mRNA_C-tenellus_contig11710.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11710.2.1
Unique NamemRNA_C-tenellus_contig11710.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11710.2.1 vs. uniprot
Match: A0A835YJP1_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJP1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.200e-15
Identity = 72/116 (62.07%), Postives = 84/116 (72.41%), Query Frame = 2 
Query:  326 LCAAAYDGNLKEVKALVEGRGIKADVTDPYQGSTALHWACFGGQLEVAKWLVKKAGSSVNYKNKENRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKECGHTPLHRACVAGQARG 673
            L AAAY G L++VK LV   G   D  D ++GSTALHWAC GG+LEVA+WLV++AG+    +N++ RXXXXXXXXXXXXXXXXXXXXXXXXX        G TPLHR C AG  RG
Sbjct:    8 LIAAAYKGRLEDVKRLVSKEGCDCDKPDSFKGSTALHWACRGGKLEVAQWLVEEAGADPAARNQDGRXXXXXXXXXXXXXXXXXXXXXXXXXVNSKDDIDGQTPLHRLCSAGLVRG 123
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BLAST of mRNA_C-tenellus_contig11710.2.1 vs. uniprot
Match: D7FSZ7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ7_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 1.100e-5
Identity = 23/43 (53.49%), Postives = 27/43 (62.79%), Query Frame = 2 
Query:  386 GIKADVTDPYQGSTALHWACFGGQLEVAKWLVKKAGSSVNYKN 514
            G  AD  D  +GST LHWA FGG L+V +WLVK AG+     N
Sbjct:    5 GSPADAPDLLRGSTPLHWASFGGHLDVVRWLVKTAGADAQAAN 47
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11710.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YJP1_9STRA5.200e-1562.07Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
D7FSZ7_ECTSI1.100e-553.49Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11710contigC-tenellus_contig11710:995..2664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSZ7
PFAMsAnk,Ank_5
Model size1017
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.71e-07
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Descriptionprotein ubiquitination
Cds size480
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.296734-UTR-C-tenellus_contig11710:994..12421680789191.296734-UTR-C-tenellus_contig11710:994..1242Choristocarpus tenellus KU2346UTRC-tenellus_contig11710 995..1242 -
1680789191.345434-UTR-C-tenellus_contig11710:2375..26641680789191.345434-UTR-C-tenellus_contig11710:2375..2664Choristocarpus tenellus KU2346UTRC-tenellus_contig11710 2376..2664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.3053946-CDS-C-tenellus_contig11710:1242..14941680789191.3053946-CDS-C-tenellus_contig11710:1242..1494Choristocarpus tenellus KU2346CDSC-tenellus_contig11710 1243..1494 -
1680789191.3138478-CDS-C-tenellus_contig11710:1935..20341680789191.3138478-CDS-C-tenellus_contig11710:1935..2034Choristocarpus tenellus KU2346CDSC-tenellus_contig11710 1936..2034 -
1680789191.3273523-CDS-C-tenellus_contig11710:2246..23751680789191.3273523-CDS-C-tenellus_contig11710:2246..2375Choristocarpus tenellus KU2346CDSC-tenellus_contig11710 2247..2375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11710.2.1prot_C-tenellus_contig11710.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11710 1243..2375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11710.2.1

>prot_C-tenellus_contig11710.2.1 ID=prot_C-tenellus_contig11710.2.1|Name=mRNA_C-tenellus_contig11710.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=160bp
MSSELANGGAMALCAAAYDGNLKEVKALVEGRGIKADVTDPYQGSTALHW
ACFGGQLEVAKWLVKKAGSSVNYKNKENRTALLFACERCHLKVAQFLVKE
GHAEVNEADKECGHTPLHRACVAGQARGEVRTRQGGRLAAVVHYSRFVHG
CHFVVGMDC*
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mRNA from alignment at C-tenellus_contig11710:995..2664-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11710.2.1 ID=mRNA_C-tenellus_contig11710.2.1|Name=mRNA_C-tenellus_contig11710.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1670bp|location=Sequence derived from alignment at C-tenellus_contig11710:995..2664- (Choristocarpus tenellus KU2346)
GTGTGTCGGTGACTCTTGAATGGGATTGAGTGTGGTCCAGTTGCGTTGGG
CCGGTGATCTCGTTGAAAGACGAGGTAGCTAAGCTTTACGCACCAGAGGA
GAAATACCCTTTGGTTGAAGACCGCTCTCTACGTTACTTCGCTCATTCTA
TATCTTATTTTCTCCACCACGTGACGAGGTGTCTTGTTGGTGTGTCAATT
TGGAACGAGGTGACCAGCAACGTAGAACGGACAGGGCTTGCACTTGTCTA
AAGGAGTATTCCGGACTGTGTAAATCCTCCGTCTCGAGTATGTCTTCCGA
GTTAGCTAATGGCGGTGCAATGGCGCTGTGTGCTGCGGCCTACGACGGCA
ACCTGAAGGAGGTTAAAGCCCTTGTCGAAGGACGGGGTATCAAAGCGGAT
GTCACTGATCCGTATCAGGTGTGACGATCGCCAGACCCTTCACAGAGATA
TAAATGTGCCGGTTCGATCGATTTATGAGGTTCCTCCCTGTTAATATCCA
CCAAGAAAGTCAAGACTATGCCCGATGAACTTCCCCCAGCGCACATCCTA
TTTCGATTTGCGAGAGCACTATATTTGAAATGTAATATCGATTATGCTTC
ATTCTCCTCCTGATGGTGTGTTGAGCATAGGGTTCGACGGCGTTGCATTG
GGCATGCTTTGGAGGTCAGTTGGAGGTGGCGAAGTGGCTGGTGAAAAAGG
CTGGCTCATCTGTAAATTACAAAAACAAGGTAAGCTGTCTCGAGTCACAA
ATTATGGAGGATGAGTGATTGCAGGACTTGATAGTGGTTGCATTGTGATG
GGGTGTTGATGAGAATCCATAAATGGCTTTGCTGACTGGACGAGTGAGAG
CAACATCTGCCCGAACCATGCGTCAGGGTACCTTCGCAATAAATGTTACA
TGCTCTAACTATGGCCCTTCTACAATGGACCTGACCCGGCTCTTTATTCT
AGTTAAAATAATTTTGGCGAATTATTCCTACTCTTTCTTACACATTTTTG
GCTGGAATGGCATCAAGGAACGACCTTAGCGTCATTTTTCTAGTGTCAGA
TGGTGTCGAGTTGGATGGGTGTTGAGTAAGATCAAAATGCCTAAGTGCTG
CACAATGGCGCCTTTTGCAAGCAATAATGTCGGTGTCCACTGCTCGCCTC
TCCTCGGAATTTCCTTTCAGGAGAACCGTACAGCGTTGCTATTTGCATGT
GAGCGCTGCCACTTGAAGGTGGCTCAGTTTCTGGTGAAGGAGGGGCATGC
TGAGGTAAATGAGGCGGACAAAGAGTGCGGGCACACACCCCTTCACAGGG
CTTGCGTGGCTGGCCAGGCGAGGGGGGAGGTAAGAACAAGGCAAGGAGGA
AGGCTGGCGGCAGTGGTACACTACAGTAGGTTCGTTCATGGTTGTCATTT
TGTCGTTGGGATGGATTGTTAAGTTCTAATGTATGTTGGAGCTTCGAAAC
AATAGATTTTTCTTTTTCAGTGAGATTGAATACAGTGGAATGAGTATCAA
GCTTGTTGGAGGCTACAACTGATATACCATTAATCATTTTTGTAGAAGAG
TGTGTGTGTGTGTCTGATGATGATGAAGATGAATAGGTAGGAGGAGATTG
GTGTTGTACAAGGAGATTTAGAAAATTTACAGTCCTACTTCAGAGAGCAC
TGTCAGAGGAGAGTGGAAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig11710:995..2664-

>mRNA_C-tenellus_contig11710.2.1 ID=mRNA_C-tenellus_contig11710.2.1|Name=mRNA_C-tenellus_contig11710.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=480bp|location=Sequence derived from alignment at C-tenellus_contig11710:995..2664- (Choristocarpus tenellus KU2346)
ATGTCTTCCGAGTTAGCTAATGGCGGTGCAATGGCGCTGTGTGCTGCGGC
CTACGACGGCAACCTGAAGGAGGTTAAAGCCCTTGTCGAAGGACGGGGTA
TCAAAGCGGATGTCACTGATCCGTATCAGGGTTCGACGGCGTTGCATTGG
GCATGCTTTGGAGGTCAGTTGGAGGTGGCGAAGTGGCTGGTGAAAAAGGC
TGGCTCATCTGTAAATTACAAAAACAAGGAGAACCGTACAGCGTTGCTAT
TTGCATGTGAGCGCTGCCACTTGAAGGTGGCTCAGTTTCTGGTGAAGGAG
GGGCATGCTGAGGTAAATGAGGCGGACAAAGAGTGCGGGCACACACCCCT
TCACAGGGCTTGCGTGGCTGGCCAGGCGAGGGGGGAGGTAAGAACAAGGC
AAGGAGGAAGGCTGGCGGCAGTGGTACACTACAGTAGGTTCGTTCATGGT
TGTCATTTTGTCGTTGGGATGGATTGTTAA
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