mRNA_C-tenellus_contig1171.2.3 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1171.2.3
Unique NamemRNA_C-tenellus_contig1171.2.3
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1171.2.3 vs. uniprot
Match: A0A6H5JA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA60_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.490e-16
Identity = 56/168 (33.33%), Postives = 91/168 (54.17%), Query Frame = 2 
Query:   32 LRFGDGLVLLNSTQLARVAEAVEVDDIDPSRLVTKVEKEVTSLRKFFAVLHAKLPSLSVQPCAWNMLFNRSPNMVQAMDIHCP-----FSITSTSYAGWHIRTSDGETSKSFDPNVHRYTYMEAPETVVFSYSRSMSYAAKEL-----HINS-SLPVYLSTNSQEMKK 502
            L+F DG ++L+S QL  +A    + D   + +   V++  +SLR+    + A    +  + CAWNML  RSP+M+ +++ H P     F      Y  WH+RTSDGE+  SF+P+VH Y       T V     S + AA+++     H ++  +PVY+S+NS+ M +
Sbjct:  291 LKFSDGNLVLSSQQLEALAIQTGIPDTSLAEMAVAVKERWSSLRRLSQAI-AGSAVVPPETCAWNMLLRRSPSMIASLEAHNPWTPSGFGPRPKDYVAWHVRTSDGESEHSFNPDVHTYILHGQSSTTVVPIFLSATDAAEKMCPKMFHEDAPKMPVYISSNSKSMAR 457
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BLAST of mRNA_C-tenellus_contig1171.2.3 vs. uniprot
Match: A0A6H5KDJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 7.560e-10
Identity = 55/190 (28.95%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:   20 ERHVLRFGDGLVLLNSTQLARVAEAVEVDDIDPSRLVTKVEKEVTSL-RKFFAVLHAKLPSLSVQPCAWNMLFNRSPNMVQAMDIHCPFSITSTS------YAGWHIRTSDGETSKSFDPNVHRYTYMEAPETVVFSYSRSMSYAAKEL----HINSSLPVYLSTNSQEMKK----VSMKQLWNVSFIDL 544
            +RH L+F DG ++++  QL  ++ +  V     S +     K   +  R + A  +  L      PCAWNM+  RSP M+ +M+ H P+     S      Y  WHIRTS+GET +SF     RY +       +     S   A++E        +  PVY+S+NS+   +     + K+    +F+DL
Sbjct:   49 DRHALQFLDGFLIVSDHQLEVMSASFGVGSGTHSGIKAGFRKAFKNRWRHYLATANLDL----APPCAWNMVLRRSPTMMNSMEAHTPWVTAGDSPRAHAHYHAWHIRTSEGETERSFSKQ--RYIFNNVASQSICPMFVSTREASEEACPSRFSGNDSPVYISSNSKSTARNCSAEARKKDIETAFVDL 232
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BLAST of mRNA_C-tenellus_contig1171.2.3 vs. uniprot
Match: D7G5J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J4_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.620e-7
Identity = 43/118 (36.44%), Postives = 61/118 (51.69%), Query Frame = 2 
Query:  161 RKFFAVLHAKLPSLSVQPCAWNMLFNRSPNMVQAMDIHCPFSITSTS------YAGWHIRTSDGETSKSFDPNVHRYTYME-APETV--VFSYSRSMSYAAKELHINSS-LPVYLSTN 484
            R +FA+ +  L      PCAWNM+  RSP M+ +M+ H P+     S      Y  WHIRTS+GET +SF     RY +   A E++  +F  +R  S  A     +    PVY+S+N
Sbjct:   28 RHYFAMANLDL----APPCAWNMVLRRSPTMMNSMEAHTPWVTVGDSPRTRAHYHAWHIRTSEGETERSFSKQ--RYIFNNVASESICPMFVSTREASEEACPSRFSGKDSPVYISSN 139
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1171.2.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JA60_9PHAE8.490e-1633.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ4_9PHAE7.560e-1028.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5J4_ECTSI1.620e-736.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1171contigC-tenellus_contig1171:9926..14276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3230
Hectar predicted targeting categoryother localisation
Exons3
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.21604-UTR-C-tenellus_contig1171:9925..125241680789191.21604-UTR-C-tenellus_contig1171:9925..12524Choristocarpus tenellus KU2346UTRC-tenellus_contig1171 9926..12524 -
1680789191.2674909-UTR-C-tenellus_contig1171:14050..142761680789191.2674909-UTR-C-tenellus_contig1171:14050..14276Choristocarpus tenellus KU2346UTRC-tenellus_contig1171 14051..14276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.227026-CDS-C-tenellus_contig1171:12524..126691680789191.227026-CDS-C-tenellus_contig1171:12524..12669Choristocarpus tenellus KU2346CDSC-tenellus_contig1171 12525..12669 -
1680789191.2414556-CDS-C-tenellus_contig1171:13327..135701680789191.2414556-CDS-C-tenellus_contig1171:13327..13570Choristocarpus tenellus KU2346CDSC-tenellus_contig1171 13328..13570 -
1680789191.2583003-CDS-C-tenellus_contig1171:14033..140501680789191.2583003-CDS-C-tenellus_contig1171:14033..14050Choristocarpus tenellus KU2346CDSC-tenellus_contig1171 14034..14050 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1171.2.3prot_C-tenellus_contig1171.2.3Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1171 12525..14050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1171.2.3

>prot_C-tenellus_contig1171.2.3 ID=prot_C-tenellus_contig1171.2.3|Name=mRNA_C-tenellus_contig1171.2.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=135bp
MLFNRSPNMVQAMDIHCPFSITSTSYAGWHIRTSDGETSKSFDPNVHRYT
YMEAPETVVFSYSRSMSYAAKELHINSSLPVYLSTNSQEMKKVSMKQLWN
VSFIDLQWLLKTFIQHIPETRVRQVLMPSWTFFS*
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mRNA from alignment at C-tenellus_contig1171:9926..14276-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1171.2.3 ID=mRNA_C-tenellus_contig1171.2.3|Name=mRNA_C-tenellus_contig1171.2.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4351bp|location=Sequence derived from alignment at C-tenellus_contig1171:9926..14276- (Choristocarpus tenellus KU2346)
AGGTGAAGGAGAACAGGGTGAACGGCATGTCTTGCGGTTTGGTGATGGTC
TGGTACTCCTCAATTCAACACAGCTTGCTAGAGTGGCAGAGGCAGTAGAA
GTCGATGACATTGATCCATCACGTCTAGTTACTAAGGTGGAAAAGGAGGT
CACATCCTTACGGAAATTCTTTGCTGTGCTCCATGCAAAACTTCCTTCAC
TCTCAGTACAGCCGTGTGCATGGAACATGCTTTTTAACCGCAGGTGCATA
TCTAACAATTCTATTACCCTCAATGCCATGCGGCATCTTGAGGGAGTTTT
CTCACCATATTCTAATAGGCAACGTACACCATACTATATACACTCGGAGA
TTTGAAACAAAATGTAAAGGCTTGGAGTGTTTACATTTGACTCGAAGAAT
CTTGGAGGGGGTGGCGGCTGTCCATTCGGGGCCTATTTTTCCATGTCACG
ATTATTGGGTGATTTCGTTGCATTTATTGGATGGATAATGTAAGTGTAGT
TCTCCTGTGTAGGGCCTGTGAATGGACACCCGGGTGTAGACCTCCTCTCC
TCCCCCCAAATATACGTTGAACCTTTGAAGACCAAGAAAACAAACATGCT
CTCGCATGCGCACATTCTGAGGGGAGGGAGTTGATCTACTGACATTACGG
ACTCAATTGTCTTGTTTGGTACCCTGCATACTTGCTTGAAACCATCCTCC
CACTAGTCCCAACATGGTGCAGGCAATGGACATTCATTGTCCCTTTTCCA
TTACTTCCACTTCCTATGCTGGGTGGCATATAAGAACATCTGATGGGGAA
ACCTCCAAGTCATTCGATCCAAATGTGCATAGGTACACTTATATGGAGGC
ACCTGAGACGGTTGTGTTTTCCTACTCTAGAAGTATGTCATACGCCGCCA
AGGAGCTCCATATCAACTCGAGCCTGCCCGTCTATTTATCTACTAACAGG
CAAGCTATTCTGGTACTGGTGTGATTTCAACAATTCAGCCCAACAATTCA
GCCCACAGTTGAACTTGAGTCTTTCCCTTTGTGAGGCTGGTTTGCTCTTC
CAGTTTGGCGCTGGGAAATTTACCATTTGTATAATAAATAATATGCTTAA
GGTATTTGCTTGTTGGCATTTTATGTGAGGAGGAATCGTTGAGACTTGTT
AGATGGTTCAACCATCAACATGAAATCCTTAGCTGATTAATAGTAGAGTC
ATGAGACATGTCACCATGTTCTAGATTTTTCAGCGTTTTTCGGGTTTGGG
AGCAGAGATAATTGGGCATTTGCACGGAGTCATTTTGATTGCCACGTGTA
CCGTTGGAATGGATTCGAATGAAGAGCTGAAACCTGGCAATTGCTGTGTA
GATGCCTGTATATTGTTTGAAATAACCTGGTAGTAAACAATTTGGTCTAC
AAGGACCCTCCAGACATCCTATGGTGTGATCTCACCCATTACGTTTCAAT
TTAATAATAGGTACCACTGTGCTTTGTCCCATTTTCATTGTATGGATGAT
ACGCTTTCTCAAGAAGTATGATTTCTATACCAAGTAACTTCTGTAGAGAA
GTTTCAACACACCTTGCACCAACCCTACATTTCACTTCTTTCTCCTCTCT
CCTGCAGTCAAGAAATGAAGAAAGTCAGCATGAAGCAGTTGTGGAATGTG
TCATTCATCGATCTTCAATGGCTCCTCAAGACTTTCATACAACATATACC
AGAGACAAGAGTAAGGCAGGTCTTAATGCCTTCCTGGACTTTTTTTTCCT
GATGGACTTGACATTAATGCTGCGCTGTGGATCGTCTTTCTCGGGCATGA
TCGCAATTATCAAAAAGTTTTTCTTGCTCTGTGATAGCACCAGATGTTGT
CGGGTCTGAAATGAGATCTAGGATGATTTTCCTGTACAGTCCTCGATTGG
AGAATAGAACATGAAATATATGTTGAATGAATGTTTCCTTGGAATGTACC
ACAGCAAATAGATTTTGAAAAGTGAAGAGTGCCCTTACATGTTGTGAAGT
ACTATTACTTTACTATTCTTTTGTTGGTGTGAGCAGAAGATAAGTCCCAC
CCCTACCACCTTTTCCTGCCCCGAAGAAAAAAAATGCCATAGAAACTCAT
TATTTATGTGAAGAAATCATGAGTTTATGTCCCCTTCCCTGTACTTGCTC
GACGTCAAATGTGGCATATGGGAACCCCTTTCATAACAAGCACTGGTACT
TCAAGAACTCATGTTTACTCATTATATATGGTGCTCCTTGATCTCTGCAA
TACAGCCACAAGTGCAGGTGACACAACTTCATGACCTGCCCAGTGTGCTA
TGCTCCTCTCCCCCAATTTTGTAGTGCATTATAGTTGACTTACTGAATTT
GCTGTTGACATTACAACGTACAACTTGTCTAACTGCTAGAGCAATGCATC
AATTCTGGATGTGTCACCTGTAATCCTCGACCCATTTTTCCTGGCTATAA
ATGACACGTCCTCCTTTTTTGTCCAGGTTTGTTGTAGGGTTTGGGGCGTA
CACCATTAAATTAGTATCAAGAACAAATGGTTGCGGTGACATTATAGGCA
CACATATACACAAGAGAATCGCTGGGCAAAGCAAACAACCATTATTGAGC
AACTTAATGGATGAATTCCATGCAAAGAATACTAACATATGGGTTGATAT
GTTACAGGCGAATAGCGCGAATAGTATACATACGTAAGAAATCATGTAAG
AGGAACTTTGAATTGATAGAAGATGCAGAGTAAGATTTGAAATGCATACT
TAATCTTACAGAATAGATGTCAATTCCTGAAAGTTGCAGAATAAAGATTT
ATGATTTGGAGTATTTTCACAGCAGTTTGCAGACTTCATTTTAACTCTTT
AGCTGTAGAAAAACGATGAAAGATGTTAATAAAAGGCTGAGTCTTGACCA
CATGCGTAGTTCTTTGATCCTTACCCTCTTTTGATAAAGCGAAAAGCGAG
ACATCGACTGAGCTAAGCATCAACTGACACTATACATGGTCATCATCTGT
GAACCCCTGCATAGCGTCGTTTCAAGGTCGTTGGATTTGAGTTGCATATC
CCGTGGTGGTGAGTTCTAGTGGGGCATGCTGTAACAGATACCCACACACC
GCATAATTGTTTCCTTTCACAAGATCTCAACTTTTATTGTGGTCCTAGAA
AACAACTCAAGTCGAATCGTGGTTCAATATTCAATAAGGACAAGGAAAGT
CGCCTTATCTGTTATGGATACCAATATTTTAATGCGAGGGAATATCCCAG
GTTGTGTACCTAAAGCCGTGTAAAAGTTATGACTAACCCTTTTGATAGGA
CCCTTTATTCAAAGGGTGCCTATTGCCCAGTACCCATCCCATTACTACTT
TGAATCCTCCACATGTTACTCTTTCACAGCGTACCCTCCTATGTATCATC
ATACGATGAGCCCTCACTATTCGATTTCATCACAAATGACTTTGGGAACA
ACGCAGTCAGTCTCATCATTTCTGTACACCCTCATTTTGTGCCACTTTCA
TTACACAACTGCATCCATCTTCAATTCTTCTCTACGAGGTTGGCATCACG
AAAAGCATCGACCAGACAAGGGGAATAGTGAACACCATGTGAAGGCAGAA
CTACTGGGTGGGCCATGGATACTGACTGGCAGTCTCACAATCCTCATGAA
CGAGTTGTCCTTCCACAACTTCCAGGGCGACTTCCAGAACATAGTATGAC
ATGCTATGGGAACAAGTACTACCTCCAATAACTGCCCGGATAGAGAAAAT
ATTTACTTGACGTATAAATATTTTGCAAGTTACAAATTCCATAAAATAGA
ACACACCGTACCTTTTCTTGCTCAGCTGCGTCACCAGGGATCAGTGAAAT
TAATTGGGTCGTTTTTGTTCAGTTGCCGATAAAATAACAGAAATCCTATG
TATCTGACAAGTACTACTCCAATCTCTTTTTACATTACAGCATTTATGTG
CCTCACATATACATGGCATTGGTTTCTAGAAGAGTGCATCATTATTGTAC
CCAGTAACTGGTGGGGTTGTGTATCAACCTCATGTTTATCATTTATTGGT
GTTGATGCCCTTCTTGTCGCTACTACAGCGCCTTCCCGTGCGATATTAGG
TGTTCGTACAATCAGGACTTCTATTTTTTGTTTTTTACCAGGACAGAACT
CTACTGGCTTGGCAGAATAAATGTCAAGAGTTGAAGTATCTTAGAGGGTA
CAAATTTGCCTTGTTTATCCAAAATGTTTCGGAGTGGGTAAAATGTATAC
ATTATGAATTAGTGTGTCCAGGACATAGATACTGACACTTCCTAACAAAC
AGGATAAATAGGCAAAATTCCATCAAAATCGCAACATTGGATTTTGGCCC
C
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Coding sequence (CDS) from alignment at C-tenellus_contig1171:9926..14276-

>mRNA_C-tenellus_contig1171.2.3 ID=mRNA_C-tenellus_contig1171.2.3|Name=mRNA_C-tenellus_contig1171.2.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=405bp|location=Sequence derived from alignment at C-tenellus_contig1171:9926..14276- (Choristocarpus tenellus KU2346)
ATGCTTTTTAACCGCAGTCCCAACATGGTGCAGGCAATGGACATTCATTG
TCCCTTTTCCATTACTTCCACTTCCTATGCTGGGTGGCATATAAGAACAT
CTGATGGGGAAACCTCCAAGTCATTCGATCCAAATGTGCATAGGTACACT
TATATGGAGGCACCTGAGACGGTTGTGTTTTCCTACTCTAGAAGTATGTC
ATACGCCGCCAAGGAGCTCCATATCAACTCGAGCCTGCCCGTCTATTTAT
CTACTAACAGTCAAGAAATGAAGAAAGTCAGCATGAAGCAGTTGTGGAAT
GTGTCATTCATCGATCTTCAATGGCTCCTCAAGACTTTCATACAACATAT
ACCAGAGACAAGAGTAAGGCAGGTCTTAATGCCTTCCTGGACTTTTTTTT
CCTGA
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