mRNA_C-tenellus_contig117.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig117.5.1
Unique NamemRNA_C-tenellus_contig117.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig117.5.1 vs. uniprot
Match: D8LRX5_ECTSI (LigB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRX5_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 3.910e-93
Identity = 137/248 (55.24%), Postives = 173/248 (69.76%), Query Frame = 1
Query:  334 RYLNCNSEPAEWFRSLAKGWEKPSAIVVISAHWEERDQVLVTSSSKHPLLFDYYGFPDYTYEIEYPCPGDPTLAQSIIELLRAGGVEAGAEETRGYDHGVFVPLKLIYPDADIPVVQVSMRASLGVEQHMKIGMLLSDLQEKHSDILVIGSGQATHNLRTMDPSYPPGVGRKEEDGFVKWLKQTMIDEDLRPEDRKVLLRLWEEKAPHARLAHPREEHLLPLHVVAGYVGFSPGKTVYDRFFLGTMSL 1077
            + ++  S  A+W+R+  K W KPSAIVV+SAHWE R  V VT+  KHPL FDYYGFPDY Y++EY  PG P LA+ IIELL A G  A  +++RGYDHG F+PLKL+YPDAD+PVVQVS+   L  E+H+K+G  L  L ++  D+L++GSGQATH   +    YPPG G  +E+ FV WLK+T     + PE+R+  LR WE  APH R AHPREEHLLPLHV AG  GF PG  ++D F +G MSL
Sbjct:    2 KQIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADVPVVQVSLLGGLDPEKHLKMGKTLKKLVDER-DVLIVGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSL 248          
BLAST of mRNA_C-tenellus_contig117.5.1 vs. uniprot
Match: A0A836CEX8_9STRA (Catalytic LigB subunit of aromatic ring-opening dioxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX8_9STRA)

HSP 1 Score: 235 bits (599), Expect = 6.490e-70
Identity = 127/270 (47.04%), Postives = 165/270 (61.11%), Query Frame = 1
Query:  295 GPCFFMDDDKGTFRYLNCNSEPAEWFRSLAKGWEKPSAIVVISAHWE-ERDQVLVTSSSKHPLLFDYYGFPDYTYEIEYPCPGDPTLAQSIIELLRAGGVEAGAEETRGYDHGVFVPLKLIYPDADIPVVQVSMRASLGVEQHMKIGMLLSDLQEKHSDILVIGSGQATHNLRTMDPSYPPGVGRKEED---GFVKWLKQTMIDEDLRPEDRKVLLRLWEEKAPHARLAHPREEHLLPLHVVAGYVGFSPGKTVYDRFFLGTMSLLSFVF 1092
            GPCFF +   G F  ++ NS  A  FR L+    KP  IV+ +AHWE +  ++ VT      L++DYYGFP  TY++ YP PGDP LA  I+ LL+  G+ A  E  RG+DHGVF+PLK+IYPDAD+PVV +S+ ++L    H+ +G  LS L  +   +LV GSG ATHNL  +  +   G G   E     F+ WLK T+ D     E  + LLR W E+APHAR +HPREEHLLPLHV AG  GF+ G+ V D    G MS+ SF F
Sbjct:   22 GPCFFYEA-AGPFSAIDKNSRVAADFRKLSTVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAGR--GVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDGVSAQERERRLLR-WTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAF 287          
BLAST of mRNA_C-tenellus_contig117.5.1 vs. uniprot
Match: I7ZAX2_9GAMM (Catalytic LigB subunit of aromatic ring-opening dioxygenase n=1 Tax=Hydrocarboniphaga effusa AP103 TaxID=1172194 RepID=I7ZAX2_9GAMM)

HSP 1 Score: 221 bits (562), Expect = 9.270e-65
Identity = 119/259 (45.95%), Postives = 163/259 (62.93%), Query Frame = 1
Query:  295 GPCFFMD-DDKGTFRYLNCNSEPAEWFRSLA-KGWEKPSAIVVISAHWEERDQVLVTSSSKHPLLFDYYGFPDYTYEIEYPCPGDPTLAQSIIELLRAGGVEAGAEETRGYDHGVFVPLKLIYPDADIPVVQVSMRASLGVEQHMKIGMLLSDLQEKHSDILVIGSGQATHNLRTMDPSYPPGVGRKEEDGFVKWLKQTMIDEDLRPEDRKVLLRLWEEKAPHARLAHPREEHLLPLHVVAGYVGFSPGKTVYDRFFLG 1065
            GPCFFM+ +   T+R L        W R L+ +  +KP A++V+SAHWE  ++  VT+  +  L++DYYGFP +TYE++YP PGDP LA+ I+  L   G+ A  +  RG+DHGVFVPLKLIYP ADIPVVQ+S+RA L   +H+ +G  L+ L+E+   +L+IGSG + HN+R        G G++    F +WL + +  +   PE RK  LR WE +AP AR AHPREEHLLPL V AG  G   GK ++     G
Sbjct:   17 GPCFFMEWNPPDTWRSLEA------WLRGLSVEVGDKPRALLVVSAHWEA-ERYSVTAHPQPSLIYDYYGFPQHTYELQYPAPGDPALAEEIVRRLGVAGLPAEIDRERGFDHGVFVPLKLIYPQADIPVVQLSLRAGLNPAEHLAVGAALAPLREQ--GVLIIGSGYSYHNMRGYG-----GAGQRPSIEFDRWLNEALTAD---PETRKERLRDWE-RAPSARAAHPREEHLLPLMVAAGAAGQDIGKRLFGELVFG 257          
BLAST of mRNA_C-tenellus_contig117.5.1 vs. uniprot
Match: A0A2M7G2W7_9BACT (Dioxygenase n=1 Tax=bacterium (Candidatus Blackallbacteria) CG17_big_fil_post_rev_8_21_14_2_50_48_46 TaxID=2014261 RepID=A0A2M7G2W7_9BACT)

HSP 1 Score: 214 bits (545), Expect = 2.920e-62
Identity = 115/258 (44.57%), Postives = 158/258 (61.24%), Query Frame = 1
Query:  295 GPCFFMDDDKGTFRYLNCNSEPAEWFRSLAKGWEKPSAIVVISAHWEERDQVLVTSSSKHPLLFDYYGFPDYTYEIEYPCPGDPTLAQSIIELLRAGGVEAGAEETRGYDHGVFVPLKLIYPDADIPVVQVSMRASLGVEQHMKIGMLLSDLQEKHSDILVIGSGQATHNLRTMDPSYPPGVGRKEEDGFVKWLKQTMIDEDLRPEDRKVLLRLWEEKAPHARLAHPREEHLLPLHVVAGYVGFSPGKTVYDRFFLGT 1068
            GPCFFMD    T+   +   + A+W ++L      P AIVV+SAHWE   +VL+T  ++ PLL+DYYGFP++TY++ YP PG P LA  I   L A  + A  +  RGYDHGVF+PLKLIYP+A IPVVQ+S+ ASL   +H++IG  L+ L+E+   +L++GSG + HNLR    +       ++   F  WL QT+       E+R + L  W  KAP  R  HPREEHLLPL VVAG    + G+ V+    +G+
Sbjct:   14 GPCFFMD---WTWGPADSWDKLADWLKNLRHTLPVPQAIVVVSAHWENSAEVLITGHAQPPLLYDYYGFPEHTYQLSYPAPGAPDLAGKIQTHLAAQAIPARIDAERGYDHGVFIPLKLIYPEAQIPVVQISLLASLDPARHLEIGKALAPLREE--GVLLLGSGMSFHNLRVFGQNV-----MEQSQAFDAWLTQTL---QASAEERNLALADWA-KAPSGRFCHPREEHLLPLMVVAGAAESAKGEKVFTDAIMGS 257          
BLAST of mRNA_C-tenellus_contig117.5.1 vs. uniprot
Match: A0A1B1YYA5_9GAMM (Dioxygenase n=3 Tax=Bacteria TaxID=2 RepID=A0A1B1YYA5_9GAMM)

HSP 1 Score: 213 bits (543), Expect = 6.310e-62
Identity = 121/267 (45.32%), Postives = 161/267 (60.30%), Query Frame = 1
Query:  295 GPCFFMD-DDKGTFRYLNCNSEPAEWFRSLAKGW-EKPSAIVVISAHWEERDQVLVTSSSKHPLLFDYYGFPDYTYEIEYPCPGDPTLAQSIIELLRAGGVEAGAEETRGYDHGVFVPLKLIYPDADIPVVQVSMRASLGVEQHMKIGMLLSDLQEKHSDILVIGSGQATHNLRTMDPSYPPGVGRKEEDGFVKWLKQTMIDEDLRPEDRKVLLRLWEEKAPHARLAHPREEHLLPLHVVAGYVGFSPGKTVY-DRFFLGTMSLLSF 1086
            GPCFFMD +   T+  +      A W R +  G  ++P A+++IS HWEE   V V   ++ PLLFDYYGFP +TY++ YP PGDP LA  + ELL+AGGV   AE  RG DHGVFVP  LIYP AD+P+VQ+S+ A+L    H+ +G LL  L+++   +L++GSG + HN+R +     P    ++   F  WL      E   P  R  LL  WE +AP AR +HPREEHLLPL V AG  G  PG+ V+ DR    T+S  +F
Sbjct:   16 GPCFFMDWNPPDTWERM------AAWLRGIDAGLGQRPRAVLLISGHWEE-PVVSVNIQARPPLLFDYYGFPPHTYQLNYPAPGDPALAARVRELLQAGGVPTRAETERGLDHGVFVPFLLIYPQADVPIVQLSLHANLDAAAHLALGALLEPLRDE--GVLIVGSGMSYHNMRGLMGGADPA---RDSLAFDSWLGDACTAE---PAARSRLLADWE-RAPAARSSHPREEHLLPLMVAAGAGGDDPGRRVFQDRVLGATVSAFAF 266          
BLAST of mRNA_C-tenellus_contig117.5.1 vs. uniprot
Match: A0A1Y0BMB9_9BACT (J571 n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A1Y0BMB9_9BACT)

HSP 1 Score: 213 bits (541), Expect = 1.170e-61
Identity = 121/267 (45.32%), Postives = 161/267 (60.30%), Query Frame = 1
Query:  295 GPCFFMD-DDKGTFRYLNCNSEPAEWFRSLAKGWE-KPSAIVVISAHWEERDQVLVTSSSKHPLLFDYYGFPDYTYEIEYPCPGDPTLAQSIIELLRAGGVEAGAEETRGYDHGVFVPLKLIYPDADIPVVQVSMRASLGVEQHMKIGMLLSDLQEKHSDILVIGSGQATHNLRTMDPSYPPGVGRKEEDGFVKWLKQTMIDEDLRPEDRKVLLRLWEEKAPHARLAHPREEHLLPLHVVAGYVGFSPGKTVY-DRFFLGTMSLLSF 1086
            GPCFFMD +   T+  +      A W R +  G + +P A+++IS HWEE   V V   ++ PLLFDYYGFP +TY +EYP PGDP LA  + ELL+AGGV +  E  RG DHGVFVP  L+YP AD+P+VQ+S+  SL    H+ IG LL  L+++   +L++GSG + HN+R +     PG   ++   F  WL +    E   P  R  LL  WE +AP AR +HPREEHLLPL V AG  G   G+ V+ DR    T+S  +F
Sbjct:   14 GPCFFMDWNPPDTWDRM------AAWLRGIDAGLDQRPKAVLLISGHWEE-PVVSVNVQARPPLLFDYYGFPPHTYRLEYPAPGDPALAARVRELLQAGGVPSRTEAERGLDHGVFVPFLLVYPHADVPIVQLSLHESLDAGTHLAIGALLEPLRDQ--GVLIVGSGMSYHNMRGLMGGGDPG---RDSLAFDTWLGEACTAE---PATRSRLLADWE-RAPAARASHPREEHLLPLMVAAGAAGADIGRRVFHDRVLGATVSAFAF 264          
BLAST of mRNA_C-tenellus_contig117.5.1 vs. uniprot
Match: A0A1M5QQY5_9GAMM (Aromatic ring-opening dioxygenase, catalytic subunit, LigB family n=1 Tax=Hydrocarboniphaga daqingensis TaxID=490188 RepID=A0A1M5QQY5_9GAMM)

HSP 1 Score: 212 bits (540), Expect = 1.690e-61
Identity = 119/258 (46.12%), Postives = 161/258 (62.40%), Query Frame = 1
Query:  295 GPCFFMD-DDKGTFRYLNCNSEPAEWFRSLAKGWE---KPSAIVVISAHWEERDQVLVTSSSKHPLLFDYYGFPDYTYEIEYPCPGDPTLAQSIIELLRAGGVEAGAEETRGYDHGVFVPLKLIYPDADIPVVQVSMRASLGVEQHMKIGMLLSDLQEKHSDILVIGSGQATHNLRTMDPSYPPGVGRKEEDGFVKWLKQTMIDEDLRPEDRKVLLRLWEEKAPHARLAHPREEHLLPLHVVAGYVGFSPGKTVY-DR 1053
            GPCFFMD +   T+  L        W R +  G E   +P+AI+V+SAHWE  D   VT +++  L++DY+GFP +TY+++YP PG PTLAQ I+E LRA G+ +  ++ RG+DHGVFVPL L++PDADIPVVQ+S+R  L   +H+  G  L+ L+++   +L++GSG + HN+R        G G +    F  WL+ T+      P  R   LR WE+ AP AR AHPREEHLLPL V AG  G S G  VY DR
Sbjct:   17 GPCFFMDWNPPDTWTSLG------NWLRGI--GGEISARPTAIIVVSAHWEA-DDFSVTGAAQPSLIYDYHGFPPHTYQLQYPAPGAPTLAQQIVERLRAAGLPSQRDDARGWDHGVFVPLMLMFPDADIPVVQLSLRRGLDAAEHLAAGAALAGLRDE--GVLIVGSGYSYHNMRGYG-----GAGERAAAEFDGWLQTTITA--TAPAQRAAALRRWED-APSARAAHPREEHLLPLMVAAGAAGDSAGTCVYTDR 255          
BLAST of mRNA_C-tenellus_contig117.5.1 vs. uniprot
Match: A0A522CMS9_9PROT (Dioxygenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A522CMS9_9PROT)

HSP 1 Score: 211 bits (538), Expect = 3.050e-61
Identity = 122/255 (47.84%), Postives = 155/255 (60.78%), Query Frame = 1
Query:  295 GPCFFMD-DDKGTFRYLNCNSEPAEWFRSLAKGW-EKPSAIVVISAHWEERDQVLVTSSSKHPLLFDYYGFPDYTYEIEYPCPGDPTLAQSIIELLRAGGVEAGAEETRGYDHGVFVPLKLIYPDADIPVVQVSMRASLGVEQHMKIGMLLSDLQEKHSDILVIGSGQATHNLRTMDPSYPPGVGRKEEDGFVKWLKQTMIDEDLRPEDRKVLLRLWEEKAPHARLAHPREEHLLPLHVVAGYVGFSPG-KTVYD 1050
            GPCFFMD D   T++ +       +W +SL     EKP AI+VISAHWEE D   V S+   PL++DYYGFP  TYE++YP PG P LA+ +  LL   G+ A   + RGYDHGVFVPLKLIYPDA+IPVVQ+S+R +L   QH+  G  L+ L+++   +L++GSG + HNL         G  +K    F  WL Q        P+ R  +L  W E AP AR AHPREEHLLPL VVAG  G   G +T+ D
Sbjct:   14 GPCFFMDWDPPDTWKKMG------DWLKSLPSSMPEKPKAILVISAHWEE-DAFTVMSNPAPPLIYDYYGFPPETYELKYPAPGAPDLAKKVAGLLENAGLPARLNDARGYDHGVFVPLKLIYPDAEIPVVQLSLRRNLDPAQHLAAGRALASLRDE--GVLIVGSGMSYHNLEKFFRGDRQGDSQK----FDAWLTQAATSA---PQQRDDMLVHWAE-APSARQAHPREEHLLPLMVVAGAAGGDAGHQTLSD 251          
BLAST of mRNA_C-tenellus_contig117.5.1 vs. uniprot
Match: A0A2T6E2T7_9GAMM (Dioxygenase n=1 Tax=Saccharospirillum sp. MSK14-1 TaxID=1897632 RepID=A0A2T6E2T7_9GAMM)

HSP 1 Score: 210 bits (534), Expect = 1.300e-60
Identity = 111/263 (42.21%), Postives = 154/263 (58.56%), Query Frame = 1
Query:  295 GPCFFMDDDKGTFRYLNCNSEPA--EWFRSLAKGWEKPSAIVVISAHWEERDQVLVTSSSKHPLLFDYYGFPDYTYEIEYPCPGDPTLAQSIIELLRAGGVEAGAEETRGYDHGVFVPLKLIYPDADIPVVQVSMRASLGVEQHMKIGMLLSDLQEKHSDILVIGSGQATHNLRTMDPSYPPGVGRKEEDGFVKWLKQTMIDEDLRPEDRKVLLRLWEEKAPHARLAHPREEHLLPLHVVAGYVGFSPGKTVYDRFFLGTMSL 1077
             P FF+    G    +N  S  A  +  + ++  WEKP A++VISAHWE  DQ  V +     L FDYYGFP  TY  EYP        Q+I   L   G+  G E  RGYDHGVFVP+KLIYP+AD+PV+QVS+   L  + H+++G  L+ L+E+   +++IGSG + HN+R  +  +  G    + + F +WL + + D DL P+ R+  L  W E APHAR  HPREEHLLPLHV  G    +P + V+D+  LG  ++
Sbjct:    5 APVFFLPHGGGPLPLMNDPSHQAIIDLLKQVSTRWEKPKAVLVISAHWEA-DQPTVLADVDPGLYFDYYGFPAETYTYEYPTQNPQPWQQAIAAALDDAGLSFGRETGRGYDHGVFVPMKLIYPEADLPVMQVSLVKGLDPQAHLELGRALASLREQ--GVMIIGSGFSFHNMRAYN--FQGGEASPQSEAFHQWLVEQLTDADLSPQQRQDALAAWTE-APHARFCHPREEHLLPLHVCVGAANGAPAEIVFDQAMLGQRAI 261          
BLAST of mRNA_C-tenellus_contig117.5.1 vs. uniprot
Match: UPI001EF204CD (dioxygenase n=1 Tax=Candidatus Nitrotoga sp. M5 TaxID=2890409 RepID=UPI001EF204CD)

HSP 1 Score: 209 bits (533), Expect = 1.940e-60
Identity = 106/226 (46.90%), Postives = 148/226 (65.49%), Query Frame = 1
Query:  349 NSEPAEWFRSLAKGWEKPSAIVVISAHWEERDQVLVTSSSKHPLLFDYYGFPDYTYEIEYPCPGDPTLAQSIIELLRAGGVEAGAEETRGYDHGVFVPLKLIYPDADIPVVQVSMRASLGVEQHMKIGMLLSDLQEKHSDILVIGSGQATHNLRTMDPSYPPGVG--RKEEDGFVKWLKQTMIDEDLRPEDRKVLLRLWEEKAPHARLAHPREEHLLPLHVVAGYV 1020
            + E  +  ++++   EKPSAI+V+SAHWEE     +TS S  PL++DYYGFPD +Y+I YPCPG P LA+ I +L    G+++  +ETRG+DHG+FVPLKL+YP+ADIP VQ+S+  +L  E+H+K+G +L  L +  S +LVIGSG + HNL+     + P     + + + F  WL +T    +L   +R   L  WE  AP AR  HPREEHLLPLHV  GY+
Sbjct:   25 HDEMVQCLKNISATIEKPSAIIVVSAHWEESCST-ITSGSNPPLIYDYYGFPDESYQITYPCPGQPLLARKIAKLFSEAGIQSSLDETRGFDHGLFVPLKLMYPEADIPCVQISLLKNLQPEEHVKVGQVLQKLND--SSLLVIGSGFSFHNLQAF---FAPNTADTKVQNESFEAWLLETCGSLELGERERMNRLINWE-AAPFARYCHPREEHLLPLHVCYGYI 243          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig117.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRX5_ECTSI3.910e-9355.24LigB domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CEX8_9STRA6.490e-7047.04Catalytic LigB subunit of aromatic ring-opening di... [more]
I7ZAX2_9GAMM9.270e-6545.95Catalytic LigB subunit of aromatic ring-opening di... [more]
A0A2M7G2W7_9BACT2.920e-6244.57Dioxygenase n=1 Tax=bacterium (Candidatus Blackall... [more]
A0A1B1YYA5_9GAMM6.310e-6245.32Dioxygenase n=3 Tax=Bacteria TaxID=2 RepID=A0A1B1Y... [more]
A0A1Y0BMB9_9BACT1.170e-6145.32J571 n=1 Tax=uncultured bacterium TaxID=77133 RepI... [more]
A0A1M5QQY5_9GAMM1.690e-6146.12Aromatic ring-opening dioxygenase, catalytic subun... [more]
A0A522CMS9_9PROT3.050e-6147.84Dioxygenase n=1 Tax=Alphaproteobacteria bacterium ... [more]
A0A2T6E2T7_9GAMM1.300e-6042.21Dioxygenase n=1 Tax=Saccharospirillum sp. MSK14-1 ... [more]
UPI001EF204CD1.940e-6046.90dioxygenase n=1 Tax=Candidatus Nitrotoga sp. M5 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig117contigC-tenellus_contig117:7535..10340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRX5
PFAMsLigB
Model size1605
Max annot lvl2759|Eukaryota
KEGG rclassRC00387
KEGG koko:K15777
KEGG ReactionR08836
KEGG Pathwayko00965,map00965
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.06e-97
EggNOG OGsCOG3384@1|root,2QS66@2759|Eukaryota
Ec32 ortholog descriptionExtradiol ring-cleavage dioxygenase, class III enzyme, subunit B
Ec32 orthologEc-08_002800.1
Descriptionferrous iron binding
Cds size843
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789190.415077-UTR-C-tenellus_contig117:7534..78431680789190.415077-UTR-C-tenellus_contig117:7534..7843Choristocarpus tenellus KU2346UTRC-tenellus_contig117 7535..7843 +
1680789190.4614592-UTR-C-tenellus_contig117:9887..103401680789190.4614592-UTR-C-tenellus_contig117:9887..10340Choristocarpus tenellus KU2346UTRC-tenellus_contig117 9888..10340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789190.4312956-CDS-C-tenellus_contig117:7843..82181680789190.4312956-CDS-C-tenellus_contig117:7843..8218Choristocarpus tenellus KU2346CDSC-tenellus_contig117 7844..8218 +
1680789190.442314-CDS-C-tenellus_contig117:8496..86041680789190.442314-CDS-C-tenellus_contig117:8496..8604Choristocarpus tenellus KU2346CDSC-tenellus_contig117 8497..8604 +
1680789190.4533086-CDS-C-tenellus_contig117:9527..98871680789190.4533086-CDS-C-tenellus_contig117:9527..9887Choristocarpus tenellus KU2346CDSC-tenellus_contig117 9528..9887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig117.5.1prot_C-tenellus_contig117.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig117 7844..9887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig117.5.1

>prot_C-tenellus_contig117.5.1 ID=prot_C-tenellus_contig117.5.1|Name=mRNA_C-tenellus_contig117.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=281bp
MDDDKGTFRYLNCNSEPAEWFRSLAKGWEKPSAIVVISAHWEERDQVLVT
SSSKHPLLFDYYGFPDYTYEIEYPCPGDPTLAQSIIELLRAGGVEAGAEE
TRGYDHGVFVPLKLIYPDADIPVVQVSMRASLGVEQHMKIGMLLSDLQEK
HSDILVIGSGQATHNLRTMDPSYPPGVGRKEEDGFVKWLKQTMIDEDLRP
EDRKVLLRLWEEKAPHARLAHPREEHLLPLHVVAGYVGFSPGKTVYDRFF
LGTMSLLSFVFPHKSITSSSDSVLPHSSEV*
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mRNA from alignment at C-tenellus_contig117:7535..10340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig117.5.1 ID=mRNA_C-tenellus_contig117.5.1|Name=mRNA_C-tenellus_contig117.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2806bp|location=Sequence derived from alignment at C-tenellus_contig117:7535..10340+ (Choristocarpus tenellus KU2346)
CTGTGCACGCATTTGACGCTACCAAGAAAAAATGTCAGGAGTTTCTACTA GACCTCCTGCTTTGTTCCTTTCGCATGGTGGAGGTGGGTTCGAGCTTTGT TGGAGACTGGTTGTCAAGCCCGTATAGCGGATCAAGAACATTGTTCAAGT GCTTCTGGATGTTTACCTCTTTTGACATGAACTTTTCTGGAATCATAGCC TTTCCTTTCGCCAGATATCATTTTGTTGATTTTGAAGAATAAGCAATTCT GTCGCTGTTCGTGACCTTAAATTTGTCCTGTGGTCACTCACTTAGGGCCA TGTTTCTTTATGGACGACGACAAAGGAACGTTCAGATACCTCAACTGCAA TAGTGAACCTGCCGAATGGTTTCGTTCGCTTGCCAAGGGATGGGAGAAGC CGTCGGCGATCGTAGTCATCTCGGCCCATTGGGAGGAGCGAGACCAAGTT CTCGTCACCTCTTCCTCGAAGCACCCCCTACTCTTCGACTACTATGGTTT TCCGGACTACACCTATGAGATCGAGTATCCGTGCCCTGGAGATCCGACCC TTGCCCAGAGTATCATTGAGCTTCTCCGAGCCGGTGGTGTGGAGGCAGGA GCGGAGGAGACCCGGGGATACGATCACGGGGTGTTTGTCCCACTCAAGTT GATATACCCCGACGCTGATATTCCCGTTGTTCAGGTGCGATCCTATGCAT TAATTGTCATGACAACGTCCATAGCCTACCAACGCCCGTTTCTCCAGTCT CGTTTGATTTGACCGGATGGGAGGTTTGATGTGGTCGTATAACCTTGCAC GATTGTACAGTTCTACCGAGTTTGTAGACCTATTTTATTTGGTGTGATTT AGAGGAATCAACGAGCATATTATTGGAGAGATAAATACTCCTGTGGTACT GGATAAACTTCCTCATTGTTTTTACAATGTCGCTTTTCCTTACTCCGGTT GAAACCACGCAGGTTTCAATGCGAGCTAGCCTGGGCGTGGAGCAGCACAT GAAGATAGGGATGTTGCTGTCTGACTTACAGGAGAAACACAGTGATATTC TTGTCATTGGCAGCGGTCAGGTATGTATCTTTGGATCTTTGTATTTATGA GTTTGTTACCTAGAAGATTGTGCCGATTCAGCCGTTTTGTAGCTCGCGGT GTGCTTAGGAGCTGACACCTCTAACTTTCCTGGTCGTTACAAATGAAAAT GGGTAAGCTTTTTAAGTTGAAGTTTATAGAGTCTAGGTAGAGCTCCGCCT CTGTGTATGTTGAAGGTATGCAAGAGATTACCGACATGGGATTGATGATG CTGTATACATCCAAGTGACTAAAAGTTCTTAACAGGGTACCAAATATAGA ATATTCGGCATTAATGGGATGAGCGATAGACCTGCTGATTGCAAGTCACC CCTGCTGACCCTTCACAAGCAAAAAAGCCCCCCCGACTGTTACCAAGCAT TTTGTATTTTTGGGACACTTGTATTTGATTGCCGTTTCCTGTATAGAGAG GGGATTGTGGGGAAGTTCAAAGCAATTGTAGTGTTGGGGGTTGGATGTTG GGCTAGACCTGAACTTGACACCACAGCCCAGTCTCCACCTTTCATACTCT TCCCGTTCAGAATACAGAGGTTAAGCCCTATCCGCAAGGAAAGTTGAATC CTCTCCCTTGTATTATAGAGCTGTTGCACACACAGGATGTGCAGCATCTT CCCACATACAGAAGTTAAGCACTATCCACAAATAAGCTTGAATCCTCTCT CATTGTATCGTAGAGCATCTTCCCACATCACTTACAAAAATGTGACCCAC CCTTAAATTGTGGGTAGCACCTTACTGAGCGCTGGGCAGTGACTATGTGG CACCTCCAACCACTCCTGAATGTTGCTGATATCTGATGAGAAGCAGGGAA TAACTTAGGTTGCAACCACTTCCATTATTTATCTAACATGTTTGACACCA CCTGCAGCTAAAACCTTTGCTGCTTTCACCTGATCAATCATAGGCTACTC ACAACTTGAGGACGATGGATCCATCATACCCTCCTGGTGTCGGTCGAAAG GAAGAGGACGGATTTGTCAAGTGGCTCAAACAAACAATGATAGATGAGGA TCTCCGTCCTGAGGATAGAAAGGTCCTCCTGCGGTTGTGGGAAGAGAAAG CACCTCATGCCCGACTAGCTCATCCCCGTGAAGAGCACCTTCTACCACTG CATGTGGTGGCAGGCTATGTTGGATTTTCACCTGGGAAAACTGTGTACGA TCGCTTCTTCTTAGGTACAATGTCTCTCCTCTCGTTTGTGTTCCCACACA AATCCATAACCTCATCTTCAGATTCAGTGCTGCCACATTCTAGTGAGGTG TGATGATTGCCTATATCTGCATGACCTTTTAGAAGTCTGAGGGGGTAATT CTGTACATACTCACATAAATTGTATACTACTTGTAAGTATGGCCCTACCT CATGTATGTTTCATAACCGACCTTAAAAGTGTTGGATAAACACCTTAAGG GGTGTTTGTTCATACACACTGTGGGTGGGATAAGGATGAGACCAGATTTT CCATATTTGATTTCCTTGTGGATGGAATGAGTATTTCTCTCCTGCATGAA GTTTACCTTGACCTTACATCCTGTTTTCTAGAAGGTACATGTTAACCCTC TGCCCTTAAACTCTTCAAGTTTTTGTTGACAGTCAACAAATAAGAAACTG GTAAATGCATAAATTTTGTATTTGAACACACTCTAATAATGCAACCGTAT TTTAGCATGGTTTTCTCACAAGTATGAAAGACTTGAATGAATAAAGCTTA CCATCC
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Coding sequence (CDS) from alignment at C-tenellus_contig117:7535..10340+

>mRNA_C-tenellus_contig117.5.1 ID=mRNA_C-tenellus_contig117.5.1|Name=mRNA_C-tenellus_contig117.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=843bp|location=Sequence derived from alignment at C-tenellus_contig117:7535..10340+ (Choristocarpus tenellus KU2346)
ATGGACGACGACAAAGGAACGTTCAGATACCTCAACTGCAATAGTGAACC
TGCCGAATGGTTTCGTTCGCTTGCCAAGGGATGGGAGAAGCCGTCGGCGA
TCGTAGTCATCTCGGCCCATTGGGAGGAGCGAGACCAAGTTCTCGTCACC
TCTTCCTCGAAGCACCCCCTACTCTTCGACTACTATGGTTTTCCGGACTA
CACCTATGAGATCGAGTATCCGTGCCCTGGAGATCCGACCCTTGCCCAGA
GTATCATTGAGCTTCTCCGAGCCGGTGGTGTGGAGGCAGGAGCGGAGGAG
ACCCGGGGATACGATCACGGGGTGTTTGTCCCACTCAAGTTGATATACCC
CGACGCTGATATTCCCGTTGTTCAGGTTTCAATGCGAGCTAGCCTGGGCG
TGGAGCAGCACATGAAGATAGGGATGTTGCTGTCTGACTTACAGGAGAAA
CACAGTGATATTCTTGTCATTGGCAGCGGTCAGGCTACTCACAACTTGAG
GACGATGGATCCATCATACCCTCCTGGTGTCGGTCGAAAGGAAGAGGACG
GATTTGTCAAGTGGCTCAAACAAACAATGATAGATGAGGATCTCCGTCCT
GAGGATAGAAAGGTCCTCCTGCGGTTGTGGGAAGAGAAAGCACCTCATGC
CCGACTAGCTCATCCCCGTGAAGAGCACCTTCTACCACTGCATGTGGTGG
CAGGCTATGTTGGATTTTCACCTGGGAAAACTGTGTACGATCGCTTCTTC
TTAGGTACAATGTCTCTCCTCTCGTTTGTGTTCCCACACAAATCCATAAC
CTCATCTTCAGATTCAGTGCTGCCACATTCTAGTGAGGTGTGA
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