mRNA_C-tenellus_contig11720.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11720.1.1
Unique NamemRNA_C-tenellus_contig11720.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: D8LND0_ECTSI (Replication factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 6.640e-107
Identity = 168/227 (74.01%), Postives = 192/227 (84.58%), Query Frame = 1
Query:    4 VMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLVGVDKSIRAERTGDASAAVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFEVYYEW 684
            + QVLHALQMWSRKSSKMTY  +KG +S IEKDK  R+GPF+ AR ILG ASR+ LRDRYE FFTDYSLLPLLVHQNYL+SL+ VD  +R E T  ASAAVSDAD+ISGKMRGDVQHWELLP+QAALNVRVGS+G GSLG+P+FPKWLGNYS+ENK RRLL E++THLN+S+SGG EAVRLSY+  L+  LT+PL E GA GA  CV +LEEYGLSRDDLFEV  E+
Sbjct:  663 IRQVLHALQMWSRKSSKMTYMNLKGGISAIEKDKNQRIGPFDAARSILGGASRTPLRDRYELFFTDYSLLPLLVHQNYLSSLMQVDAKVRTEVTAAASAAVSDADIISGKMRGDVQHWELLPAQAALNVRVGSVGGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNASVSGGTEAVRLSYIHFLKRLLTQPLREEGAAGAPACVDLLEEYGLSRDDLFEVLPEF 889          
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: A0A7S2WPH2_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPH2_9STRA)

HSP 1 Score: 216 bits (550), Expect = 6.220e-65
Identity = 112/223 (50.22%), Postives = 154/223 (69.06%), Query Frame = 1
Query:    4 VMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLVGV-DKSIRAERTGDASAAVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFE 669
            + QVL+ LQMW R SS ++Y  MK  +  +EKD +LR+  F+G R IL    ++ L  R ++FF DYSL+PLLV QNY++S+    +   ++ R   AS A+SD D+I   +R D Q+W LLP QA + VRVG+  RG LG+P FP+WLG  S  NK RRLL ++  HL+S++SGG EAVRL+Y P LR  L  PLL++GAEG +E ++ML+EYG+SR+DLFE
Sbjct:  103 IRQVLNCLQMWRRNSSTVSYMDMKSRIWQVEKDSILRMTAFDGVRSILDPKDQT-LFQRQDSFFLDYSLVPLLVQQNYVDSIQSCHEMGDKSTRMSAASEALSDCDLIDSMLRRD-QNWSLLPFQAVMTVRVGTHTRGGLGFPKFPEWLGKNSTGNKRRRLLGDLAMHLSSAVSGGQEAVRLNYAPVLRRRLVSPLLQKGAEGVQETIAMLDEYGMSREDLFE 323          
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: A0A835YT94_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT94_9STRA)

HSP 1 Score: 185 bits (470), Expect = 3.700e-51
Identity = 109/274 (39.78%), Postives = 146/274 (53.28%), Query Frame = 1
Query:    4 VMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLVGVDKSIRAERTGDASAAVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLN--------------------SSISGGPEAVRLSYL--------------------------------PTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFE 669
            + Q LHA+QMWSR S  M Y  +K  L  + KDK  RV  F+GARMI  + S     +RYEAFFTDY L+PLLV QN+ +++   +K+   +R   A+ A+SDA++    +RGDV HWELLP  AAL++RVG    G +G+P FP+WLG  S   K RRL++E+ TH+N                    S ++   EAV L Y+                                P L   +T PL   GA+G  E ++ML+EYGLSRDDL E
Sbjct:  281 IRQCLHAMQMWSRGSRTMAYMEVKDGLGAVSKDKSQRVSAFDGARMIFQTKSIPQA-ERYEAFFTDYGLVPLLVQQNWPDAIAKSNKATMMQRMARAADAISDAELAGSMVRGDVNHWELLPLYAALHLRVGLECDGYIGFPGFPQWLGKNSAATKRRRLVAEINTHMNARQARTPSPDNDHLPLESLLSLVNAEREAVWLDYVSSSVLSVRLIVIQSEREKRVXXXXXXXXXXXVPVLTRVITEPLRSAGADGVGEAMAMLDEYGLSRDDLLE 553          
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: F0XZ23_AURAN (AAA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ23_AURAN)

HSP 1 Score: 178 bits (452), Expect = 1.470e-48
Identity = 104/235 (44.26%), Postives = 138/235 (58.72%), Query Frame = 1
Query:    4 VMQVLHALQMWSRKSSKM---TYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSL----------VGVDKSIRAERTGDASAAVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFE 669
            + Q L+ALQMW+    +    +YT MK  LSTI KD + RV PF+GA++IL    R S  DR +AFFTDYSL+PLLV  NY+ +             VD+ +   R   A+A +SD D+I  ++  D Q W LL ++A+L VR G +  GS   P F  W G  S   K +R   E+  HL S ISG  +AVR  YLP L   +TRPL++ GA G  E ++ L+EYGLS+DDLFE
Sbjct:  344 IRQCLNALQMWATSEGEAETCSYTAMKDRLSTISKDAIQRVTPFDGAKIILSDVRRKSHFDRCDAFFTDYSLVPLLVQHNYVTAASAARDAQGKPCSVDEKLN--RLEAAAACLSDVDLIDRRVHAD-QEWGLLTTEASLTVRAGVLVDGSCMAPQFSAWFGKNSTTKKSKRQCGELALHLGSRISGTRDAVRRDYLPMLAKYVTRPLVDGGAAGVAETIARLDEYGLSKDDLFE 575          
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: A0A812KXV0_9DINO (Replication factor C subunit 1 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KXV0_9DINO)

HSP 1 Score: 169 bits (427), Expect = 1.400e-44
Identity = 89/236 (37.71%), Postives = 139/236 (58.90%), Query Frame = 1
Query:    4 VMQVLHALQMWSRK----SSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLV---GVDKSIRAERTGDASAAVSDADMISG--KMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFEVYYEW 684
            + Q +H LQMW+        ++T+  MK + +T +KDK LR+  F+  + +      S+  +RY +FF DY L+PLLV Q    S+    G   + +  R  DA+ A++ +D++S   +MRG    W LL S AA+NV+      GS+ +P FP+W G  S   K RRLL E++ HLN  +SGG +++R+ Y+ TL+ A   P+LE+GA+G  + ++ML+ YGLS+ DL E  + W
Sbjct:  523 IRQTVHMLQMWANSPHGADGRLTFAAMKAAEATSQKDKSLRLNGFDVTKTLFSDVRSSTFTERYNSFFVDYDLIPLLVQQAMPQSVQTPRGEAPTSKLARMADAADAIALSDVMSNCVRMRGQ---WSLLTSVAAMNVKAAYHASGSVAFPGFPEWFGKNSTMGKRRRLLGELSMHLNHRVSGGSQSLRMHYMETLKSAFYAPMLEKGADGVPDTIAMLDSYGLSKQDLTESCHAW 755          
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: A0A2R5GMW3_9STRA (Replication factor C subunit 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMW3_9STRA)

HSP 1 Score: 155 bits (392), Expect = 7.830e-40
Identity = 87/232 (37.50%), Postives = 134/232 (57.76%), Query Frame = 1
Query:    4 VMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRD-RYEAFFTDYSLLPLLVHQNYLNSLVGVDK----SIRAERTGDASA-AVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFEVYYE 681
            V QV+  LQMW   S+ +T+  +    ++++KD+   +  F+ A  + G+AS+ +  D RY AFF DY L+PL+V +NY  S+    +    S+   +   A+A A  DAD++S ++RG  Q W LLP  AAL++RV +I  GS+G+P FP+WLG  S   K +RLL+E   H+        + +RL Y+  LR ++ RPL     E  +  +  ++ YGLSRDD+FE   E
Sbjct:  534 VRQVIGLLQMWKATSNTITFDDVGRQEASLKKDQTFALTAFDAATFLFGTASKPASFDLRYNAFFVDYDLIPLMVAENYPKSVGAGSRHPPSSLETLKQLSAAADAYCDADIVSQQIRG-AQQWGLLPLSAALHLRVANISGGSIGFPGFPEWLGKNSARGKKKRLLTETAMHMRQKTMMNSQTLRLDYMDALRNSIVRPLHNGAPEDIDATIESMQSYGLSRDDVFETMQE 764          
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: A0A7S3ZNL0_9STRA (Replication factor C subunit 1 n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNL0_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.780e-39
Identity = 94/231 (40.69%), Postives = 128/231 (55.41%), Query Frame = 1
Query:    4 VMQVLHALQMW--SRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLVGVDKSIRA-------ERTGDASAAVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFE 669
            + Q L+ALQMW  S  S K TY  MKG +S I KD+M R   F+ A+MIL    R S  DR EAFF DY+ +PL+V Q+Y+ + +   +  +        ER  +A+  +SD D+I  ++R D Q W LLP QA+  V VG+   G    P F +W G  S   K+RR  ++++  L   +S G EAVR  YL  L   ++ PLL   A G    +  L+ YGLSRDDL E
Sbjct:  576 IRQCLNALQMWTQSNASGKATYGDMKGRISAISKDEMQRASTFDAAKMILSDHQRKSHIDRVEAFFHDYTAMPLMVQQSYIQAAMNAKEGGKPLSQLGKLERISEAAERLSDVDLIDRRIRQD-QDWSLLPLQASTTVGVGATVGGFCMNPQFSQWFGKNSTTQKNRRQCADLSYRLGHRVSAGREAVRRDYLGPLLRHVSAPLLGGDASGT---IERLDAYGLSRDDLME 802          
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: A0A1V9ZZH8_9STRA (Replication factor C subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZH8_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.400e-37
Identity = 84/226 (37.17%), Postives = 138/226 (61.06%), Query Frame = 1
Query:    4 VMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLVGVDKSIRAERTGD---ASAAVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLR-VALTRPLLERGAEGAEECVSMLEEYGLSRDDLFE 669
            + Q+L+ +QMW+R  ++MTY  +       EKD +LR+ PF   + I    S++S  DR EA+F DY L+PL+V +NY+ S+   +K+   E+  D   A+  ++++D++S  +R + Q W+LL  QAALNV      +G +G P+F +W+G  S  NK +RLLSE++  + +  SG   A+R+ Y+P ++ + LTR L   G E  +E ++ML+   +S+DDL E
Sbjct: 1233 IRQLLNWMQMWNRSKNRMTYDDVVKHFYQSEKDDVLRLNPFSATQQIF--KSKASFDDRNEAYFVDYDLMPLMVQENYIQSIQS-NKATSDEKLEDIMHAADMIAESDLVSLYIRKE-QRWDLLTKQAALNVGACIYAQGFVGRPEFSRWMGKNSSTNKAKRLLSELSIRMRAHASGARNAIRMDYVPFMKEIILTRLLA--GEESIDEVINMLDACEISKDDLTE 1452          
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: A0A5D6Y9C6_9STRA (RFC1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y9C6_9STRA)

HSP 1 Score: 142 bits (357), Expect = 7.190e-37
Identity = 78/224 (34.82%), Postives = 128/224 (57.14%), Query Frame = 1
Query:    4 VMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLVGVDKSI--RAERTGDASAAVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFE 669
            + Q++  +Q W   +SK+TY  +    S   KD+ LR+ PF   + I      +S   R EA+F DY  +PL+V +NY+ S++    S   + E    ASA +S++D+++ ++R + Q W+LL  QAALNV       G +G+P+F +WLG  S   K +RLLSE++  + +  SG  E +R+ Y+P ++  L + LL  G E  E+ + +L+   +SR+DL E
Sbjct:   27 IRQLITQMQKWKLTTSKVTYADLVNPASQHNKDESLRLNPFSATQQIF--QRDASFDARNEAYFVDYDFMPLMVQENYIQSIMSNRNSSDEKLEAAMHASAFISESDLVAARVRSE-QRWDLLTKQAALNVGACVYAAGFIGHPEFSRWLGKNSSAGKSKRLLSELSVRMRAHASGSREVIRMDYVPYMKEILLQKLLS-GDEQIEQVIELLDACEISREDLTE 246          
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Match: T0RT30_SAPDV (Replication factor C subunit 1 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RT30_SAPDV)

HSP 1 Score: 146 bits (369), Expect = 9.070e-37
Identity = 83/225 (36.89%), Postives = 133/225 (59.11%), Query Frame = 1
Query:    4 VMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILGSASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLVGVDKSIRAERTGDASAA---VSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLGNYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERGAEGAEECVSMLEEYGLSRDDLFE 669
            + Q+L+ +QMW+R  + MTY  +       EKD++LR+ PF   +MI  S +  S   R EA+F DY L+PL+V +NY+ S+    ++   E+  D + A   ++++D++S  +R + Q W+LL  QAALNV   +   G +G P+F +W+G  S  NK +RLLSE++  + S  SG   A+R+ Y+P ++  L   LL  G E  +E + ML+   +S+DDL E
Sbjct:  472 IRQLLNWMQMWNRSKTVMTYDDVMTHFYQSEKDEVLRLNPFSATQMIFKSGA--SFEARNEAYFVDYDLMPLMVQENYMQSIQS-KRTSSDEKLDDITLAADMIAESDLVSVYIRKE-QRWDLLTKQAALNVGACTYAEGFVGRPEFSRWMGKNSSTNKAKRLLSELSIRMRSHASGARNAIRMDYIPFMKEILLTRLLA-GDESMDEVIDMLDACEISKDDLTE 691          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11720.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LND0_ECTSI6.640e-10774.01Replication factor C subunit 1 n=2 Tax=Ectocarpus ... [more]
A0A7S2WPH2_9STRA6.220e-6550.22Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A835YT94_9STRA3.700e-5139.78P-loop containing nucleoside triphosphate hydrolas... [more]
F0XZ23_AURAN1.470e-4844.26AAA domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A812KXV0_9DINO1.400e-4437.71Replication factor C subunit 1 n=1 Tax=Symbiodiniu... [more]
A0A2R5GMW3_9STRA7.830e-4037.50Replication factor C subunit 1 n=1 Tax=Hondaea fer... [more]
A0A7S3ZNL0_9STRA2.780e-3940.69Replication factor C subunit 1 n=3 Tax=Pelagomonas... [more]
A0A1V9ZZH8_9STRA4.400e-3737.17Replication factor C subunit n=1 Tax=Thraustotheca... [more]
A0A5D6Y9C6_9STRA7.190e-3734.82RFC1 domain-containing protein n=1 Tax=Pythium bra... [more]
T0RT30_SAPDV9.070e-3736.89Replication factor C subunit 1 n=2 Tax=Saprolegnia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11720contigC-tenellus_contig11720:370..4986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LND0
PFAMsAAA,BRCT,RFC1
Model size684
Max annot lvl2759|Eukaryota
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0022616,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360,GO:1901576
Exons3
Evalue1.09e-107
EggNOG OGsCOG5275@1|root,KOG1968@2759|Eukaryota
Ec32 ortholog descriptionReplication factor C small subunit
Ec32 orthologEc-04_004310.1
DescriptionDNA clamp loader activity
Cds size684
COG categoryE
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.6722398-CDS-C-tenellus_contig11720:369..7071680789191.6722398-CDS-C-tenellus_contig11720:369..707Choristocarpus tenellus KU2346CDSC-tenellus_contig11720 370..707 +
1680789191.6830652-CDS-C-tenellus_contig11720:2923..31191680789191.6830652-CDS-C-tenellus_contig11720:2923..3119Choristocarpus tenellus KU2346CDSC-tenellus_contig11720 2924..3119 +
1680789191.6914263-CDS-C-tenellus_contig11720:4836..49861680789191.6914263-CDS-C-tenellus_contig11720:4836..4986Choristocarpus tenellus KU2346CDSC-tenellus_contig11720 4837..4986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11720.1.1prot_C-tenellus_contig11720.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11720 370..4986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11720.1.1

>prot_C-tenellus_contig11720.1.1 ID=prot_C-tenellus_contig11720.1.1|Name=mRNA_C-tenellus_contig11720.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=228bp
MVMQVLHALQMWSRKSSKMTYTGMKGSLSTIEKDKMLRVGPFEGARMILG
SASRSSLRDRYEAFFTDYSLLPLLVHQNYLNSLVGVDKSIRAERTGDASA
AVSDADMISGKMRGDVQHWELLPSQAALNVRVGSIGRGSLGYPDFPKWLG
NYSKENKHRRLLSEVTTHLNSSISGGPEAVRLSYLPTLRVALTRPLLERG
AEGAEECVSMLEEYGLSRDDLFEVYYEW
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mRNA from alignment at C-tenellus_contig11720:370..4986+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11720.1.1 ID=mRNA_C-tenellus_contig11720.1.1|Name=mRNA_C-tenellus_contig11720.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4617bp|location=Sequence derived from alignment at C-tenellus_contig11720:370..4986+ (Choristocarpus tenellus KU2346)
ATGGTTATGCAGGTGCTGCACGCACTCCAGATGTGGAGTCGCAAGTCCTC TAAGATGACGTACACAGGGATGAAGGGTAGCCTTTCGACGATCGAGAAGG ATAAGATGCTTAGAGTGGGCCCGTTCGAGGGCGCCCGCATGATCCTGGGG TCGGCTTCCCGTAGCAGTCTCCGCGACCGCTACGAGGCGTTCTTCACAGA CTACAGTCTCTTGCCCCTCCTTGTGCATCAGAATTACCTCAACAGTCTTG TGGGCGTGGACAAGAGTATACGTGCTGAGCGGACAGGTGATGCCTCTGCT GCTGTTAGTGATGCTGACATGATCTCAGGAAAGATGAGGTGAGGAGGGAG GTGGGGTGAGTGGGAAAAGACAGAGGTTTAGGTGATGTTGTGACCACTGG TGGTAGTTTGTCGGAGGTGTCTCGGTGTGTACTGGGTGTGGGAAGAAAAT ATATTGTTTTTATAGTATTTAAAAAAGCATCGCCTTTTTGAAGGTGGGGG GGGGGGGGGGGGGGGGTGAGAAATTTGGTTATAAAAATTTATTTTTATTA ATTTATTTTGTTTTGGTGAATAAATGGGGGATTTTNNNNNNNNNNGGGAG CGGAAGAGTGAACGGAGAACAGGTAGGGATTACATAGTGTTTTGCAAATA TATGTATATAGATATATTATGTTTTTATGTGAATATAGTGGTATTTTGTA GTATCTGTTGCAATTGGAAATATTAGAAAGGATGTGTTTTTATGGTGTTG AATCTTGGGACTAGTTATGAAACCCTCATGTAGATGTCATGGGGTGTCAT TGTCATATGTATTGTGTTGAAGTGTATACAGTTGTGCCTATGGACAGTGT AATTTTGCTGGTATTGGATGTTAGTGCTTGTGGTTGTGTGTGTTTTTTAT GGCAGGGTGAATTGTTGGAGGTGTCTCCTGCTTCCACGGGACCTGAAACG GTTGGGGTTAAGATCCCTTGATGTTTTTTGCAGCATGGTTGAAGTTAGAG TCCACTTTTGAAAGTGGACTTCAAACCCTAACTATGTGTGTTGAGAGACT TGTCTATGTTATTGAATGACGTCAAGCACTAACCCTAACATATACTATGA ATATAACTGTATGCACCTATATCGATAACAATACTAGAAAACTCAATTGG TAGTAGTAGTAGTAGTAGTAGCAGCAGCAGCATGGTACCTCTGTGATCAT GTGTCTTGGTGAGTGATATCCTGACTTTACCATTTTATTCTTTGGTTATG ATATAGGGATAGGCCTAGGTATGTTTGTTAAGAGTTGGTGTGGGATTTGA GGGGTGTTGAGGAGAGAACCTTTTTTAAGTAATTTTTTTCTCCTCTTTTT GCTCTATGTAGATGATCAAGTCTTGATAAAGGTTACAAGACCTTTTTTTA GTCTGGACAATCACTAATAACATAGCTGAGGTGGTCCAGGTCATGGCAAC AGACTGGTGCCTGGCTGCGCCAAATCCAAATAGTTGATAGATATGGACTG TGGCCCTGTTAGGGCATATTGGTACCAGATCAGCCCAAGGCGTAGCCATG TTGAAACAGCCCATGGACATGTACTGGTCCTGTTAGAACATATTCGTACT GGGCCAGGTTGAGACCCGGTCAAGCAAGTAGTTCTATAGTATTAATAGCA CAGATAGCATACACTGCTATGGTAGGATAAAGCACCTGTTTTTCTTACCA TCTAAGAAATGAACCCAGTTGACCAGTCATGTTGAAATAGTTGACCGCCA TCTACAGGAAGACATTTGGACCAACCCTATTTGGATATTACTAGTACTGG TCATGTTGTAACAGCTCATGTCCAAGGATCGGTCCTGTTAGAACATTCCA GTAACGGGCTGGCCCGATGCTTGTCTGCAATGAAATAGTTGACAGCAGTA AGATAAATAATAAGATGTTTAACCAGACCGACTAGGTCAATGTGAGTTGG ACCAGTGTGGCAAAAATATGTCCTACTTTGCCCCAAATACGTAAGGGAAT AAATGTATCCCCTTAGCCAGTCTAATCTGTGCTGTTTTTATCATATTGAT TGGGATGGGATCATACAGGCTTTGTGCCATCTGTGTTTTACATTGGCCTG CAGTTCCATCTGGTTGCAGTGTCGAATGGCCCTGCTCCGGACATTTCAGA AAACATTGTATTATATGGTTGGTGGAGTCTTACCGTTCTGCCAACACAGG AAAAATTATGTTTGGTATATATACCCTGTGATACGTAGGTATGGTTACAA CTTGTTTTCATACAGAGTATGATATTGAGTTGCAGTATGCCCGTGGAATT GGCGTGGTGTGAGAACCAACGGGAAATAGGAGTTGTCGAGAGGATACATG AGTTTCTATTCACTCAGTCCAACATGCAGGCCGTGAGTTATTGGTGGAAA TGTTGCTCTTTCTTTCTTTACCGCCTCCCCTCCCCCTCCCCCTCCCCCCT TACTATTACCAAAATAGGTTTATCATTTTTTTATTAAGCTCTTCCTCTTG GTCCTTCTTGTCTGCTTTTTTTTAAATGTAAAACAACAAATAAAAAAAAT GAAGGGGAGATGTCCAGCACTGGGAGCTCCTGCCGTCTCAGGCAGCTCTG AATGTACGTGTAGGATCCATTGGGCGTGGCAGCCTGGGCTATCCAGATTT TCCCAAGTGGCTAGGGAACTATAGTAAGGAGAACAAGCACAGGCGGTTGT TGAGCGAGGTCACAACACATCTCAATTCTAGCATCAGCGGGGGGCCGGAG GTAAGGAAGTGGTGTTGTACAAGTAGCTTTACCTTGTGAAGGCATGTGAA CTTAGACTTGATGATTTGGATTATTTTGTTTTTTGTGAGGAACGGAAAAA GGGTTTGGTAGTTTCCTGCGTAGGATGGTAATTGTGGTGCGTTTTTCTTC TTCTGGACTGAGGTCAAGTGGATACTGATTAGTGCTGTGAATTGATTTTT TTTTGTGAGCATGGTTTGATTTGACTTGGGTTCTTTTGTGTTTGTTTTTT TGTTGATTAGTGATCTAAGTGAAGTACTGACTGCGGCATATGCATAAGAA ATCGACCGATCGAATCAATCGAATCTAACTCAACGTAGGTTATCGTTGAT TTGATTAAAAAAAATATGGTCACAATTCAAAGCACTAGAAATTACAGAGA CCTTGCTATATATTCTGGTCCGGTGACTGGACAAGATGGCCCTCTTGATT GTCCATGTGTACATTTTTTTGTTTTTTTATGTTGATGTTTTTCTTTTTCT TTTCTGTGTGCTATTCTTGACTGTGCACTCAGGCTAGTTATGTGGAGATG ATAATGATTACAAAAAATTGAAAAGAAGAAGGGTTTTACCTGTGGGATGC ATTGCTTTGTTTCTTTGAGAGGTGGGATGTGAAGTGGGTAATATAATTCA TGTTTATGTTCCATATGTACATACAGTTGTGCTCACTTAGGAATACTATT GTGTCTGTGTGTATGTGATGTAGTGGCAAAACTTCCTAAGGTGTTGAATT CCCCTACTAATATTATTAGGGAAGCATTCAGTCAGGAGTCCCTGCTCATT TGATGCTTTGTAGGCGTGGTGCCTGTGAGAAAATGTGTTGCCTATCAGGA TAAATGTAAATTTTATCAAAAAAGAGAAGTTAGTTCGTTCCATCTCACCG GTGCTTTCAAGATTAAGAATATTATTAAGAATATTAAGAATATTATTCCT GATGCAGTGAGATGGTTAGTTGTGTCTTTCCTTGGCGTTGATTGTCTACT GTTCAATATGAACGAAAGTAGTTTTTTCTCCACGAGGGTAAGAGCTTCTG TTGATAGCTTCTGTTGATGCGTTTGTGTTGGTGACTTGAAAGTGGTACCT ACCCCCATATTGTCGTAGAAGAAATTTCCTGCATTGTTCTTGTTGGCTTT TGTTGTACCAAAAATGTACCGATGAAGTCCCGTGAATCCTTTGCAGAGGG GTTGGTGATAGTGCAATGCCAAATGCTCCAGGCTCTTCTTATAACATTGA CCTGATCCTTGTAGTCAGGTACCGTAGTGGTTTGGTGCTTGTAATGAGGC GTACTGTTTTGAAGTTGTTTTGATAAGTAAGAGTGAATGTCATAGAGTTT GTTTTTTTCTATCCGTTTTTAGTACATACTTTGATATAGTGTCATTGAGT GTGGAAAAATACTTTTTTTTGTCACATCTATAATTTTTTTTCCTTCTCTT CTTGCAGTGGTACATAGTACAGGGTAAATCCAAATGTTAAACGCTGAGAT AGACATTGAGATACCGTCATTCTACCGGGGAAGATATATAGTTGCACAAA AGCACCAACTTTTACAAATGAAATTAAATATTAAATCAAACAATCTTTGC TAGGGCAACATGTTGTCATCATTGTTGTTGCTAAATTTCCCTCCTGTGTT TGTTTTTAGTTCCACCCTACCATCAATGAGTAGCCCTAACCAACTGAACC TTCTGCACTGAGCACAGGCAGTCCGACTATCGTACCTTCCAACCCTTCGA GTAGCCCTGACAAGACCGTTGTTGGAGAGAGGTGCAGAAGGTGCTGAAGA GTGTGTGTCCATGCTGGAGGAATATGGACTCTCCAGGGATGACCTCTTTG AGGTATACTACGAATGG
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Coding sequence (CDS) from alignment at C-tenellus_contig11720:370..4986+

>mRNA_C-tenellus_contig11720.1.1 ID=mRNA_C-tenellus_contig11720.1.1|Name=mRNA_C-tenellus_contig11720.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=684bp|location=Sequence derived from alignment at C-tenellus_contig11720:370..4986+ (Choristocarpus tenellus KU2346)
ATGGTTATGCAGGTGCTGCACGCACTCCAGATGTGGAGTCGCAAGTCCTC
TAAGATGACGTACACAGGGATGAAGGGTAGCCTTTCGACGATCGAGAAGG
ATAAGATGCTTAGAGTGGGCCCGTTCGAGGGCGCCCGCATGATCCTGGGG
TCGGCTTCCCGTAGCAGTCTCCGCGACCGCTACGAGGCGTTCTTCACAGA
CTACAGTCTCTTGCCCCTCCTTGTGCATCAGAATTACCTCAACAGTCTTG
TGGGCGTGGACAAGAGTATACGTGCTGAGCGGACAGGTGATGCCTCTGCT
GCTGTTAGTGATGCTGACATGATCTCAGGAAAGATGAGGGGAGATGTCCA
GCACTGGGAGCTCCTGCCGTCTCAGGCAGCTCTGAATGTACGTGTAGGAT
CCATTGGGCGTGGCAGCCTGGGCTATCCAGATTTTCCCAAGTGGCTAGGG
AACTATAGTAAGGAGAACAAGCACAGGCGGTTGTTGAGCGAGGTCACAAC
ACATCTCAATTCTAGCATCAGCGGGGGGCCGGAGGCAGTCCGACTATCGT
ACCTTCCAACCCTTCGAGTAGCCCTGACAAGACCGTTGTTGGAGAGAGGT
GCAGAAGGTGCTGAAGAGTGTGTGTCCATGCTGGAGGAATATGGACTCTC
CAGGGATGACCTCTTTGAGGTATACTACGAATGG
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