMDPLSEALFSECSDGLLLCKLVNLAEFDTIDTR 198
            HS S++ER AF+EHIN  L  D  ++ +LPMDP SE LFS+C+DG++  KLVNL E  T+D R
Sbjct:  131 HSISEEERFAFSEHINRVLGPDPFLSQRLPMDPNSEQLFSQCADGIIFAKLVNLVEMGTVDER 193          
BLAST of mRNA_C-tenellus_contig11727.1.1 vs. uniprot
Match: A0A067BSR4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BSR4_SAPPC)

HSP 1 Score: 76.3 bits (186), Expect = 1.810e-14
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   10 HSYSDDERMAFTEHINNCLIADKIVASKLPMDPLSEALFSECSDGLLLCKLVNLAEFDTIDTRWV 204
            HSYSD+E+ AF EHINNCL  D  +A  LP+DP    LF+   DG+LLCKL+NLA  DTID R V
Sbjct:  262 HSYSDEEKTAFAEHINNCLSGDAHLAY-LPIDPSGHDLFASVMDGILLCKLINLAVPDTIDLRAV 325          
BLAST of mRNA_C-tenellus_contig11727.1.1 vs. uniprot
Match: A0A5A8DLI9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DLI9_CAFRO)

HSP 1 Score: 75.1 bits (183), Expect = 4.580e-14
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   10 HSYSDDERMAFTEHINNCLIADKIVASK--LPMDPLSEALFSECSDGLLLCKLVNLAEFDTIDTRWV 204
            H+YS+DE++AF+EH NNC   D+   S   +P+DP S+ LF+   +G++LCKLVNLA  DTID R V
Sbjct:  114 HTYSEDEKVAFSEHFNNCFGEDEFCTSSGLIPIDPTSDELFTHIGNGIILCKLVNLAARDTIDERTV 180          
BLAST of mRNA_C-tenellus_contig11727.1.1 vs. uniprot
Match: A0A482ULF8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ULF8_9ARCH)

HSP 1 Score: 68.9 bits (167), Expect = 1.110e-13
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    4 AYHSYSDDERMAFTEHINNCLIADKIVASKLPMDPLSEALFSECSDGLLLCKLVNL 171
            A HS+S+DE+ AF+EHIN CL +D  +A  LPM+P S  LFS+  DG++LCKL+NL
Sbjct:   18 ASHSFSEDEKEAFSEHINICLSSDPDLARLLPMNPSSMDLFSKTQDGMILCKLINL 73          
BLAST of mRNA_C-tenellus_contig11727.1.1 vs. uniprot
Match: A0A662X4Y4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Y4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.620e-13
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   10 HSYSDDERMAFTEHINNCLIADKIVASKLPMDPLSEALFSECSDGLLLCKLVNLAEFDTIDTRWV 204
            HSYS++E +AFTEHINNCL ADK VAS +P++ +   LF+   DG+L+CKL+N A  +TID R V
Sbjct:  577 HSYSEEETVAFTEHINNCLHADKDVASLMPIN-IEGGLFTAICDGVLMCKLINAAVPETIDERAV 640          
BLAST of mRNA_C-tenellus_contig11727.1.1 vs. uniprot
Match: A0A1V9YBE8_9STRA (Fimbrin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YBE8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.990e-13
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   10 HSYSDDERMAFTEHINNCLIADKIVASKLPMDPLSEALFSECSDGLLLCKLVNLAEFDTIDTRWV 204
            HSYS++E+ AF EHINNCL  D  +   LP++P    LF+  +DG+LLCKL+NLA  DTID R V
Sbjct:  259 HSYSEEEKSAFAEHINNCLAGDAHLGY-LPINPAGHDLFASVADGILLCKLINLAVPDTIDMRAV 322          
BLAST of mRNA_C-tenellus_contig11727.1.1 vs. uniprot
Match: A0A8J6FUB5_ELECQ (Uncharacterized protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6FUB5_ELECQ)

HSP 1 Score: 72.0 bits (175), Expect = 5.540e-13
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   10 HSYSDDERMAFTEHINNCLIADKIVASKLPMDPLSEALFSECSDGLLLCKLVNLAEFDTIDTR 198
            HSYSD+E++AF   +N  L  D  V   LPMDP +++LF+   DG+LLCK++NL+E DTID R
Sbjct:  139 HSYSDEEKVAFVNWLNKALKGDPDVKHLLPMDPSNDSLFTSLRDGILLCKMINLSEPDTIDER 201          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11727.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBI9_ECTSI2.930e-2880.30Fimbrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A836CF36_9STRA3.040e-2171.88Actin binding protein (Fragment) n=1 Tax=Tribonema... [more]
A0A835YV37_9STRA1.070e-2071.88Actin bundling protein n=1 Tax=Tribonema minus Tax... [more]
A0A7S2S2Z4_9STRA5.190e-1555.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A067BSR4_SAPPC1.810e-1460.00Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A5A8DLI9_CAFRO4.580e-1452.24Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A482ULF8_9ARCH1.110e-1357.14Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A662X4Y4_9STRA1.620e-1356.92Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A1V9YBE8_9STRA2.990e-1355.38Fimbrin-like protein n=1 Tax=Achlya hypogyna TaxID... [more]
A0A8J6FUB5_ELECQ5.540e-1352.38Uncharacterized protein n=1 Tax=Eleutherodactylus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11727contigC-tenellus_contig11727:360..1264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LBI9
PFAMsCH,EF-hand_7
Model size228
Max annot lvl2759|Eukaryota
KEGG koko:K17275,ko:K17276
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.8e-29
EggNOG OGsCOG5069@1|root,KOG0046@2759|Eukaryota
Descriptionactin filament network formation
Cds size228
COG categoryZ
BRITEko00000,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.8213797-CDS-C-tenellus_contig11727:359..5091680789191.8213797-CDS-C-tenellus_contig11727:359..509Choristocarpus tenellus KU2346CDSC-tenellus_contig11727 360..509 -
1680789191.8375266-CDS-C-tenellus_contig11727:1186..12641680789191.8375266-CDS-C-tenellus_contig11727:1186..1264Choristocarpus tenellus KU2346CDSC-tenellus_contig11727 1187..1264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11727.1.1prot_C-tenellus_contig11727.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11727 360..1264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11727.1.1

>prot_C-tenellus_contig11727.1.1 ID=prot_C-tenellus_contig11727.1.1|Name=mRNA_C-tenellus_contig11727.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=76bp
MAYHSYSDDERMAFTEHINNCLIADKIVASKLPMDPLSEALFSECSDGLL
LCKLVNLAEFDTIDTRWVRGGDCSRG
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mRNA from alignment at C-tenellus_contig11727:360..1264-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11727.1.1 ID=mRNA_C-tenellus_contig11727.1.1|Name=mRNA_C-tenellus_contig11727.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=905bp|location=Sequence derived from alignment at C-tenellus_contig11727:360..1264- (Choristocarpus tenellus KU2346)
ATGGCATACCACTCGTACTCAGACGATGAGAGGATGGCCTTCACAGAGCA CATCAATAATTGCCTCATCGCAGACAAGGTACTTTTTTGCCTTCCGTGCA TTTTGATATTCTACAGGAATTCAGTGCAATAGAGACTGCGGCGGGGGGGT TGGGGGAGGTCACCGTGAGGTCCTTTTTTTGCCTACTTTAGTTTTGCTTG TTATAGACTGATCTGAAAACTGTAATTTTAGGTTGTTGGCTTTTGCATGG CAATTTCTTTTACGTACCTGTACCTGCAATATTATTTGTTTCGCTTTTAT GTCATTAGTTGTAACGATGTGTTGTTTTTTTGAAGGTAATTTTTGTGTAG TGGATGGAGCCATCGCTGACGTTTTAAAGTTTTAAAAGTTTTAAAAGTTT TTAAGTTTATTTATTTATTTTTTTCCGTTACCAAGATTTTTTTTTTTTGT TGAATTGGAGTGAAAACATCCGTTTTGTTCTTTTGTTGGAAAATTTTCAG CGTACATGCACCGACGTGCTTAGAGCCAATGTTCCCAAGCAACGAGAAAC AGCCCAGTAGGTAATGTGTTTTCATTCCTCCATAGCCCCTCCTCATGACG AATCTACTCATTGTTATATTCTCCCCCTTGGTTCTTGTACTTGGGGGTAT GCGTGCTCCAATGATGCTCCAATGCTGTTGGTGTATTGTGCGCTGACTGA TGTTTGTTGTGAACTGGGGGTGTTTCAACTGGGGCTGGGGCGGGGGAGGG ACCAGATTGTGGCAAGCAAACTGCCAATGGACCCTCTTTCGGAAGCATTG TTCTCGGAATGCTCGGATGGTTTGCTGCTGTGTAAGCTTGTGAACCTTGC TGAGTTTGACACTATCGACACGAGGTGGGTTAGAGGAGGGGATTGTAGTC GCGGA
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Coding sequence (CDS) from alignment at C-tenellus_contig11727:360..1264-

>mRNA_C-tenellus_contig11727.1.1 ID=mRNA_C-tenellus_contig11727.1.1|Name=mRNA_C-tenellus_contig11727.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=228bp|location=Sequence derived from alignment at C-tenellus_contig11727:360..1264- (Choristocarpus tenellus KU2346)
ATGGCATACCACTCGTACTCAGACGATGAGAGGATGGCCTTCACAGAGCA
CATCAATAATTGCCTCATCGCAGACAAGATTGTGGCAAGCAAACTGCCAA
TGGACCCTCTTTCGGAAGCATTGTTCTCGGAATGCTCGGATGGTTTGCTG
CTGTGTAAGCTTGTGAACCTTGCTGAGTTTGACACTATCGACACGAGGTG
GGTTAGAGGAGGGGATTGTAGTCGCGGA
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