mRNA_C-tenellus_contig11706.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11706.1.1
Unique NamemRNA_C-tenellus_contig11706.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig11706.1.1 vs. uniprot
Match: A0A6H5KUS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS3_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.670e-11
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   22 RDSVSLFDTNTWEALLEFAVDTLDLASLQFSPDGYTLCLQDTSLE 156
            RD + L+DT +WE+L EF  +T+DL  + FSPDG+TLCLQDTSLE
Sbjct:  170 RDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLE 214
[Close]
BLAST of mRNA_C-tenellus_contig11706.1.1 vs. uniprot
Match: D8LDM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM7_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 4.230e-11
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   22 RDSVSLFDTNTWEALLEFAVDTLDLASLQFSPDGYTLCLQDTSLE 156
            RD + L+DT +WE+L EF  +T+DL  + FSPDG+TLCLQDTSL+
Sbjct:  162 RDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLD 206
[Close]
BLAST of mRNA_C-tenellus_contig11706.1.1 vs. uniprot
Match: A0A068UA00_COFCA (Uncharacterized protein n=3 Tax=Coffea TaxID=13442 RepID=A0A068UA00_COFCA)

HSP 1 Score: 51.2 bits (121), Expect = 4.540e-6
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   22 RDSVSLFDTNTWEALLEFAVDTLDLASLQFSPDGYTLCLQDTSLE 156
            +D V+L   +TWE +  FAVDTLDLA +Q+SPD   + + D+SLE
Sbjct:  156 KDYVNLLSCHTWEIISVFAVDTLDLADIQWSPDDSAIVIWDSSLE 200
[Close]
BLAST of mRNA_C-tenellus_contig11706.1.1 vs. uniprot
Match: UPI001FB0C1C7 (WD repeat-containing protein WRAP73 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0C1C7)

HSP 1 Score: 50.4 bits (119), Expect = 8.490e-6
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   22 RDSVSLFDTNTWEALLEFAVDTLDLASLQFSPDGYTLCLQDTSLE 156
            +D V+L   +TWE +  FAVDTLDLA +Q+SPD   + + D+SLE
Sbjct:  156 KDYVNLISCHTWEIMGVFAVDTLDLADIQWSPDDSAIVIWDSSLE 200
[Close]
BLAST of mRNA_C-tenellus_contig11706.1.1 vs. uniprot
Match: UPI000A2A84FD (WD repeat-containing protein WRAP73 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A84FD)

HSP 1 Score: 49.3 bits (116), Expect = 2.170e-5
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   22 RDSVSLFDTNTWEALLEFAVDTLDLASLQFSPDGYTLCLQDT 147
            +D VS+F  ++W+ L  F V+T DLASL +SPDG  LC+ D+
Sbjct:  157 KDFVSIFTCDSWQLLKHFEVETKDLASLSWSPDGRVLCIWDS 198
[Close]
BLAST of mRNA_C-tenellus_contig11706.1.1 vs. uniprot
Match: D8R9P9_SELML (ANAPC4_WD40 domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R9P9_SELML)

HSP 1 Score: 49.3 bits (116), Expect = 2.170e-5
Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   22 RDSVSLFDTNTWEALLEFAVDTLDLASLQFSPDGYTLCLQDTSLE 156
            +D V L  +N+WE +  FAVDT+DLA L++SP+  T+ + D+SLE
Sbjct:  156 KDYVHLLASNSWEGMGTFAVDTVDLADLEWSPNDNTIAVWDSSLE 200
[Close]
BLAST of mRNA_C-tenellus_contig11706.1.1 vs. uniprot
Match: A0A7R9SXU5_9CHLO (Hypothetical protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7R9SXU5_9CHLO)

HSP 1 Score: 48.5 bits (114), Expect = 3.940e-5
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   22 RDSVSLFDTNTWEALLEFAVDTLDLASLQFSPDGYTLCLQDTSLE 156
            +D V++F   TWE +  FAV T+DLASL +SPDG  + + D +L+
Sbjct:    7 KDYVTVFSVATWEPIKHFAVSTVDLASLHWSPDGSAIAICDHALD 51
[Close]
BLAST of mRNA_C-tenellus_contig11706.1.1 vs. uniprot
Match: UPI000C1D6181 (WD repeat-containing protein WRAP73 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D6181)

HSP 1 Score: 48.5 bits (114), Expect = 4.070e-5
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   22 RDSVSLFDTNTWEALLEFAVDTLDLASLQFSPDGYTLCLQDTSLE 156
            +D V+L   +TWE +  FAVDTLDLA +Q+SPD   + + D+ LE
Sbjct:  156 KDYVNLLSCHTWEIMGVFAVDTLDLADIQWSPDDSAIVIWDSPLE 200
[Close]
BLAST of mRNA_C-tenellus_contig11706.1.1 vs. uniprot
Match: UPI00125D9E3C (WD repeat-containing protein WRAP73 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125D9E3C)

HSP 1 Score: 48.5 bits (114), Expect = 4.070e-5
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   22 RDSVSLFDTNTWEALLEFAVDTLDLASLQFSPDGYTLCLQDTSLE 156
            +D V+L   +TWE +  FAVDTLDLA +Q+SPD   + + D+ LE
Sbjct:  156 KDYVNLLSCHTWEIMGVFAVDTLDLADIQWSPDDSAIVIWDSPLE 200
[Close]
BLAST of mRNA_C-tenellus_contig11706.1.1 vs. uniprot
Match: A0A830HYM9_9CHLO (ANAPC4_WD40 domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HYM9_9CHLO)

HSP 1 Score: 48.5 bits (114), Expect = 4.080e-5
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   22 RDSVSLFDTNTWEALLEFAVDTLDLASLQFSPDGYTLCLQDTSLE 156
            +D V++F   TWE +  FAV T+DLASL +SPDG  + + D +L+
Sbjct:  195 KDYVTVFSVATWEPIKHFAVSTVDLASLHWSPDGSAIAICDHALD 239
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11706.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KUS3_9PHAE1.670e-1162.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDM7_ECTSI4.230e-1160.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A068UA00_COFCA4.540e-651.11Uncharacterized protein n=3 Tax=Coffea TaxID=13442... [more]
UPI001FB0C1C78.490e-651.11WD repeat-containing protein WRAP73 n=1 Tax=Impati... [more]
UPI000A2A84FD2.170e-550.00WD repeat-containing protein WRAP73 n=1 Tax=Exaipt... [more]
D8R9P9_SELML2.170e-548.89ANAPC4_WD40 domain-containing protein n=2 Tax=Sela... [more]
A0A7R9SXU5_9CHLO3.940e-546.67Hypothetical protein n=1 Tax=Pycnococcus provasoli... [more]
UPI000C1D61814.070e-548.89WD repeat-containing protein WRAP73 n=1 Tax=Olea e... [more]
UPI00125D9E3C4.070e-548.89WD repeat-containing protein WRAP73 n=2 Tax=Ipomoe... [more]
A0A830HYM9_9CHLO4.080e-546.67ANAPC4_WD40 domain-containing protein n=1 Tax=Pycn... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11706contigC-tenellus_contig11706:394..552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LDM7
PFAMsANAPC4_WD40,WD40
Model size159
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.93e-12
EggNOG OGsKOG4497@1|root,KOG4497@2759|Eukaryota
Descriptionpositive regulation of non-motile cilium assembly
Cds size159
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.0673456-CDS-C-tenellus_contig11706:393..5521680789191.0673456-CDS-C-tenellus_contig11706:393..552Choristocarpus tenellus KU2346CDSC-tenellus_contig11706 394..552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11706.1.1prot_C-tenellus_contig11706.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11706 394..552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11706.1.1

>prot_C-tenellus_contig11706.1.1 ID=prot_C-tenellus_contig11706.1.1|Name=mRNA_C-tenellus_contig11706.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=53bp
MLSVFLNRDSVSLFDTNTWEALLEFAVDTLDLASLQFSPDGYTLCLQDTS
LE*
back to top

mRNA from alignment at C-tenellus_contig11706:394..552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11706.1.1 ID=mRNA_C-tenellus_contig11706.1.1|Name=mRNA_C-tenellus_contig11706.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=159bp|location=Sequence derived from alignment at C-tenellus_contig11706:394..552+ (Choristocarpus tenellus KU2346)
ATGTTATCGGTCTTTTTAAACAGGGACTCTGTAAGTCTGTTCGACACCAA
CACTTGGGAGGCATTATTGGAATTTGCAGTGGACACGCTTGACCTCGCCT
CCCTTCAGTTTTCGCCGGATGGATACACCCTGTGCCTGCAGGACACCTCT
CTAGAGTGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11706:394..552+

>mRNA_C-tenellus_contig11706.1.1 ID=mRNA_C-tenellus_contig11706.1.1|Name=mRNA_C-tenellus_contig11706.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=159bp|location=Sequence derived from alignment at C-tenellus_contig11706:394..552+ (Choristocarpus tenellus KU2346)
ATGTTATCGGTCTTTTTAAACAGGGACTCTGTAAGTCTGTTCGACACCAA
CACTTGGGAGGCATTATTGGAATTTGCAGTGGACACGCTTGACCTCGCCT
CCCTTCAGTTTTCGCCGGATGGATACACCCTGTGCCTGCAGGACACCTCT
CTAGAGTGA
back to top