mRNA_C-tenellus_contig1170.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1170.1.1
Unique NamemRNA_C-tenellus_contig1170.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1170.1.1 vs. uniprot
Match: A0A6H5KT61_9PHAE (Hira domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT61_9PHAE)

HSP 1 Score: 305 bits (782), Expect = 1.090e-86
Identity = 236/520 (45.38%), Postives = 293/520 (56.35%), Query Frame = 1
Query:   37 AGLGLENERGGRIGKSG-VLECSPLPQEFRSLPARRYTRVTMFRGGKVVWSNFLAGIATSCCGNSRVGAVGVEDGSIYIYDRSGTLVAPALVISPPVAYLECSGDVQDPTTSISSKYPQNRRGVVGDQLMAISGEGEVFVWDLDAMSLTVKGSLGPLMRSLSLGSSLASQSPTSTTAGKGRDQGETAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVVRAGVTSEGSPLVLMSCPGGVGGGLQVFLLHKGLGTWVRVADGRYSLSNFYGSGPCTVHAT--GLVSGLQGIVRSSARPSPSALLQASALPATHLSSSAMRGITGEGGLQVSVTRTHLEDSMACALMLGSSEEFVDILQAYAGCLAKTCVGANDARVRALCDKLLVGCRPEGDQSVLAVTVGGSEGGANGGAL------------EL-GARFGSGPTVLGVSKFKLLKEVVLPALGANRSLQRLVHEYSNELSLIN-------PPHCLSQSSAPLEVRSKSVPGNAVNGVTNGVGGGAV 1527
            +G G+E  RGGR      V+ECS L ++F  LP+RRYT VT+ RGG+  W +++AG+AT+CCGN RV AVG EDGS+Y+YDR+G   AP +VISPPVAYLEC     D                 G+ LMAISG+G+V VW+LD+M + VK SL PL RSL+                 G      A    XXXXXXXXXXXXXXXXXXXXXXX    VSV RAGVT EG PLV+++C G  GG LQ F  H GL TWVRVADGR +LS+FY SGPCT  +T  G++S LQ  VRS A PSP A+LQAS   A    ++AM G      L                       EF D+L+AYAG LAK+  G  + RVR LCDKL++        + + V  G + GG  G               EL G R  +GP++LG+ K  LL +VVLPAL  NRSLQRLV EY + L  ++       PP       +PLE R+   P  A+  +  G   G+V
Sbjct:  660 SGAGVEGNRGGRAPSGATVMECSALDEDFGGLPSRRYTLVTVTRGGREAWRDYVAGMATACCGNDRVAAVGAEDGSVYVYDRNGVRSAPPMVISPPVAYLECC----DKXXXXXXXXXXXXAAQPGEHLMAISGDGDVTVWNLDSMRIVVKTSLSPLFRSLT---------------SSGVSPAAAAASGSXXXXXXXXXXXXXXXXXXXXXXXAKKGVSVARAGVTPEGMPLVMLACHGAPGGSLQAFTFHLGLETWVRVADGRSALSDFYSSGPCTSPSTRGGVLSALQRGVRSGASPSPGAILQAS--KAGKRPAAAMAGAPARESLXXXXXXXXXXXXXXXXXXXXXXXEFEDVLRAYAGHLAKS-AGYGEGRVRTLCDKLML--------ASIGVGKGANIGGDGGSGXXXXXXXXXXXTGELPGLRLCNGPSILGLDKLHLLSKVVLPALSGNRSLQRLVSEYYDNLEYVSKSRRQQLPPPA---PPSPLEQRTPRGPAAAIPHIAEGSSVGSV 1146          
BLAST of mRNA_C-tenellus_contig1170.1.1 vs. uniprot
Match: A0A7S1VV58_9STRA (Protein HIRA n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VV58_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 7.220e-12
Identity = 81/251 (32.27%), Postives = 122/251 (48.61%), Query Frame = 1
Query:  694 VVRAGVTSEGSPLVLMSCP-------GGVGGGLQVFLLHKGLGTWVRVADGRYSLSNFYGSGPC--TVHATGLVSGLQGIVRSSARPSPSALLQASALPATHLSSSAMRGI-TGEGGLQVSVTRTHLEDSMACALMLGSSEEFVDILQAYAGCLAKTCVGANDARVRALCDKLLVGCRPEGDQSVLAVTVGGSEGGANGGALELGARFGSGPTVLGVSKFKLLKEVVLPALGANRSLQRLVHEYSNELSLI 1416
            + R  VT +G  ++++S          G GG LQ FL  + L  W+R+AD R+ LS+FY   P   T    G ++G+   VR     S S  ++A      +  +SAM G  +GEG L  S  R+H ED MACA+ LGSS EF   L  Y   L+   +G  + ++R L D ++      GD S  A++                    S   +LG ++  L+++ V+P +  NRSLQRL +E + +L  I
Sbjct:  513 LARIQVTDKGRLIMILSAQMTNAHHGNGPGGSLQAFLYDRSLELWMRMADSRFVLSDFYSILPSVRTASRKGDLAGMDDAVRGG---SSSGSIRAKR---RNHDTSAMYGAPSGEGNLLAS--RSHCEDRMACAVALGSSHEFESWLVNYVRALS---IGGFEDQLRLLVDLIV------GDDSREALS-----------KTPSCWWLSSATQLLGFNRKTLVRKAVIPEMSKNRSLQRLTNEIALQLDSI 735          
BLAST of mRNA_C-tenellus_contig1170.1.1 vs. uniprot
Match: A0A7S2WVS7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVS7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.650e-11
Identity = 117/466 (25.11%), Postives = 183/466 (39.27%), Query Frame = 1
Query:   88 VLECSPLPQEFRSLPARRYTRVTMFR-----GGKVVWSNFLAGIATSCCGNSRVGAVGVEDGSIYI-YDRSGTLVAPALVISPP--VAYLECSGDVQDPTTSISSKYPQNRRGVVGDQ---LMAISGEGEVFVWDLDAMSLTVKGSL---------GPLMRSLSLGSSLASQSPTSTTAGKGRDQGETAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVVRAGVTSEGSPLVLMSCPGGVGGGLQVFLLHKGLGTWVRVADGRYSLSNFYGSGPCTVHATGLVSGLQGIVRSSARPSP-SALLQASALPATHLSSSAMRGITGE-GGLQVSVTRTHLEDSMACALMLGSSEEFVDILQAYAGCLAKTCVGANDARVRALCDKLLVGCRPEGDQSVLAVTVGGSEGGANGGALELGARFGSGPTVLGVSKFKLLKEVVLPALGANRSLQRLVHEYSNELSLIN 1419
            V+EC  LP    +L A + +   +F       G+  W   L G A++   +  + AVG E+G+++I + +SG  + PA ++     + +L  S   +DP  +       N           L+ ++  G + VWD+  +    + SL          P  R  ++   L S    +      R+Q                                     +V +     GS     S P      ++ F+LH+GLGTW+RV DGR+  S+F+   P  V  +G    LQ    +S+ P P SALL+      +H          GE  G Q  +T  HLE+ +A    L SS EF +  Q Y   L        ++R+R +CD LL         S L             G+   G   G+   +   S  +LL++VV PA     S QRL  EYS +L  ++
Sbjct:  283 VVECRSLPPA--TLAAVKASGQDVFTVAASTAGRECWRTHLHGQASTVAASQDLIAVGTEEGALHILHAQSGVRLLPAAMLGEGRGIVFLSFSTP-RDPRLAPPPLQTGNGPASTASPVCYLLIVTEGGRLLVWDMSQLRAVAEASLKSLLSPQLENPAAREPNVDRRLLSAQVETREPQDARNQ--------------------------HMLGEQVVVTVLVLSSHVLPGSG----SSPARTHSSVEAFVLHQGLGTWLRVGDGRFFASDFFSMLP-PVSKSGPAERLQAECAASSSPPPASALLRLD----SH----------GEPSGFQAGLTLAHLEERLAATAALRSSHEFREWFQRYVRALVAM---GGESRLRLVCDVLL--------SSSLQ------------GSFPPGTLLGTLSGLATDSGHELLEKVVFPACAGTSSFQRLALEYSAQLKALD 677          
BLAST of mRNA_C-tenellus_contig1170.1.1 vs. uniprot
Match: A0A2K1J8U7_PHYPA (Protein HIRA n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1J8U7_PHYPA)

HSP 1 Score: 75.9 bits (185), Expect = 1.800e-10
Identity = 76/257 (29.57%), Postives = 119/257 (46.30%), Query Frame = 1
Query:  688 VSVVRAGVTSEGSPLVLMSCPGGVGGGLQVFLLHKGLGTWVRVADGRYSLSNFYGSGPCTVHATGLVSGLQ-GIVRSSARPSPSALLQASALPATHLSSSAMRGITGEGGLQVSVTRTHLEDSMACALMLGSSEEFVDILQAYAGCLAKTCVGANDARVRALCDKLLVGCRPEGDQSVLAVTVGGSEGGANGGALELGARFGSGPTVLGVSKFKLLKEVVLPALGANRSLQRLVHEYSNELSLINPPHCLSQSSAPL 1455
            + +V A ++  G+PL+++            F+ + G+  W+RVAD  +  SNF  + P   +  G ++ LQ G+ R++    PS L    +L               E   Q   TR HLE  M+ AL L S+ E+   L AY  CL K    +++AR+R LC++LL    P G                              P +LG+SK +LLKE VLPA+ ANR++QRL++E+ + ++        SQS   +
Sbjct:  806 MKLVSARLSKAGAPLIVLV-------NRHAFIFNIGMCCWLRVADDSFPASNFVSTWPDADN--GELANLQAGVARAAG---PSFLWNRMSL--------------SEEKWQ---TRVHLEVQMSSALALKSASEYSRCLVAYVRCLTKE---SDEARLRELCEELLGPVGPVGKLQSWK------------------------PDILGLSKRELLKEFVLPAMAANRAIQRLLNEFIDLVTECEAAEKASQSGGSI 1006          
BLAST of mRNA_C-tenellus_contig1170.1.1 vs. uniprot
Match: A0A1Z5JXZ9_FISSO (Protein HIRA n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JXZ9_FISSO)

HSP 1 Score: 75.1 bits (183), Expect = 3.180e-10
Identity = 114/452 (25.22%), Postives = 187/452 (41.37%), Query Frame = 1
Query:   88 VLEC---SPLPQEFRSLPARRYTRVTMFRGGKVVWSNFLAGIA-TSCCGNSRVGAVGVEDGSIYIYDRS---GTLVAPALVISPPVAYLECSGDVQDPTTSISSKYPQNRRGVVGDQLMAISGEGEVFVWDL-DAMSLTVKGSLGPLMRSLSLGSSLASQSPTSTTAGKGRDQGETAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVVRAGVTSEGSPLVLMSCPGG----VGGGLQVFLLHKGLGTWVRVADGRYSLSNFYGSGPCTVHATGLVSGLQGIVRSSARPSPSALLQASALPATHLSSSAMRGITGEGGLQVSVTRTHLEDSMACALMLGSSEEFVDILQAYAGCLAKTCVGANDARVRALCDKLLVGCRPEGDQSVLAVTVGGSEGGANGGALELGARFGSGPTVLGVSKFKLLKEVVLPALGANRSLQRLVHEYSNEL 1407
            ++EC   S +P   +  P      V + +   V WS+ + G + T+   ++R+ A+G  DGSI +Y  S   G L A A    PP+ +   SG V      +S +  +    +   Q++ ++ +G   ++ +   +SL  KGS+ P M  ++L +S                                                      + R  +T     L+L+S P G    VGG +Q F+ +     W+R+AD R+ LS+FY S P    A G ++ +   V+  A  S         L A+H ++SA+     EG      TR H ED +ACA+   S  E+    + + G L +      D     L  ++++G  P         T G  E  ++   L L       P +L   + +L++ VVLP +  NRSLQRL +E S E+
Sbjct:  689 IVECTNSSKIPSGSKGNPVPCID-VVIKKDSTVTWSDQIVGTSCTALSASNRLLAIGTADGSIQLYGNSPSIGWLAANAFRSHPPLIF---SGAV------VSLRLEETDALL---QMLVVTSDGSFGLYSVFPRLSLMKKGSILPPMTHMALSAS----------------------------------------------NKNFVYPQLSRIQITRNNQLLLLLSFPNGESRGVGGSIQSFVYNDLSELWMRLADSRFVLSDFYSSLPSRSPA-GPLTEMDDSVKLGALEST--------LKASHRNASAIYLQGSEGNFLA--TRAHCEDRLACAVAFESGPEY----RLWLGKLVRILSMTGDETGLRLLTEMILGRGP---------TNGADEDNSSCWWLSLS------PEILKQDRKELIRSVVLPEMSKNRSLQRLTNELSLEI 1051          
BLAST of mRNA_C-tenellus_contig1170.1.1 vs. uniprot
Match: UPI0002C337A7 (protein HIRA-like isoform X1 n=2 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C337A7)

HSP 1 Score: 73.9 bits (180), Expect = 7.210e-10
Identity = 75/262 (28.63%), Postives = 120/262 (45.80%), Query Frame = 1
Query:  688 VSVVRAGVTSEGSPLVLMSCPGGVGGGLQVFLLHKGLGTWVRVADGRYSLSNFYGSGPCTVHATGLVSGLQGIVRSSARPSPSALLQASALPATHLSSSAMRGITGEGGLQVSVTRTHLEDSMACALMLGSSEEFVDILQAYAGCLAKTCVGANDARVRALCDKLLVGCRPEGDQSVLAVTVGGSEGGANGGALELGARFGSGPTVLGVSKFKLLKEVVLPALGANRSLQRLVHEYSNELSLINPPHCLSQSSAPLEVRSKS 1473
            + V+ A ++  GSPLV+++           FL   GL  W+RVAD  +S SNF  S    +  +G ++GLQ  V+      P                     +T +G +Q   TR HLE  +A  L L S  E+   L +Y   LA+    A+++R+R +C+  L      G  + +      S+                 P VLG+SK KLL+E +LPA+ +NR +QRL++E+ + +S           SA + ++SK+
Sbjct:  757 IKVISAKLSRSGSPLVVLATR-------HAFLFDMGLMCWLRVADDCFSGSNFASSWHLGLTQSGELAGLQVDVKKYLARKPG-----------------WSRVTDDG-VQ---TRAHLEAQLASLLALKSPNEYRQCLLSYIRFLARE---ADESRLREVCESFL------GPPTGMVEATSDSK------------NLAWDPFVLGMSKHKLLREDILPAMASNRKVQRLLNEFMDLIS--------EYESAEVNIKSKT 961          
BLAST of mRNA_C-tenellus_contig1170.1.1 vs. uniprot
Match: A0A448YVK3_9STRA (Hira domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVK3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.350e-9
Identity = 118/449 (26.28%), Postives = 171/449 (38.08%), Query Frame = 1
Query:  151 VTMFRGGKVVWSNFLAGIATSCCGNSRVGA---VGVEDGSIYIYDRSGTL---------VAPALVISPPVAYLECSGDVQDPTTSISSKYPQNRRGVVGDQLMAISGEGEVFVWDLDA-MSLTVKGSLGPLMRSLSLGSSLASQSPTSTTAGKGRDQGETAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVVRAGVTSEGSPLVLMSCPGGVGGGLQVFLLHKGLGTWVRVADGRYSLSNFYGSGPCTVH------ATGLVSGLQGIVRSSARPSP-------SALLQASALPATHLSSSAMRGITGEGGLQVSVTRTHLEDSMACALMLGSSEEFVDILQAYAGCLAKTCVGANDARVRALCDKLLVGCRPEGDQSVLAVTVGGSEGGANGGALELGARFGSGPTVLGVSKFKLLKEVVLPALGANRSLQRLVHEYSNELSLIN 1419
            +++ +GG+ +W + L G  ++CC  +   +   VG  DG + IY  S TL           P  V+  P+  L                    R G    +L+ +S +G   V+ L+  + L  KGSL P M  + L + L +       A                                             RAG  +  +P V      G GG LQ F+       W+RVAD R+ LS+FY S P            G +S L   VR  A  S         ++L  S    T   ++  R    E    V  +R+H ED MACAL LGS  EF      Y   LA T    N+  +R + D +L+G  P G  +         E   N     L       P VL   + KL+  VV+P +  NR+LQRL +E + E+ L++
Sbjct:  947 LSISKGGQSLWKDQLPG--STCCAIAASKSWLVVGTSDGCLQIYGTSPTLGWQSASAFRSHPPFVLGRPIVALHL------------------REGGAQTELLVVSSDGRFGVYVLEPRLKLLYKGSLLPAMTHVLLSADLQTDLYLPKLA--------------RIQLTETNRLLLLLSLRSASTPGRNSGPDEGRAGRGTNQAPSV------GAGGSLQGFVYDLESELWMRVADSRFVLSDFYNSLPSFSSLKKQSTTDGPLSKLDDYVRMGAGSSSLQRSRRARSILGNSVSFQTSTVTTTSRQNDDEANNDVD-SRSHCEDRMACALALGSVSEFEFWFSMYVKILALT---GNEVLLRLVID-MLMGKYPSGASN--------GEAACNSTCWWLS----ESPMVLTFDRVKLVSTVVIPEMSKNRALQRLTNEIAVEVELLH 1338          
BLAST of mRNA_C-tenellus_contig1170.1.1 vs. uniprot
Match: B5Y4W6_PHATC (Protein HIRA n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y4W6_PHATC)

HSP 1 Score: 72.0 bits (175), Expect = 2.980e-9
Identity = 101/410 (24.63%), Postives = 154/410 (37.56%), Query Frame = 1
Query:   88 VLECS-----PLPQEFRSLPARRYTRVTMFRGGKVVWSNFLAGIATSC-CGNSRVGAVGVEDGSIYIYDRSGTL---------VAPALVISPPVAYLECSGDVQDPTTSISSKYPQNRRGVVGDQLMAISGEGEVFVWD-LDAMSLTVKGSLGPLMRSLSLGSSLASQSPTSTTAGKGRDQGETAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVVRAGVTSEGSPLVLMSCP------------------GGVGGGLQVFLLHKGLGTWVRVADGRYSLSNFYGSGPCTVHA-TGLVSGLQGIVRSSARPSPSALLQASALPAT---------HLSSSAMRGITGEGGLQVSVTRTHLEDSMACALMLGSSEEFVDILQAYAGCLAKTCVGANDARVRALCDKLL 1185
            V EC+     P+     S+P      V + R GK+ W + + G + S    ++ + AVG  DG + +Y  S T+           P+LV+  P+              S+  +  Q     +   L+ ++G+G   V+  L  + L  KGS+ P M  ++LG+SL S+  +                                             + + R  +T     L+L+S                     GVGG LQ F+  +    W++ AD R+ LS+FY + P    +  G +S L+  VR  A       LQAS  PA          H      R     G      TR H ED MACA+ L S++EF   L  Y   L   CV  +   +R L D L+
Sbjct:  822 VAECTNSVKLPVGSRTTSIPC---VDVALSRDGKISWKDQIPGTSCSAIAASTTLMAVGTTDGCLQLYGTSPTIGWTCGQSFRSHPSLVLGHPIV-------------SLQLQETQGEDDEIFATLLTLTGDGTFAVYSVLPVLQLQFKGSVMPAMSHMALGTSLTSEQHS---------------------------------------------IKISRIQITETNRVLLLLSLQTVDNAQLRGGLRGTTQIDAGVGGSLQAFVFDQKAELWMKAADNRFVLSDFYSALPSAKFSPNGELSRLEDAVRIGA-------LQASMKPAQRGRLRDTDRHADEMFSRADLESGNFIP--TRAHCEDRMACAIALESADEFKKWLSLYIKVL---CVVGHTDFLRVLVDILM 1158          
BLAST of mRNA_C-tenellus_contig1170.1.1 vs. uniprot
Match: A0A1Z5JDQ7_FISSO (Protein HIRA n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JDQ7_FISSO)

HSP 1 Score: 68.9 bits (167), Expect = 2.580e-8
Identity = 114/462 (24.68%), Postives = 182/462 (39.39%), Query Frame = 1
Query:   88 VLEC---SPLPQEFRSLPARRYTRVTMFRGGKVVWSNFLAGIATSCCG---NSRVGAVGVEDGSIYIYDRS---GTLVAPALVISPPVAYLECSGDVQDPTTSISSKYPQNRRGVVGDQLMAISGEGEVFVWDL-DAMSLTVKGSLGPLMRSLSLGSSLASQSPTSTTAGKGRDQGETAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVVRAGVTSEGSPLVLMSCPG------GVGGGLQVFLLHKGLGTWVRVADGRYSLSNFYGSGPCTVHATGLVSGLQGIVRSSARPSPSALLQASALPATHLSSSAMRGITGEGGLQVSVTRTHLEDSMACALMLGSSEEFVDILQAYAGCLAKTCVGANDARVRALCDKLLVGCRPE------GDQSVLAVTVGGSEGGANGGALELGARFGSGPTVLGVSKFKLLKEVVLPALGANRSLQRLVHEYSNEL 1407
            ++EC   S +P   +  P      V + +     WS+ + G  TSC     ++R  A+G  DGSI +Y  S   G L A A    PP   L CSG V      +S +  +    +   Q++ ++ +G   +  +   +SL  KGS+ P M  ++L            +A   +D                                      + R  +T     L+L+S         GVGG +Q F+ +     W+R+AD R+ LS+FY S P    A G ++ +   V+  A  S         L A+H ++SA+     E       TR H ED +ACA+   S  E+    + + G L +      D     L  ++++G  P        D S   +++                     P VL   + +L++ VVLP +  NRSLQRL +E S E+
Sbjct:  709 IVECTNSSKIPSGAKGNPVPCID-VVIKKDNTATWSDQIVG--TSCAAVSASNRFLAIGTADGSIQLYGTSPSIGWLSANAFRSHPP---LICSGAV------VSLRLEETEASL---QMLVVTSDGSFGLHTVFPRLSLVKKGSILPPMTHMAL------------SAASNKD---------------------------------LVYPQLSRIQITKNNQLLLLLSFSNTNRESCGVGGSVQSFVYNDMSELWMRLADSRFVLSDFYSSLPSRSPA-GRLTEIDDSVKLGALEST--------LKASHRNASAIYLQGSEKSGNFLATRAHCEDRLACAVAFESGPEY----RLWLGRLVRILSITGDETGLRLLTEMILGRGPSLTNGVGNDDSCWWLSL--------------------SPEVLKQDRKELIQSVVLPEMSKNRSLQRLTNELSLEI 1077          
BLAST of mRNA_C-tenellus_contig1170.1.1 vs. uniprot
Match: A0A1Y1I787_KLENI (Protein HIRA n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I787_KLENI)

HSP 1 Score: 62.8 bits (151), Expect = 1.990e-6
Identity = 69/240 (28.75%), Postives = 107/240 (44.58%), Query Frame = 1
Query:  691 SVVRAGVTSEGSPLVLMSCPGGVGGGLQVFLLHKGLGTWVRVADGRYSLSNFYG--SGPCTVHATGLVSGLQGIVRSSARPSP---SALLQASALPATHLSSSAMRGITGEGGLQVSVTRTHLEDSMACALMLGSSEEFVDILQAYAGCLAKTCVGANDARVRALCDKLLVGCRPEGDQSVLAVTVGGSEGGANGGALELGARFGSGPTVLGVSKFKLLKEVVLPALGANRSLQRLVHEY 1395
            ++V    +  G+PL+++S         +  + H G+  W+R+AD  +  S F        + H    ++ LQ  V +  R      + LL  SA                EG  Q   +R HLE  +A A+ + S  E+   L AYA  L +    A++ R+R LC            Q  LA T  GSE                G +VLG+SK +LL+ V+LPA+ ANR++QRL++E+
Sbjct:  766 TIVSLRFSKAGAPLIVLS-------NREAHMYHLGMRCWLRIADESFPASEFTSVRGADASGHEKEDLTVLQAEVAAQGRGRRGLFNPLLDISA---------------AEGQAQ---SRAHLESQLAAAVTMNSPTEYKRWLTAYARHLTRE---ADEGRLRELC------------QEFLAPTGSGSE----------------GASVLGMSKRELLQAVILPAMSANRAVQRLLNEF 949          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1170.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KT61_9PHAE1.090e-8645.38Hira domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S1VV58_9STRA7.220e-1232.27Protein HIRA n=1 Tax=Grammatophora oceanica TaxID=... [more]
A0A7S2WVS7_9STRA3.650e-1125.11Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2K1J8U7_PHYPA1.800e-1029.57Protein HIRA n=3 Tax=Physcomitrium patens TaxID=32... [more]
A0A1Z5JXZ9_FISSO3.180e-1025.22Protein HIRA n=1 Tax=Fistulifera solaris TaxID=151... [more]
UPI0002C337A77.210e-1028.63protein HIRA-like isoform X1 n=2 Tax=Fragaria vesc... [more]
A0A448YVK3_9STRA2.350e-926.28Hira domain-containing protein n=1 Tax=Pseudo-nitz... [more]
B5Y4W6_PHATC2.980e-924.63Protein HIRA n=2 Tax=Phaeodactylum tricornutum Tax... [more]
A0A1Z5JDQ7_FISSO2.580e-824.68Protein HIRA n=1 Tax=Fistulifera solaris TaxID=151... [more]
A0A1Y1I787_KLENI1.990e-628.75Protein HIRA n=1 Tax=Klebsormidium nitens TaxID=10... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1170contigC-tenellus_contig1170:824..4569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCZ9
Preferred nameHIRA
PFAMsHIRA_B,Hira,WD40
Model size2017
Max annot lvl2759|Eukaryota
KEGG koko:K11293
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000122,GO:0000228,GO:0000278,GO:0000280,GO:0000417,GO:0000775,GO:0000785,GO:0000790,GO:0000819,GO:0001503,GO:0001649,GO:0001673,GO:0001674,GO:0003674,GO:0003682,GO:0003700,GO:0003712,GO:0003714,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006342,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007049,GO:0007059,GO:0007275,GO:0007338,GO:0007369,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009566,GO:0009653,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016604,GO:0016605,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0030447,GO:0030448,GO:0030466,GO:0030702,GO:0030874,GO:0030875,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031491,GO:0031497,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0034401,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035039,GO:0035041,GO:0035042,GO:0040007,GO:0040029,GO:0042585,GO:0042692,GO:0043044,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0044877,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048598,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0060255,GO:0060968,GO:0061061,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0070925,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097549,GO:0097659,GO:0098687,GO:0098813,GO:0140014,GO:0140110,GO:1900239,GO:1901360,GO:1901362,GO:1901576,GO:1902275,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:2000112,GO:2000113,GO:2001141
Exons5
Evalue2.26e-87
EggNOG OGsKOG0973@1|root,KOG0973@2759|Eukaryota
DescriptionDNA replication-independent nucleosome assembly
Cds size1680
COG categoryK
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1170.1.1prot_C-tenellus_contig1170.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1170 857..4265 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789190.779971-UTR-C-tenellus_contig1170:823..8561680789190.779971-UTR-C-tenellus_contig1170:823..856Choristocarpus tenellus KU2346UTRC-tenellus_contig1170 824..856 +
1680789190.8509994-UTR-C-tenellus_contig1170:4265..45691680789190.8509994-UTR-C-tenellus_contig1170:4265..4569Choristocarpus tenellus KU2346UTRC-tenellus_contig1170 4266..4569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789190.7946367-CDS-C-tenellus_contig1170:856..11011680789190.7946367-CDS-C-tenellus_contig1170:856..1101Choristocarpus tenellus KU2346CDSC-tenellus_contig1170 857..1101 +
1680789190.8057761-CDS-C-tenellus_contig1170:1820..23691680789190.8057761-CDS-C-tenellus_contig1170:1820..2369Choristocarpus tenellus KU2346CDSC-tenellus_contig1170 1821..2369 +
1680789190.8170044-CDS-C-tenellus_contig1170:2730..30601680789190.8170044-CDS-C-tenellus_contig1170:2730..3060Choristocarpus tenellus KU2346CDSC-tenellus_contig1170 2731..3060 +
1680789190.8283637-CDS-C-tenellus_contig1170:3394..35751680789190.8283637-CDS-C-tenellus_contig1170:3394..3575Choristocarpus tenellus KU2346CDSC-tenellus_contig1170 3395..3575 +
1680789190.840691-CDS-C-tenellus_contig1170:3890..42651680789190.840691-CDS-C-tenellus_contig1170:3890..4265Choristocarpus tenellus KU2346CDSC-tenellus_contig1170 3891..4265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1170.1.1

>prot_C-tenellus_contig1170.1.1 ID=prot_C-tenellus_contig1170.1.1|Name=mRNA_C-tenellus_contig1170.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=560bp
MAGLGLENERGGRIGKSGVLECSPLPQEFRSLPARRYTRVTMFRGGKVVW
SNFLAGIATSCCGNSRVGAVGVEDGSIYIYDRSGTLVAPALVISPPVAYL
ECSGDVQDPTTSISSKYPQNRRGVVGDQLMAISGEGEVFVWDLDAMSLTV
KGSLGPLMRSLSLGSSLASQSPTSTTAGKGRDQGETAGGQARASGGDAVH
TGGGAGGSAATTGGSGGGVSVVRAGVTSEGSPLVLMSCPGGVGGGLQVFL
LHKGLGTWVRVADGRYSLSNFYGSGPCTVHATGLVSGLQGIVRSSARPSP
SALLQASALPATHLSSSAMRGITGEGGLQVSVTRTHLEDSMACALMLGSS
EEFVDILQAYAGCLAKTCVGANDARVRALCDKLLVGCRPEGDQSVLAVTV
GGSEGGANGGALELGARFGSGPTVLGVSKFKLLKEVVLPALGANRSLQRL
VHEYSNELSLINPPHCLSQSSAPLEVRSKSVPGNAVNGVTNGVGGGAVEE
VRRIANANGGLSQNAADTVLGGKGVSEEVAVNEDVSQGDSTSSGLKSAGT
TQDETVRSG*
back to top

mRNA from alignment at C-tenellus_contig1170:824..4569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1170.1.1 ID=mRNA_C-tenellus_contig1170.1.1|Name=mRNA_C-tenellus_contig1170.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3746bp|location=Sequence derived from alignment at C-tenellus_contig1170:824..4569+ (Choristocarpus tenellus KU2346)
ACTGGACGGGGGGGAGGGGAGGAGGGCGTGGGTATGGCAGGGTTAGGTTT GGAGAATGAAAGGGGGGGTAGGATCGGCAAGAGTGGGGTATTGGAGTGCT CACCTCTTCCGCAAGAGTTTCGGAGCCTCCCGGCTCGCAGATACACGAGG GTGACCATGTTCAGGGGAGGGAAGGTGGTGTGGAGTAACTTTTTGGCTGG GATCGCGACCTCCTGCTGCGGGAACTCAAGGGTTGGGGCGGTTGGAGTGG AGGATGGATCTATTTATATCTATGACCGGTGAGGAATGGTATTGAATATG TTGCCTGTGCCATCTCTGTTGTTCTTTTTGCTACTACATCGATGATGTGT GAATGAATGTGTAAGGATCTTTGTGGGCTCACTGTTAGTTCGATGGGGGG GGTGGGGCTTGCGAATTTGACCAGGGGAGTACTTGTGATTCCATGTGCTT TTGGTTTGCATTATCGTACTCAGTTGCACACAGTGGCATAGTGCTGTACC AGGCTTTTCTTGTGTGATGTCACGAAGTAGTAATGTTCACCTACATTTGG AATGCCCATGGAGACATGTACGTGGACATTGCTACAAGTAAAACTGCAGT AACAATGACCTTCAAAGGCCCTTGCTTCACCTTGGAGTGAATGTATCTTA GAGGGTACGAGTTTTGCCCTGTTTGTCCATTTGGGGCTTGGCTTCCCATG TTTTGTTTAACGGCATTTTCCCACTCCGAAATGTTTTGGAGTGGGAAAAA TGTATACGTTATGAAAAGGTGTGTCCAGAACATGGATATTGATGCTTCCT AACAAACACGATGGCCAAAATTACATCAAAATCACAACATTGGATTTTGA CCCCCAAATGGACATGCTCTACCCTCCAAGATACTTTGGCTCTTGTCACA CATACTTGGCTTTTTATCATTCCCCAACTGACCCCTCCTTTCCTCTTTCC CTCCATCCCTCCTCCCATACAATGTCAATAACTTCTTTCCGAGACAGGAG TGGGACTCTGGTGGCCCCAGCACTGGTCATTTCCCCCCCAGTTGCTTATT TGGAATGCAGTGGAGATGTGCAGGACCCCACCACCTCTATCAGCAGCAAA TACCCACAAAATAGACGTGGCGTTGTGGGCGATCAGCTTATGGCCATCTC AGGGGAAGGGGAGGTTTTTGTGTGGGATCTGGATGCTATGTCTTTGACTG TAAAAGGCTCCTTGGGTCCTCTAATGCGGTCATTGTCTTTGGGCAGCTCC CTTGCCTCTCAGTCTCCTACCTCAACTACTGCTGGTAAGGGAAGAGATCA AGGTGAAACTGCAGGAGGTCAGGCCAGGGCATCAGGAGGTGATGCTGTAC ATACAGGGGGTGGTGCAGGAGGCTCTGCGGCAACCACAGGGGGCTCTGGG GGAGGTGTGAGTGTGGTGAGGGCTGGGGTTACAAGCGAAGGTTCACCCCT AGTTCTTATGTCATGCCCTGGGGGGGTTGGAGGTGGGCTTCAGGTGTTCT TGCTTCACAAGGGACTGGGCACGTGGGTCCGGGTTGCAGATGGAAGGCGA GTTTGAGTGAGAAGGTAGAAGTGGTGATTTTAGAATTTCCTAACAATTTG ATTATCTGTAGGTTTTTTGTCTTTCCAAATGTGCTTGGCATTGTTGAGTT TAGGGGTGGGAGTAGTGCAGTTCATACTATTTTTTTTAATGCTCCTTCCA CTTCGTAGAGACCTCTACTTTGTACCACGTGCTCCATGAACAGTATGGTG TGATATGATGCAGTATAATACTGGGACTAAGTATATACAGTACCCATCCC GTGTTGCCCATCTCTCTAACAATTGTATACGCCTCCCATACATAAACCCT GGTTCCATACCCCGACCCCAATCCCCCCGTCCTCTACACTGTGATGACTC TGTTAAGGTACTCTCTTTCCAACTTTTATGGGTCAGGTCCCTGTACAGTC CATGCCACAGGTTTGGTCTCTGGCCTCCAGGGCATTGTCCGAAGCAGTGC CCGCCCTTCCCCCAGTGCTCTGCTCCAAGCATCAGCTCTGCCTGCAACAC ACCTCTCTTCTTCTGCCATGAGGGGGATTACAGGTGAAGGGGGACTGCAG GTCAGTGTGACGAGAACACACTTGGAAGACTCTATGGCATGCGCCCTTAT GCTCGGCAGCTCAGAGGAGTTTGTTGACATTTTGCAGGCGTATGCAGGGT GTCTGGCGAAGACATGTGTTGGAGCTAATGATGCCAGGTGTGAGATTAAT ACATTGAAAGGGATATAGTTGGTCTATGTATGTGTGAGTGGGGGTGTCTG CATGCATCACTTTCCTCAAGAAGTGGTAGTCTAGAGTAGTATACAGAATA CACACAACCTGAATCTCATAAGAACATATGAGAGCACTCTGTGGTGCAGT TTATGTAACACTTTTCCTATGGGTGTGGATAGTGAGCAGTTGGCACTATA CTTCCTGCAAGAGGTGTTTGAATTGTCCCATTATTGTGAGATATGTATGT AACAGCATCTTGCTCAATGAGCAAATAACTTACACACACAACCTCCTTGT GTGCTCCTTGCATGATTAAAGAGTTCGCGCTTTGTGTGATAAGCTCCTTG TGGGATGTAGACCAGAAGGAGATCAGTCGGTGCTAGCTGTAACGGTTGGA GGCAGTGAGGGCGGTGCCAATGGAGGAGCGCTGGAGCTTGGGGCTCGATT TGGCAGTGGCCCAACTGTATTAGGTGTGAGCAAGTTCAAGTTGCTCAAAG AGGTGAGTACTGGGTGATCTGTCAAGAGAGCAATGTGAAGTTTACTGTTT CAATGAGTCGTTTAAGAATATGCCGGTTGGTGGGGTCAAACAAATCCTGT CAAGTAACAACAATGATTTTTTTTTGTGATAGTAAGATGGGGGAAGAGGG ATGTTGTATGGCTACTGTGATATTGTATTGTGTCAATGCAACGTACAAAC TGTTCTACTGATAGAAATATTGATGTTCATATGAAGTCTGCTCCCTTGAG TCCCCCCCCACCATCTTCCCCCCATTGCCATCTCTTCCCCCTGTGTGGCT GAATGTTGGACATGCAGGTGGTCTTGCCAGCCTTGGGAGCTAACCGATCC CTACAAAGGTTAGTGCATGAGTACTCTAATGAGCTCAGCCTCATCAATCC CCCACATTGCCTGTCACAGAGCAGCGCACCGTTGGAAGTACGATCAAAGT CTGTTCCTGGAAATGCAGTGAATGGTGTAACAAATGGTGTGGGGGGGGGG GCAGTGGAAGAGGTGCGTCGAATAGCAAATGCAAATGGGGGACTTTCCCA AAATGCAGCTGACACTGTTCTGGGTGGAAAAGGTGTTTCAGAGGAGGTGG CAGTGAATGAGGATGTGTCTCAGGGAGATTCCACATCATCAGGATTGAAA TCCGCTGGCACTACCCAAGATGAAACTGTAAGGAGTGGTTGACTCTTCTT GGGGGGTAATTGTGGAATAGGGTTGGAGTGACCGTTCCTCATGTGTGGGA GGTGGGTTGCAAAGGAAGAGCAATACTTGAGTCTACAGTTGTGCCCCGAG AAATAAATCATGATGGCCAGTAATTTTTTGTACAATTGTTTGGGTGTTTC GACCCAGGATGGCGTCAGCTAAATGAAGGATTTTTTCAGGAGGCAGGATG TGACGTCCGAAACTGTGTAGAAAAAAGCATGCTTAAAACAATTGTTATTT GTGAGAATGAGCGTACTACATGGTAGTAGTTGTAGTATGATTACAA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig1170:824..4569+

>mRNA_C-tenellus_contig1170.1.1 ID=mRNA_C-tenellus_contig1170.1.1|Name=mRNA_C-tenellus_contig1170.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1680bp|location=Sequence derived from alignment at C-tenellus_contig1170:824..4569+ (Choristocarpus tenellus KU2346)
ATGGCAGGGTTAGGTTTGGAGAATGAAAGGGGGGGTAGGATCGGCAAGAG
TGGGGTATTGGAGTGCTCACCTCTTCCGCAAGAGTTTCGGAGCCTCCCGG
CTCGCAGATACACGAGGGTGACCATGTTCAGGGGAGGGAAGGTGGTGTGG
AGTAACTTTTTGGCTGGGATCGCGACCTCCTGCTGCGGGAACTCAAGGGT
TGGGGCGGTTGGAGTGGAGGATGGATCTATTTATATCTATGACCGGAGTG
GGACTCTGGTGGCCCCAGCACTGGTCATTTCCCCCCCAGTTGCTTATTTG
GAATGCAGTGGAGATGTGCAGGACCCCACCACCTCTATCAGCAGCAAATA
CCCACAAAATAGACGTGGCGTTGTGGGCGATCAGCTTATGGCCATCTCAG
GGGAAGGGGAGGTTTTTGTGTGGGATCTGGATGCTATGTCTTTGACTGTA
AAAGGCTCCTTGGGTCCTCTAATGCGGTCATTGTCTTTGGGCAGCTCCCT
TGCCTCTCAGTCTCCTACCTCAACTACTGCTGGTAAGGGAAGAGATCAAG
GTGAAACTGCAGGAGGTCAGGCCAGGGCATCAGGAGGTGATGCTGTACAT
ACAGGGGGTGGTGCAGGAGGCTCTGCGGCAACCACAGGGGGCTCTGGGGG
AGGTGTGAGTGTGGTGAGGGCTGGGGTTACAAGCGAAGGTTCACCCCTAG
TTCTTATGTCATGCCCTGGGGGGGTTGGAGGTGGGCTTCAGGTGTTCTTG
CTTCACAAGGGACTGGGCACGTGGGTCCGGGTTGCAGATGGAAGGTACTC
TCTTTCCAACTTTTATGGGTCAGGTCCCTGTACAGTCCATGCCACAGGTT
TGGTCTCTGGCCTCCAGGGCATTGTCCGAAGCAGTGCCCGCCCTTCCCCC
AGTGCTCTGCTCCAAGCATCAGCTCTGCCTGCAACACACCTCTCTTCTTC
TGCCATGAGGGGGATTACAGGTGAAGGGGGACTGCAGGTCAGTGTGACGA
GAACACACTTGGAAGACTCTATGGCATGCGCCCTTATGCTCGGCAGCTCA
GAGGAGTTTGTTGACATTTTGCAGGCGTATGCAGGGTGTCTGGCGAAGAC
ATGTGTTGGAGCTAATGATGCCAGAGTTCGCGCTTTGTGTGATAAGCTCC
TTGTGGGATGTAGACCAGAAGGAGATCAGTCGGTGCTAGCTGTAACGGTT
GGAGGCAGTGAGGGCGGTGCCAATGGAGGAGCGCTGGAGCTTGGGGCTCG
ATTTGGCAGTGGCCCAACTGTATTAGGTGTGAGCAAGTTCAAGTTGCTCA
AAGAGGTGGTCTTGCCAGCCTTGGGAGCTAACCGATCCCTACAAAGGTTA
GTGCATGAGTACTCTAATGAGCTCAGCCTCATCAATCCCCCACATTGCCT
GTCACAGAGCAGCGCACCGTTGGAAGTACGATCAAAGTCTGTTCCTGGAA
ATGCAGTGAATGGTGTAACAAATGGTGTGGGGGGGGGGGCAGTGGAAGAG
GTGCGTCGAATAGCAAATGCAAATGGGGGACTTTCCCAAAATGCAGCTGA
CACTGTTCTGGGTGGAAAAGGTGTTTCAGAGGAGGTGGCAGTGAATGAGG
ATGTGTCTCAGGGAGATTCCACATCATCAGGATTGAAATCCGCTGGCACT
ACCCAAGATGAAACTGTAAGGAGTGGTTGA
back to top