mRNA_C-tenellus_contig11720.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: D8LND0_ECTSI (Replication factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI) HSP 1 Score: 338 bits (868), Expect = 6.640e-107 Identity = 168/227 (74.01%), Postives = 192/227 (84.58%), Query Frame = 1 Query: 4 VMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLVGVDKSIRAERTGDASAAVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFEVYYEW 684 + QVLHALQMWSRKSSKMTY +KG +S IEKDK R+GPF+ AR ILG ASR+ LRDRYE FFTDYSLLPLLVHQNYL+SL+ VD +R E T ASAAVSDAD+ISGKMRGDVQHWELLP+QAALNVRVGS+G GSLG+P+FPKWLGNYS+ENK RRLL E++THLN+S+SGG EAVRLSY+ L+ LT+PL E GA GA CV +LEEYGLSRDDLFEV E+ Sbjct: 663 IRQVLHALQMWSRKSSKMTYMNLKGGISAIEKDKNQRIGPFDAARSILGGASRTPLRDRYELFFTDYSLLPLLVHQNYLSSLMQVDAKVRTEVTAAASAAVSDADIISGKMRGDVQHWELLPAQAALNVRVGSVGGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNASVSGGTEAVRLSYIHFLKRLLTQPLREEGAAGAPACVDLLEEYGLSRDDLFEVLPEF 889
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: A0A7S2WPH2_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPH2_9STRA) HSP 1 Score: 216 bits (550), Expect = 6.220e-65 Identity = 112/223 (50.22%), Postives = 154/223 (69.06%), Query Frame = 1 Query: 4 VMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLVGV-DKSIRAERTGDASAAVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFE 669 + QVL+ LQMW R SS ++Y MK + +EKD +LR+ F+G R IL ++ L R ++FF DYSL+PLLV QNY++S+ + ++ R AS A+SD D+I +R D Q+W LLP QA + VRVG+ RG LG+P FP+WLG S NK RRLL ++ HL+S++SGG EAVRL+Y P LR L PLL++GAEG +E ++ML+EYG+SR+DLFE Sbjct: 103 IRQVLNCLQMWRRNSSTVSYMDMKSRIWQVEKDSILRMTAFDGVRSILDPKDQT-LFQRQDSFFLDYSLVPLLVQQNYVDSIQSCHEMGDKSTRMSAASEALSDCDLIDSMLRRD-QNWSLLPFQAVMTVRVGTHTRGGLGFPKFPEWLGKNSTGNKRRRLLGDLAMHLSSAVSGGQEAVRLNYAPVLRRRLVSPLLQKGAEGVQETIAMLDEYGMSREDLFE 323
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: A0A835YT94_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT94_9STRA) HSP 1 Score: 185 bits (470), Expect = 3.700e-51 Identity = 109/274 (39.78%), Postives = 146/274 (53.28%), Query Frame = 1 Query: 4 VMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLVGVDKSIRAERTGDASAAVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLN--------------------SSISGGPEAVRLSYL--------------------------------PTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFE 669 + Q LHA+QMWSR S M Y +K L + KDK RV F+GARMI + S +RYEAFFTDY L+PLLV QN+ +++ +K+ +R A+ A+SDA++ +RGDV HWELLP AAL++RVG G +G+P FP+WLG S K RRL++E+ TH+N S ++ EAV L Y+ P L +T PL GA+G E ++ML+EYGLSRDDL E Sbjct: 281 IRQCLHAMQMWSRGSRTMAYMEVKDGLGAVSKDKSQRVSAFDGARMIFQTKSIPQA-ERYEAFFTDYGLVPLLVQQNWPDAIAKSNKATMMQRMARAADAISDAELAGSMVRGDVNHWELLPLYAALHLRVGLECDGYIGFPGFPQWLGKNSAATKRRRLVAEINTHMNARQARTPSPDNDHLPLESLLSLVNAEREAVWLDYVSSSVLSVRLIVIQSEREKRVXXXXXXXXXXXVPVLTRVITEPLRSAGADGVGEAMAMLDEYGLSRDDLLE 553
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: F0XZ23_AURAN (AAA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ23_AURAN) HSP 1 Score: 178 bits (452), Expect = 1.470e-48 Identity = 104/235 (44.26%), Postives = 138/235 (58.72%), Query Frame = 1 Query: 4 VMQVLHALQMWSRKSSKM---TYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSL----------VGVDKSIRAERTGDASAAVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFE 669 + Q L+ALQMW+ + +YT MK LSTI KD + RV PF+GA++IL R S DR +AFFTDYSL+PLLV NY+ + VD+ + R A+A +SD D+I ++ D Q W LL ++A+L VR G + GS P F W G S K +R E+ HL S ISG +AVR YLP L +TRPL++ GA G E ++ L+EYGLS+DDLFE Sbjct: 344 IRQCLNALQMWATSEGEAETCSYTAMKDRLSTISKDAIQRVTPFDGAKIILSDVRRKSHFDRCDAFFTDYSLVPLLVQHNYVTAASAARDAQGKPCSVDEKLN--RLEAAAACLSDVDLIDRRVHAD-QEWGLLTTEASLTVRAGVLVDGSCMAPQFSAWFGKNSTTKKSKRQCGELALHLGSRISGTRDAVRRDYLPMLAKYVTRPLVDGGAAGVAETIARLDEYGLSKDDLFE 575
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: A0A812KXV0_9DINO (Replication factor C subunit 1 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KXV0_9DINO) HSP 1 Score: 169 bits (427), Expect = 1.400e-44 Identity = 89/236 (37.71%), Postives = 139/236 (58.90%), Query Frame = 1 Query: 4 VMQVLHALQMWSRK----SSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLV---GVDKSIRAERTGDASAAVSDADMISG--KMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFEVYYEW 684 + Q +H LQMW+ ++T+ MK + +T +KDK LR+ F+ + + S+ +RY +FF DY L+PLLV Q S+ G + + R DA+ A++ +D++S +MRG W LL S AA+NV+ GS+ +P FP+W G S K RRLL E++ HLN +SGG +++R+ Y+ TL+ A P+LE+GA+G + ++ML+ YGLS+ DL E + W Sbjct: 523 IRQTVHMLQMWANSPHGADGRLTFAAMKAAEATSQKDKSLRLNGFDVTKTLFSDVRSSTFTERYNSFFVDYDLIPLLVQQAMPQSVQTPRGEAPTSKLARMADAADAIALSDVMSNCVRMRGQ---WSLLTSVAAMNVKAAYHASGSVAFPGFPEWFGKNSTMGKRRRLLGELSMHLNHRVSGGSQSLRMHYMETLKSAFYAPMLEKGADGVPDTIAMLDSYGLSKQDLTESCHAW 755
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: A0A2R5GMW3_9STRA (Replication factor C subunit 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMW3_9STRA) HSP 1 Score: 155 bits (392), Expect = 7.830e-40 Identity = 87/232 (37.50%), Postives = 134/232 (57.76%), Query Frame = 1 Query: 4 VMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRD-RYEAFFTDYSLLPLLVHQNYLNSLVGVDK----SIRAERTGDASA-AVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFEVYYE 681 V QV+ LQMW S+ +T+ + ++++KD+ + F+ A + G+AS+ + D RY AFF DY L+PL+V +NY S+ + S+ + A+A A DAD++S ++RG Q W LLP AAL++RV +I GS+G+P FP+WLG S K +RLL+E H+ + +RL Y+ LR ++ RPL E + + ++ YGLSRDD+FE E Sbjct: 534 VRQVIGLLQMWKATSNTITFDDVGRQEASLKKDQTFALTAFDAATFLFGTASKPASFDLRYNAFFVDYDLIPLMVAENYPKSVGAGSRHPPSSLETLKQLSAAADAYCDADIVSQQIRG-AQQWGLLPLSAALHLRVANISGGSIGFPGFPEWLGKNSARGKKKRLLTETAMHMRQKTMMNSQTLRLDYMDALRNSIVRPLHNGAPEDIDATIESMQSYGLSRDDVFETMQE 764
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: A0A7S3ZNL0_9STRA (Replication factor C subunit 1 n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNL0_9STRA) HSP 1 Score: 154 bits (388), Expect = 2.780e-39 Identity = 94/231 (40.69%), Postives = 128/231 (55.41%), Query Frame = 1 Query: 4 VMQVLHALQMW--SRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLVGVDKSIRA-------ERTGDASAAVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFE 669 + Q L+ALQMW S S K TY MKG +S I KD+M R F+ A+MIL R S DR EAFF DY+ +PL+V Q+Y+ + + + + ER +A+ +SD D+I ++R D Q W LLP QA+ V VG+ G P F +W G S K+RR ++++ L +S G EAVR YL L ++ PLL A G + L+ YGLSRDDL E Sbjct: 576 IRQCLNALQMWTQSNASGKATYGDMKGRISAISKDEMQRASTFDAAKMILSDHQRKSHIDRVEAFFHDYTAMPLMVQQSYIQAAMNAKEGGKPLSQLGKLERISEAAERLSDVDLIDRRIRQD-QDWSLLPLQASTTVGVGATVGGFCMNPQFSQWFGKNSTTQKNRRQCADLSYRLGHRVSAGREAVRRDYLGPLLRHVSAPLLGGDASGT---IERLDAYGLSRDDLME 802
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: A0A1V9ZZH8_9STRA (Replication factor C subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZH8_9STRA) HSP 1 Score: 147 bits (372), Expect = 4.400e-37 Identity = 84/226 (37.17%), Postives = 138/226 (61.06%), Query Frame = 1 Query: 4 VMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLVGVDKSIRAERTGD---ASAAVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLR-VALTRPLLERGAEGAEECVSMLEEYGLSRDDLFE 669 + Q+L+ +QMW+R ++MTY + EKD +LR+ PF + I S++S DR EA+F DY L+PL+V +NY+ S+ +K+ E+ D A+ ++++D++S +R + Q W+LL QAALNV +G +G P+F +W+G S NK +RLLSE++ + + SG A+R+ Y+P ++ + LTR L G E +E ++ML+ +S+DDL E Sbjct: 1233 IRQLLNWMQMWNRSKNRMTYDDVVKHFYQSEKDDVLRLNPFSATQQIF--KSKASFDDRNEAYFVDYDLMPLMVQENYIQSIQS-NKATSDEKLEDIMHAADMIAESDLVSLYIRKE-QRWDLLTKQAALNVGACIYAQGFVGRPEFSRWMGKNSSTNKAKRLLSELSIRMRAHASGARNAIRMDYVPFMKEIILTRLLA--GEESIDEVINMLDACEISKDDLTE 1452
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: A0A5D6Y9C6_9STRA (RFC1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y9C6_9STRA) HSP 1 Score: 142 bits (357), Expect = 7.190e-37 Identity = 78/224 (34.82%), Postives = 128/224 (57.14%), Query Frame = 1 Query: 4 VMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLVGVDKSI--RAERTGDASAAVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFE 669 + Q++ +Q W +SK+TY + S KD+ LR+ PF + I +S R EA+F DY +PL+V +NY+ S++ S + E ASA +S++D+++ ++R + Q W+LL QAALNV G +G+P+F +WLG S K +RLLSE++ + + SG E +R+ Y+P ++ L + LL G E E+ + +L+ +SR+DL E Sbjct: 27 IRQLITQMQKWKLTTSKVTYADLVNPASQHNKDESLRLNPFSATQQIF--QRDASFDARNEAYFVDYDFMPLMVQENYIQSIMSNRNSSDEKLEAAMHASAFISESDLVAARVRSE-QRWDLLTKQAALNVGACVYAAGFIGHPEFSRWLGKNSSAGKSKRLLSELSVRMRAHASGSREVIRMDYVPYMKEILLQKLLS-GDEQIEQVIELLDACEISREDLTE 246
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: T0RT30_SAPDV (Replication factor C subunit 1 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RT30_SAPDV) HSP 1 Score: 146 bits (369), Expect = 9.070e-37 Identity = 83/225 (36.89%), Postives = 133/225 (59.11%), Query Frame = 1 Query: 4 VMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLVGVDKSIRAERTGDASAA---VSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFE 669 + Q+L+ +QMW+R + MTY + EKD++LR+ PF +MI S + S R EA+F DY L+PL+V +NY+ S+ ++ E+ D + A ++++D++S +R + Q W+LL QAALNV + G +G P+F +W+G S NK +RLLSE++ + S SG A+R+ Y+P ++ L LL G E +E + ML+ +S+DDL E Sbjct: 472 IRQLLNWMQMWNRSKTVMTYDDVMTHFYQSEKDEVLRLNPFSATQMIFKSGA--SFEARNEAYFVDYDLMPLMVQENYMQSIQS-KRTSSDEKLDDITLAADMIAESDLVSVYIRKE-QRWDLLTKQAALNVGACTYAEGFVGRPEFSRWMGKNSSTNKAKRLLSELSIRMRSHASGARNAIRMDYIPFMKEILLTRLLA-GDESMDEVIDMLDACEISKDDLTE 691 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig11720.1.1 >prot_C-tenellus_contig11720.1.1 ID=prot_C-tenellus_contig11720.1.1|Name=mRNA_C-tenellus_contig11720.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=228bp MVMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGback to top mRNA from alignment at C-tenellus_contig11720:370..4986+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig11720.1.1 ID=mRNA_C-tenellus_contig11720.1.1|Name=mRNA_C-tenellus_contig11720.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4617bp|location=Sequence derived from alignment at C-tenellus_contig11720:370..4986+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig11720:370..4986+ >mRNA_C-tenellus_contig11720.1.1 ID=mRNA_C-tenellus_contig11720.1.1|Name=mRNA_C-tenellus_contig11720.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=684bp|location=Sequence derived from alignment at C-tenellus_contig11720:370..4986+ (Choristocarpus tenellus KU2346)back to top |