mRNA_C-tenellus_contig11709.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11709.1.1
Unique NamemRNA_C-tenellus_contig11709.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11709.1.1 vs. uniprot
Match: A0A6H5KIX7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIX7_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.330e-27
Identity = 87/189 (46.03%), Postives = 99/189 (52.38%), Query Frame = 2 
Query:  509 RAPVPAVEPRSMVEYGSGFLRKSCDSCVSSKRRCDGQTPCTRCLRRKKTCHYTERKKCGPRSGAKNPKPNLQRPLVIP---------------------------------HTSRPPLKKMRLSPA-----------PLYPE---LSSGELSGDTTG-PEPDTSD--APSERFLDRSGSGSSWYSLDDQ 925
            R P PA++  S V+YGSGFLRKSCDSCVSSKRRCDGQ PCTRCLRRKK CHYTERKKCGPRSG K      ++P                                     H +   L +   S A           PL P    L++GELSG+TT   + D SD   P  R L R  SGSSW+SLDDQ
Sbjct:   29 RVPKPAMDADSFVDYGSGFLRKSCDSCVSSKRRCDGQDPCTRCLRRKKPCHYTERKKCGPRSGQKTGNGTRRQPAGTSPPDCAGSSGADARKQRRQFMEYQQRALRTQQQQHAAVGGLARAPASSASSRYPAVAHSRPLAPHASVLTTGELSGETTCVDQTDCSDNGLPPHRVLSRDESGSSWWSLDDQ 217
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BLAST of mRNA_C-tenellus_contig11709.1.1 vs. uniprot
Match: A0A6H5K1B7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B7_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 8.740e-6
Identity = 25/51 (49.02%), Postives = 38/51 (74.51%), Query Frame = 2 
Query:  560 GFLRKSCDSCVSSKRRCDGQTPCTRCLRRKKTCHYTERKKCGPRSGAKNPK 712
            G LRKSCD+C SSK +C G  PC RC +R+  C +++R++CGP++ A++ K
Sbjct:   21 GPLRKSCDTCTSSKTKCQGSIPCDRCKKRRIECKFSKRRRCGPKARAEDEK 71
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11709.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIX7_9PHAE3.330e-2746.03Zn(2)-C6 fungal-type domain-containing protein n=2... [more]
A0A6H5K1B7_9PHAE8.740e-649.02Zn(2)-C6 fungal-type domain-containing protein (Fr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11709contigC-tenellus_contig11709:2126..4220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog40483.S8E6T1
PFAMsFungal_trans,Zn_clus
Model size1860
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000165
EggNOG OGs2BV0U@1|root,2S24A@2759|Eukaryota,3A5J1@33154|Opisthokonta,3P3XE@4751|Fungi,3V16J@5204|Basidiomycota,228A4@155619|Agaricomycetes,3H2Y5@355688|Agaricomycetes incertae sedis
DescriptionFungal specific transcription factor domain
Cds size1083
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.1464226-UTR-C-tenellus_contig11709:2125..27871680789191.1464226-UTR-C-tenellus_contig11709:2125..2787Choristocarpus tenellus KU2346UTRC-tenellus_contig11709 2126..2787 -
1680789191.18601-UTR-C-tenellus_contig11709:4105..42201680789191.18601-UTR-C-tenellus_contig11709:4105..4220Choristocarpus tenellus KU2346UTRC-tenellus_contig11709 4106..4220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.156379-CDS-C-tenellus_contig11709:2787..34001680789191.156379-CDS-C-tenellus_contig11709:2787..3400Choristocarpus tenellus KU2346CDSC-tenellus_contig11709 2788..3400 -
1680789191.167036-CDS-C-tenellus_contig11709:3635..41051680789191.167036-CDS-C-tenellus_contig11709:3635..4105Choristocarpus tenellus KU2346CDSC-tenellus_contig11709 3636..4105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11709.1.1prot_C-tenellus_contig11709.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11709 2788..4105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11709.1.1

>prot_C-tenellus_contig11709.1.1 ID=prot_C-tenellus_contig11709.1.1|Name=mRNA_C-tenellus_contig11709.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=361bp
MGDHQGRRDHALAWGDEDARSSLVPELPGIRGLVLRTPGPNFEMPLGLPP
PPPLRLAPYPSSAMPPFSFGSTSLSPHHHTVSGSGFHLRPLCGIPTACGI
PSESLPAFADVEAGLRRGSGTHSVLPSSTSVRAPVPAVEPRSMVEYGSGF
LRKSCDSCVSSKRRCDGQTPCTRCLRRKKTCHYTERKKCGPRSGAKNPKP
NLQRPLVIPHTSRPPLKKMRLSPAPLYPELSSGELSGDTTGPEPDTSDAP
SERFLDRSGSGSSWYSLDDQPPPPSPTQQDTKDTVEAATLEMAEGACGGD
TSESVPTSTGCSEGPKEKVVQAPGAAEAEVAALLIGLGKIQGSHEWDRGG
SPAATERRSA*
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mRNA from alignment at C-tenellus_contig11709:2126..4220-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11709.1.1 ID=mRNA_C-tenellus_contig11709.1.1|Name=mRNA_C-tenellus_contig11709.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2095bp|location=Sequence derived from alignment at C-tenellus_contig11709:2126..4220- (Choristocarpus tenellus KU2346)
ATCAATCCCTACTTCAGTGTCATTTGAAGCCTCTACTGCACTTGTCATCT
AGACTAAGAACGGGAAACCTTCCGCATACAGGAAATACTCTCTTTGGTCA
ACCTCCGCTATCTGGATGGGCGATCACCAGGGAAGGAGGGATCATGCGTT
GGCATGGGGGGATGAAGATGCGCGGAGCTCTTTGGTGCCAGAGTTACCGG
GCATTCGAGGTCTCGTCCTCCGTACCCCTGGTCCAAACTTCGAAATGCCT
CTTGGTCTCCCTCCGCCCCCACCTTTGAGACTGGCACCATATCCGTCATC
AGCCATGCCACCATTCTCCTTTGGATCAACTTCGTTATCTCCTCACCACC
ATACAGTCTCTGGCTCTGGATTCCATCTAAGGCCACTATGTGGGATCCCT
ACAGCTTGTGGTATACCATCCGAGTCTTTGCCTGCCTTTGCTGATGTCGA
GGCTGGACTCCGACGAGGATCAGGGACGCATTCGGTTTTACCCTCAAGCA
CTTCGGTTAGAGCTCCCGTTCCAGCGGTAGAACCCAGGAGTATGGTTGAG
TACGGAAGTGGCTTCCTGCGGAAGTCTTGCGATAGGTGAGATAAATTTGC
TTACGTTTAGAGTGCACTCGTCGCTGGTTGAACATTGAAGTGGGTGCGCT
TAGAAACAGGATTAACCTCGTTTGGTTTCTTTCGTTGTTTCAGGTGGTTG
GTCCTTCTTGTATTTCTGATCGAAAATCTTTCCAGAGAATCCATTGCATG
CGTTTTTGTTGTAACCTTACAATTCCTCCCCCACTGGGCCTCCATCCGCC
ATTTGTACCCTGAGGAACAGTTGTGTCAGCAGTAAGCGCCGTTGCGATGG
TCAAACACCGTGTACTCGTTGCCTACGACGCAAGAAAACCTGTCACTACA
CGGAGCGGAAGAAGTGTGGGCCTCGGAGTGGCGCGAAGAACCCCAAACCC
AACCTTCAACGCCCTTTAGTAATCCCTCATACTAGTCGCCCACCCCTCAA
GAAGATGCGCTTATCGCCAGCGCCTCTTTATCCAGAGCTATCGTCTGGTG
AACTGAGCGGAGATACTACAGGTCCCGAACCAGATACCTCCGATGCCCCA
TCTGAACGGTTCCTGGACCGAAGTGGTTCGGGAAGTAGCTGGTACTCCCT
TGACGACCAGCCACCACCTCCGTCACCGACGCAACAAGACACGAAGGACA
CAGTGGAGGCTGCTACTCTTGAGATGGCTGAAGGAGCCTGTGGGGGTGAC
ACCTCAGAGTCAGTGCCGACGAGCACGGGATGTTCTGAAGGTCCTAAGGA
GAAAGTGGTCCAGGCTCCAGGCGCTGCAGAGGCGGAAGTAGCGGCACTCT
TGATTGGGTTGGGAAAAATTCAGGGCTCTCATGAGTGGGACAGGGGTGGG
TCACCGGCAGCAACGGAGCGTAGATCTGCGTAGCACGGTAAAGTAGTTCC
TAGAAGTCTCAATGTGTTTGAACCAGTTGAATAAACGTCGACTTGAGAAC
CGGAATTGGATGGCCTGTTCTTGCGTGAGTGTCACTTCTTTATCTCTATT
TATTTATTGTCCATTGTTGTGACAAATACTATGCACTATAGCATGTTTTT
TGTGTGTTCCCTCTATTAGCCCATTATCCATTATTGGTGACTTAAGTCAT
TTGTGTTTTGTTAAGTAGACACCTATTCGTTGATTGGCCCTTTTTTGTCA
AAAGCTCGAGGTGTTTAGCAAGAAGTTTAATGCCTTGCTGTACCCAGCCA
CTCCCCCCTCCCCCTACTTGGAAGTATTTAGGTAAGCACTCGCAGTTATA
AATGGTTTGATGAACAAATATTGGGGATAGAAGGAATAACCTCTAGAAGA
AGTTGCAGACCCTGATGTGCATTATTTTTTTTATTCCTTCCTAGAGACTC
CCTCAACTCCTTTTATTGGCGGCGTGCTTACATATGCGCAAGCAAGCCTT
TCTTGTTGCATTCTGATAGTAATATACAGCCTTGGAACCAGTGTTGTTCC
TGCTACTGTGGCTAGCATGTAAAATTGGATTCCTCTATTGTTGTGCAATA
TGTATAGAGGTTTATTAGCAGTAATTGTCTGCTGGAAGGAAGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig11709:2126..4220-

>mRNA_C-tenellus_contig11709.1.1 ID=mRNA_C-tenellus_contig11709.1.1|Name=mRNA_C-tenellus_contig11709.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1083bp|location=Sequence derived from alignment at C-tenellus_contig11709:2126..4220- (Choristocarpus tenellus KU2346)
ATGGGCGATCACCAGGGAAGGAGGGATCATGCGTTGGCATGGGGGGATGA
AGATGCGCGGAGCTCTTTGGTGCCAGAGTTACCGGGCATTCGAGGTCTCG
TCCTCCGTACCCCTGGTCCAAACTTCGAAATGCCTCTTGGTCTCCCTCCG
CCCCCACCTTTGAGACTGGCACCATATCCGTCATCAGCCATGCCACCATT
CTCCTTTGGATCAACTTCGTTATCTCCTCACCACCATACAGTCTCTGGCT
CTGGATTCCATCTAAGGCCACTATGTGGGATCCCTACAGCTTGTGGTATA
CCATCCGAGTCTTTGCCTGCCTTTGCTGATGTCGAGGCTGGACTCCGACG
AGGATCAGGGACGCATTCGGTTTTACCCTCAAGCACTTCGGTTAGAGCTC
CCGTTCCAGCGGTAGAACCCAGGAGTATGGTTGAGTACGGAAGTGGCTTC
CTGCGGAAGTCTTGCGATAGTTGTGTCAGCAGTAAGCGCCGTTGCGATGG
TCAAACACCGTGTACTCGTTGCCTACGACGCAAGAAAACCTGTCACTACA
CGGAGCGGAAGAAGTGTGGGCCTCGGAGTGGCGCGAAGAACCCCAAACCC
AACCTTCAACGCCCTTTAGTAATCCCTCATACTAGTCGCCCACCCCTCAA
GAAGATGCGCTTATCGCCAGCGCCTCTTTATCCAGAGCTATCGTCTGGTG
AACTGAGCGGAGATACTACAGGTCCCGAACCAGATACCTCCGATGCCCCA
TCTGAACGGTTCCTGGACCGAAGTGGTTCGGGAAGTAGCTGGTACTCCCT
TGACGACCAGCCACCACCTCCGTCACCGACGCAACAAGACACGAAGGACA
CAGTGGAGGCTGCTACTCTTGAGATGGCTGAAGGAGCCTGTGGGGGTGAC
ACCTCAGAGTCAGTGCCGACGAGCACGGGATGTTCTGAAGGTCCTAAGGA
GAAAGTGGTCCAGGCTCCAGGCGCTGCAGAGGCGGAAGTAGCGGCACTCT
TGATTGGGTTGGGAAAAATTCAGGGCTCTCATGAGTGGGACAGGGGTGGG
TCACCGGCAGCAACGGAGCGTAGATCTGCGTAG
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