mRNA_C-tenellus_contig11713.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11713.1.1
Unique NamemRNA_C-tenellus_contig11713.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11713.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11713contigC-tenellus_contig11713:25..2653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size397
Hectar predicted targeting categoryother localisation
Exons2
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.4407096-UTR-C-tenellus_contig11713:24..381680789191.4407096-UTR-C-tenellus_contig11713:24..38Choristocarpus tenellus KU2346UTRC-tenellus_contig11713 25..38 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.4498715-CDS-C-tenellus_contig11713:38..601680789191.4498715-CDS-C-tenellus_contig11713:38..60Choristocarpus tenellus KU2346CDSC-tenellus_contig11713 39..60 +
1680789191.46081-CDS-C-tenellus_contig11713:2294..26531680789191.46081-CDS-C-tenellus_contig11713:2294..2653Choristocarpus tenellus KU2346CDSC-tenellus_contig11713 2295..2653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11713.1.1prot_C-tenellus_contig11713.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11713 39..2653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11713.1.1

>prot_C-tenellus_contig11713.1.1 ID=prot_C-tenellus_contig11713.1.1|Name=mRNA_C-tenellus_contig11713.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=127bp
MVPLQGEGDCGGQEDQCIEAVPGSQIPGNALHATCDSSHASPRASQGCSG
RVTGNSGGDGEGRRRSGPGGCGGQAAELLLVAAESSLGIGDGKGSAKAGS
QNGKGGKRPGARRASGGVGGGRGGVRY
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mRNA from alignment at C-tenellus_contig11713:25..2653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11713.1.1 ID=mRNA_C-tenellus_contig11713.1.1|Name=mRNA_C-tenellus_contig11713.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2629bp|location=Sequence derived from alignment at C-tenellus_contig11713:25..2653+ (Choristocarpus tenellus KU2346)
CAAGACGCAAGGTGATGGTGCCATTACAGGGTGAGGGTAAGTTTGACAGG
AATGAATTGGGGTGGAGGGGGTAAGAGGCATTCATTGTAGAAGAAATATT
TTGTTGTTGTACTATGCTGTATGTAATTTTACAGTAGGGGGCTTTTGACA
TTTTGTATGGAGTGAAAGTATCTTAGAGGGTACGAATTTTGCCCTGTTTG
TCCATTTGGGACTTGGCTTCCCACAGGTGTTTTATGAAATTTTCCTACTC
CGATATGTTTCGGAGTAGGTAAAATTTGCATGTTATGAAAAGGTATGTCC
GGAACAAGGATATTGACACTTCCTCAAAAACATGATAGTCAAAATTACAT
CAAAATCGGAACATTGGAATTTGACCCCGAAATGGATGCGGCTCTACCCT
CTAAGATACTTTGGCTCATGTTGTTTGATCGATAAATGCCACCAAGATAA
ACATAGATCGATGTACAGTACTTTTTCTACTGTTGTGGGTTCTATACTTG
AGTAGTTTATGATTATAGGTTAAATCAGCCCAAAATATTCTCATGTACTC
AATTTTAATTCGCCCAGATTGAGGCACCTGAAATGCAGGGTGTTGCAGGG
CTCTGCAAGCAGAGTGCATGGTTCTATGACTCAGAGCACTCGTTTTTACT
CTGCCGAATGTTACAAACAGTGCATCATCCCTATCCATCTAGACTTGGTT
TACAGTTCTTTTCTTTTCAAGGTTGGCTTTTGTCGCTGTCAAAACTCCTT
GTTGTTGAGTAAATATTGTGCAATTTTTTTTTTCTGGAGTTTTGCATGGT
TGGGTGGTTTGGATGGAAGGGTTTCCTTGCCAATGTGTGTTTAGAGCATC
CTGTGTTTATCCTAGAAATGGAACAGGAGTGTGAGGTACCTTTGAGGGCC
AGGTTTAGGGTCAGGGAGGGAGGGAAGATACTGTCCATGGTGTAATATTA
TGATTTTACTGTTGTACTAACCTGCCGGTGAATGATCTTCTTATGCAAAC
AATCACTGGAAAAAAATAGTAGGGTCTATATTTTCCCAGCAGGTTGTTAC
CAACCCCCTCTGTGATTTCCATCACTAGAGTGAAGTATCCCAAGAATAAT
TTGCCACTGGTGGTGATATACTCTTGCCAGCATTTCTTTTTAAATCTGCT
GTGCACTGTACCACACTTCTACTGCTTCAACGAAGATGAGGAAGAGTTGA
CTTTTTTGGGGGGGGAGGAGAGGGTGGGGATAGGAGGGAATGTCAAATGT
TTTTAGATACCATTATATCACAGGGGAAAAGGGTTGTATCATGCAATTAT
TTGCCCGGTAGGTACAGCTGTGGTATCTCAAGATTTGACCTAACAAAATC
AGAGGTTGTGGTGTCAAGTTCCAGCTGGACCCATTCCCAACTCCCTACCG
TGGAAGGATAAAGAAAGTGAGAGGGGGTCCAGTTAATGGGCTCAATAGAA
AATGTGAAGAGTAATGTGAGATGTCAGGGAGTTTGTGCAATTGGTGGGGC
TAATGGTCCATGGATCATGATGGGTAGGACCCTAGCCTCTGATATTTTTG
GATGTTGAGATGCCACTGTTGTGGTACCAGGGCAGATATTGAAGCAAACT
TCTACCCAGGTGGTACAGAGGTATTTCAACATTTAACTGTGTAGTACCCA
AAATGTAGCAATAGTTTCAAGGCCAAATAAGAGATTGCCGCCAACGAGGT
ATTGGAGGATTGGCGGATCAGTATGATGTTAGAAGGTATGCCACCAGTAT
GTTACATAAGATACCGATGATAGTATATATATTCATTATGCCTTACCGTC
ATTGTTTTATTTCAAAGTTAGTCATACCATTCGTTCAGTAGCCGGGAAGC
TTATATTTAGTTTATTATACCCTGTTTGACAGAAAAGGAACAGCTGGTAC
AGCATCCTTGTTCAGCGTTTGGGGTTCTTGGGGATTTGTCAGTGCTTTTG
ATGTTGACTTGCATAATGACCAATGATATGTTGGATGGACAGGACGGGGA
TGGGGGGTGTCGAAGGTTGTGTGAGACAAATTTAGTTGGTTTTGGTTTTA
TACGGAGCAGACGACAAGGTCGGCATGTTTCAGAAGGATTAAGTACCTCA
GGTTCAACTTCTTGTCAATGCAGAAAACCTCCCTGTACAGCCCTCCTTAC
TCCTTTGTCACACCAATGCGGACCTGATCTCCATTGGTGTATTTTTTTGT
TGCCCTACAATAAGACCTCTCTTCACCAGTCTCACATCTCTATCCCCACT
CATTTGATGGATGTGTTTAGGAGATTGTGGGGGTCAGGAGGACCAGTGCA
TTGAGGCAGTTCCAGGATCTCAGATCCCAGGGAATGCCTTGCATGCAACC
TGCGACAGCTCTCACGCTAGCCCCAGAGCATCACAGGGCTGCTCAGGAAG
GGTTACAGGTAACAGTGGTGGTGATGGTGAGGGCCGACGACGGTCAGGAC
CAGGAGGCTGTGGAGGGCAAGCTGCAGAGTTGTTACTAGTTGCAGCAGAA
TCGTCTCTGGGAATTGGAGATGGGAAGGGCTCTGCAAAGGCTGGATCTCA
GAATGGAAAGGGAGGGAAACGGCCAGGTGCCAGAAGGGCTTCTGGTGGTG
TTGGGGGGGGGAGGGGAGGAGTAAGGTAT
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Coding sequence (CDS) from alignment at C-tenellus_contig11713:25..2653+

>mRNA_C-tenellus_contig11713.1.1 ID=mRNA_C-tenellus_contig11713.1.1|Name=mRNA_C-tenellus_contig11713.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=381bp|location=Sequence derived from alignment at C-tenellus_contig11713:25..2653+ (Choristocarpus tenellus KU2346)
ATGGTGCCATTACAGGGTGAGGGAGATTGTGGGGGTCAGGAGGACCAGTG
CATTGAGGCAGTTCCAGGATCTCAGATCCCAGGGAATGCCTTGCATGCAA
CCTGCGACAGCTCTCACGCTAGCCCCAGAGCATCACAGGGCTGCTCAGGA
AGGGTTACAGGTAACAGTGGTGGTGATGGTGAGGGCCGACGACGGTCAGG
ACCAGGAGGCTGTGGAGGGCAAGCTGCAGAGTTGTTACTAGTTGCAGCAG
AATCGTCTCTGGGAATTGGAGATGGGAAGGGCTCTGCAAAGGCTGGATCT
CAGAATGGAAAGGGAGGGAAACGGCCAGGTGCCAGAAGGGCTTCTGGTGG
TGTTGGGGGGGGGAGGGGAGGAGTAAGGTAT
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