mRNA_C-tenellus_contig11707.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11707.1.1
Unique NamemRNA_C-tenellus_contig11707.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11707.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11707contigC-tenellus_contig11707:2644..3297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size280
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.1130307-CDS-C-tenellus_contig11707:2643..27841680789191.1130307-CDS-C-tenellus_contig11707:2643..2784Choristocarpus tenellus KU2346CDSC-tenellus_contig11707 2644..2784 -
1680789191.122905-CDS-C-tenellus_contig11707:3159..32971680789191.122905-CDS-C-tenellus_contig11707:3159..3297Choristocarpus tenellus KU2346CDSC-tenellus_contig11707 3160..3297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11707.1.1prot_C-tenellus_contig11707.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11707 2644..3297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11707.1.1

>prot_C-tenellus_contig11707.1.1 ID=prot_C-tenellus_contig11707.1.1|Name=mRNA_C-tenellus_contig11707.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=93bp
MDCQTGRIRAKGVLSAAFLMWKKNKTAMEGGTRAFAVLDAILHLRLNDTR
DRYSCPKCSITHMGECAYAEIVVDERHKNRLCINCPMAQEGSE
back to top

mRNA from alignment at C-tenellus_contig11707:2644..3297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11707.1.1 ID=mRNA_C-tenellus_contig11707.1.1|Name=mRNA_C-tenellus_contig11707.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=654bp|location=Sequence derived from alignment at C-tenellus_contig11707:2644..3297- (Choristocarpus tenellus KU2346)
ATGGACTGCCAGACAGGGAGGATACGGGCGAAGGGGGTTCTGTCGGCAGC
GTTCCTGATGTGGAAGAAGAACAAAACGGCCATGGAGGGTGGAACGCGGG
CGTTTGCTGTACTGGATGCAATCCTCCACCTACGTCTCGGTGAGTAATGT
AGTTGTAACGGTGCACACGGGGATAGCGGGTAATTAATGGCGTAAGATTG
GTTTCCATCCAATCCCCCGAACGGCTAACTAGGTTGTCTCTTTTCAGCGG
TGCACGCCATTAAACTGGTGGAACTTGCGGGGTTCCTCTGTGTGTGGCGC
TGCAGACGCTACCCACACGTCTCTTTATTTGCCACAGTCCGATTGTGTGT
TAATGCATATACATCACCGACTGTTGTATCCCACCTGTACTACTTCGTAC
TGTTTTGCGCCACCAATTTCGTGGTACTTCGTAAACGTGTTCCCCGCGTT
GCGTTGTTGCGCCCAATTAATGATTTCGAAAAATACTAACCTGCCTCTTT
AACGCTCTCCTTCAATGACACGCGCGACAGGTATTCATGCCCAAAGTGCT
CCATCACGCATATGGGCGAATGTGCCTACGCGGAGATTGTAGTCGACGAG
AGGCACAAGAATCGATTATGTATCAATTGCCCTATGGCACAGGAGGGCAG
CGAA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11707:2644..3297-

>mRNA_C-tenellus_contig11707.1.1 ID=mRNA_C-tenellus_contig11707.1.1|Name=mRNA_C-tenellus_contig11707.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=279bp|location=Sequence derived from alignment at C-tenellus_contig11707:2644..3297- (Choristocarpus tenellus KU2346)
ATGGACTGCCAGACAGGGAGGATACGGGCGAAGGGGGTTCTGTCGGCAGC
GTTCCTGATGTGGAAGAAGAACAAAACGGCCATGGAGGGTGGAACGCGGG
CGTTTGCTGTACTGGATGCAATCCTCCACCTACGTCTCAATGACACGCGC
GACAGGTATTCATGCCCAAAGTGCTCCATCACGCATATGGGCGAATGTGC
CTACGCGGAGATTGTAGTCGACGAGAGGCACAAGAATCGATTATGTATCA
ATTGCCCTATGGCACAGGAGGGCAGCGAA
back to top