mRNA_C-tenellus_contig117.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig117.2.1
Unique NamemRNA_C-tenellus_contig117.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig117.2.1 vs. uniprot
Match: A0A6H5K4M4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4M4_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 8.910e-57
Identity = 117/246 (47.56%), Postives = 155/246 (63.01%), Query Frame = 3 
Query:  822 LVEQIIRRIKPDVVMVELDQSRVAGFENEAKAGEA---------------RKKTDFVRTFFQDFFNPEVSFTERVNGFAAVIVGKTISKMYESMDKLGFVSGQEFTVAIREAKVLRAKILLGDRDVNVTLRRLTEALRVTDMNRLGEMQIPELESSMQGITTGEADKINSAVEIIKQRQTMRKLSALLQEGAPEVYNAMLGERDVYMANSLINSGGKR-TVGVVGLAHLDGIEKNLIKNGWKRLPC 1511
            LVE +IR+IKP VVMVELD  RV  F   +K GE                R +  F   FF+   +P+V   +R+  F A  +GK ISKMYESMD+ G  SGQEFT+AI EA+   AK+LLGDRDV +TLRRL+EALR  D+ ++ +    E    ++ +     + INS+++I+K R+TMRK+    +E APE+YNAM+GERD  MA +L+   GK+ TV VVGLAH+DGIE  L+ NGWK   C
Sbjct:  152 LVENVIRQIKPQVVMVELDAQRVGSFMKPSKQGEKTLADGTGKEIAPPAERTRNPFFGAFFKQLLDPKVPVNDRITDFFAAALGKAISKMYESMDQKGLSSGQEFTIAINEARACGAKLLLGDRDVRITLRRLSEALRKIDLQKISQSGQMETGLGLEALDGSSVESINSSLDILKNRETMRKVIGFYKEEAPELYNAMIGERDKVMAVNLMGLDGKQVTVAVVGLAHVDGIEGILMANGWKCQRC 397
[Close]
BLAST of mRNA_C-tenellus_contig117.2.1 vs. uniprot
Match: W7TUP6_9STRA (Pheromone shutdown, TraB n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUP6_9STRA)

HSP 1 Score: 174 bits (441), Expect = 4.100e-43
Identity = 138/426 (32.39%), Postives = 204/426 (47.89%), Query Frame = 3 
Query:  291 PDILCDDAVLHIRDSRSGQEAWMVGTAHISNSSAQV----------DSMIFGGFVHNDGRLALPTSQASQISTSSISRIAIRRFLRWT*LLHVALLGGSSSGSFELDR*CRCSGS*WVLPRELTREGAATDKAVLTRMFKDRQRGNTHSYYFIINAF*LFDMISLRKPCRQASH*QYVNRNTR*DLQLVEQIIRRIKPDVVMVELDQSRVAGFENEAKAGEARKKTDFVRTFFQDFFNPEVSFTERVNGFAAVIVGKTISKMYESMDKLGFVSGQEFTVAIREAKVLRAKILLGDRDVNVTLRRLTEALRVTDMNRLGEMQIP-------ELESSMQGITTGE-ADKINSAVEIIKQRQTMRKLSALLQEGAPEVYNAMLGERDVYMANSLINSGGKRTVGVVGLAHLDGIEKNLIKNGWKRLPCK 1514
            P  LCDDA+ H+R+ ++GQ+ +M+GTAHISN+SA +           +++        GRLA  TS +     SS+ R    R         V ++  SSS S +            V P      G A+                                 +L+ P    S   ++++                                 + E KAG       F+R    +       F ER+ G  A++VG+ IS +Y  +DK+GFVSGQEF VAI E + + A +LLGD+DV VTLRRL++AL  +++ ++ EM+ P       ELE+  +GI  G+ A  I+ A+E +K+R ++R L A LQ+  PEVY AM+ ERD YM  SL+  G +  VGVVG+ HLDGIE+NL + G+ R+PC+
Sbjct:  118 PSGLCDDAISHLRNPKTGQDIYMIGTAHISNASALLVRSTIRELRPQTVMLELDASRIGRLAKNTSNSIP-KPSSMGRSEPSR--------RVVIVASSSSDSPD------------VPPATFVIPGPAS--------------------------------TALQPP---PSDPGFLSK---------------------------------QEEGKAG-------FLRAALGELTRVGSGFRERLVGLGAMVVGQVISGLYRGLDKMGFVSGQEFIVAIDEGRKVGADLLLGDQDVQVTLRRLSDALSRSELGKVREMESPTRSPAARELEA--RGIRMGDNAADISVAMEALKERSSVRTLMASLQQELPEVYKAMIEERDAYMTASLLGCGSQTIVGVVGIGHLDGIERNLGREGFVRVPCR 445
[Close]
BLAST of mRNA_C-tenellus_contig117.2.1 vs. uniprot
Match: A0A7S4LCG8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LCG8_9EUGL)

HSP 1 Score: 169 bits (427), Expect = 1.160e-41
Identity = 95/240 (39.58%), Postives = 151/240 (62.92%), Query Frame = 3 
Query:  819 QLVEQIIRRIKPDVVMVELDQSRV-----AGFENEAKAGEARKKTDFVRTFFQDFFNPEVSFTERVNGFAAVIVGKTISKMYESMDKLGFVSGQEFTVAIREAKVLRAKILLGDRDVNVTLRRLTEALRVTDMNRL----GEMQIPELESSMQGITTGEADKINSAVEIIKQRQTMRKLSALLQEGAPEVYNAMLGERDVYMANSLINSGGKRTVGVVGLAHLDGIEKNLIKNGWKRLPC 1511
            +LV+ ++R ++P+ VM+ELD  R+          E   G +R          +D F     F  R+    A ++G  ++  Y +++++GF SGQEF VA++EAK L A I+LGD+ +++TL+RL +AL V+D++++      M   E+E + Q + +G   ++  AVE++KQR  +R+L A++++  PEVY A+L ERD YMANSL NS G+R VGVVG+AH+DGIEK L   G++R+ C
Sbjct:  176 ELVKNVVREVRPETVMLELDAGRIKMAPDGSGPQEGVVG-SRASLSLAERARRDLFTGSKPFGVRLQKLQADLIGGLLAAFYSALNQMGFDSGQEFIVALQEAKALNANIVLGDQPIDITLQRLQQALAVSDLSKMFSPPDSMNEVEIEVA-QALNSGSKAELAGAVELLKQRSQVRELVAVMKQQLPEVYQALLAERDSYMANSLRNSPGQRIVGVVGIAHMDGIEKKL---GYERINC 410
[Close]
BLAST of mRNA_C-tenellus_contig117.2.1 vs. uniprot
Match: A0A7S2Y0R5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0R5_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.950e-39
Identity = 88/240 (36.67%), Postives = 143/240 (59.58%), Query Frame = 3 
Query:  822 LVEQIIRRIKPDVVMVELDQSRVA------GFENEAKAGEARKKTDFVRTFFQDFFNPEVS--FTERVNGFAAVIVGKTISKMYESMDKLGFVSGQEFTVAIREAKVLRAKILLGDRDVNVTLRRLTEALRVTDMNRLGEMQIPELESSMQGITTGEADKINSAVEIIKQRQTMRKLSALLQEGAPEVYNAMLGERDVYMANSL--INSGGKRTVGVVGLAHLDGIEKNLIKNGWKRLPC 1511
            LV+++I+++KP  VM+ELD SRV           + ++ +A  K       F + F+   S   +ER+  F A +VG  IS +Y+S+DK GF SG+EF VAI EA  + A ++LGDR    TL+RL +A+ V+D+++     +  +E+++  +   +   +   VEI+K+R+ ++ +  LL +  PE+Y A++ ERD YMA  L  ++   K    VVG+AH DGIE+ LI NGW+++ C
Sbjct:   94 LVKEVIQQVKPGYVMLELDPSRVKLAKRNQDANTQFESADAGSKKGMNTGLFSEAFSVTQSTPISERLVSFTAGLVGTVISTLYKSLDKRGFSSGEEFKVAIEEAGKINASVILGDRPAKETLKRLAQAISVSDLSQKSSGDMSSIEAALASLNYADNQALAETVEILKERENVKTMMKLLSDQVPELYKALVTERDEYMAAGLNKLSDAQKPVCAVVGIAHEDGIEQRLINNGWEKVSC 333
[Close]
BLAST of mRNA_C-tenellus_contig117.2.1 vs. uniprot
Match: A0A7S4D5B9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5B9_HETAK)

HSP 1 Score: 154 bits (389), Expect = 5.790e-39
Identity = 83/167 (49.70%), Postives = 113/167 (67.66%), Query Frame = 3 
Query:  981 VSFTERVNGFAAVIVGKTISKMYESMDKLGFVSGQEFTVAIREAKVLRAKILLGDRDVNVTLRRLTEALRVTDMNRLGEMQIPELESSMQGITTGEADKINSAVEIIKQRQTMRKLSALLQEGAPEVYNAMLGERDVYMANSLINSGGKRTVGVVGLAHLDGIEKNL 1481
            +S  ER+   AA  +G ++S MY+ +DK+GF SG EF VAI E + + AKILLGDR+V  TLRRLTEAL VTD+ ++ + + P+    ++     + + + + VE++KQRQT+R L A L+E APEVYNAM+ ERD YMA  L    GKR V VVG+ H+DGIE  L
Sbjct:   22 MSLKERLLNKAAEQIGSSLSNMYKDLDKMGFQSGDEFKVAIIEGQNIGAKILLGDRNVKETLRRLTEALSVTDLRKVQDFKPPDEALFLKDAKMDDKESLTATVELLKQRQTVRVLMASLREAAPEVYNAMIRERDEYMAKMLRYCDGKRVVAVVGMGHMDGIESFL 188
[Close]
BLAST of mRNA_C-tenellus_contig117.2.1 vs. uniprot
Match: A0A7S2WTZ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTZ5_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.950e-38
Identity = 80/174 (45.98%), Postives = 116/174 (66.67%), Query Frame = 3 
Query: 1002 NGFAAVIVGKTISKMYESMDKLGFVSGQEFTVAIREAKVLRAKILLGDRDVNVTLRRLTEALRVTDMNRLGEMQIPE--LESSMQGITTGEADKINSAVEIIKQRQTMRKLSALLQEGAPEVYNAMLGERDVYMANSLINSGGKRTVGVVGLAHLDGIEKNLIKNGWKRL--PC 1511
            N F   ++G+ +  +Y SMD++GF SG+EF VA+REA  L   +LL DRDV VTLRRL +AL+ ++++ +G  Q+P   +   +  +    AD+I   VE+IK+R T+R+L+  L+  AP +Y+AM+GERD YMA SL+ +    TVGVVG+AH+DGIE  L   GWK+   PC
Sbjct:   18 NKFLPDLLGQALKSLYASMDRMGFSSGEEFAVALREASQLGVPVLLADRDVRVTLRRLADALQNSNLDAIGTSQLPSDPVLQKVDSVDLSNADQIRDMVELIKERDTVRQLTTELRREAPLIYDAMIGERDRYMAQSLLGTSAAVTVGVVGMAHMDGIEAQL---GWKKKQQPC 188
[Close]
BLAST of mRNA_C-tenellus_contig117.2.1 vs. uniprot
Match: A0A7S0CDZ2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDZ2_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.020e-32
Identity = 93/240 (38.75%), Postives = 134/240 (55.83%), Query Frame = 3 
Query:  819 QLVEQIIRRIKPDVVMVELDQSRVAG-FENEAKAGEARKKTDFVRTFFQDFFNPEVSFTERVNGFAAVIVGKTISKMYESMDKLGFVSGQEFTVAIREAKVLRAKILLGDRDVNVTLRRLTEALRVTDMNRL--GEMQIPELE---------SSMQGITTGEADKINSAVEIIKQRQTMRKLSALLQEGAPEVYNAMLGERDVYMANSLINSGGK--RTVGVVGLAHLDGIEKNLIKNGW 1496
            QL  +++R   PD V VELD  RV   F  E++A +                +P   F E +    A +VGKTIS MY+ ++  G  +G+EF+VA+ E   L A I+LGDRDV+VTL+RLT A+  T+  +L   + QI E            + Q I +  +D++ + VEI+K    ++ L A L+  APE+Y AM+ ERD YMA  L     K   TV V+GLAH+DG+E+NL+ +GW
Sbjct:  152 QLAGRVVRETSPDAVFVELDAKRVDRVFLPESEANQQLVSNAPTAVQSNTKKSP-FGFIETIKKAPAALVGKTISNMYKKLESDGLNAGEEFSVAVNEGLKLNAAIVLGDRDVDVTLQRLTTAISKTNFKQLLSADSQIEEQMINTLPTETIDTFQKIGSLSSDEMRTMVEILKTNDNVKALMANLKRAAPEIYGAMVAERDEYMARGLNELPNKYLTTVAVMGLAHIDGVERNLMASGW 390
[Close]
BLAST of mRNA_C-tenellus_contig117.2.1 vs. uniprot
Match: L1JJY4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JJY4_GUITC)

HSP 1 Score: 134 bits (338), Expect = 3.570e-32
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 3 
Query:  864 MVELDQSRVAGFENEAKAGEARKKTDFVRTFFQDFFNPEVSFTERVNGFAAVIVGKTISKMYESMDKLGFVSGQEFTVAIREAKVLRAKILLGDRDVNVTLRRLTEALRVTDMNRLGEMQIPELESSMQGITTGEADKINSAVEIIKQRQTMRKLSALLQEGAPEVYNAMLGERDVYMANSLINSGGKRTVGVVGLAHLDGIEKNL 1481
            MVELD+SR+        AG            +  +   ++S  ++++   A I+G  I  +Y+ ++K+GF SG+EF  AI EAK L A ++LGDR VN TL RL +++  T               S      G+   I + +E++K+R+T+R +   L+E  PEVY A++GERD YMANSL+ + G+ TV VVG+AH+DGIE +L
Sbjct:    1 MVELDESRLR-----RSAGNREGPKSVWDVIWGQWKRSDLSLGDKIHNVEAGIIGVAIGSLYQKLNKMGFSSGKEFATAISEAKALNANLVLGDRPVNETLIRLQQSIDKTGW-------------SQDKGDKGDNAAIANTIEMLKERRTVRGIMQTLKENLPEVYTALIGERDQYMANSLLKANGRTTVAVVGMAHMDGIEAHL 188
[Close]
BLAST of mRNA_C-tenellus_contig117.2.1 vs. uniprot
Match: A0A6U5EEF9_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5EEF9_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.350e-30
Identity = 95/282 (33.69%), Postives = 138/282 (48.94%), Query Frame = 3 
Query:  822 LVEQIIRRIKPDVVMVELDQSRVAGFENEAKAGEARKKT------------------DFVRTFFQDFFNPEVSFTERVNGFAAV------------------IVGKTISKMYESMDKLGFVSGQEFTVAIREAKVLRAKILLGDRDVNVTLRRLTEALRVTDMNRLGEMQIPE--LESSM--QGITTGEADK--INSAVEIIKQRQTMRKLSALLQEGAPEVYNAMLGERDVYMANSL-------INSGGKRTVGVVGLAHLDGIEKNLIKNGWKRLPCK*C 1520
            LV  IIR ++P+ V VELD  RV  F  +  +G+   +T                  D V              TE++  F+A+                   VG  +  MY  +DK+GF SG+EF +AI     + +KI+LGDRDV VTL RL+EAL + D N+L  M I +  +   M      +G+  K  ++  VE +K R+ +R +   L++  PE+Y A++ ERD YMAN L        + G K  V V+G+AHLDG+E+ L   GWK +P   C
Sbjct:  120 LVGDIIRTVRPETVFVELDAKRVGRFLEKDGSGKQGDRTLAPTPVEPTSSRGWGVVRDPVSAPQAGTSVAPAPSTEKLGIFSAIRTGLGKKIASLYRAAEAAAVGSALQSMYSQLDKIGFSSGEEFKMAIETGSEIGSKIVLGDRDVQVTLNRLSEALEIVDWNKLTTMTIDDSIMPKGMGQNSAASGDISKEDLSQVVEALKTRENVRSIMNSLKKELPELYTALVAERDEYMANGLDIIGKNGASRGMKNAVAVMGMAHLDGVERYLQSKGWKGVPYTLC 401
[Close]
BLAST of mRNA_C-tenellus_contig117.2.1 vs. uniprot
Match: A0A7S2P6Y4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P6Y4_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.740e-30
Identity = 96/288 (33.33%), Postives = 141/288 (48.96%), Query Frame = 3 
Query:  819 QLVEQIIRRIKPDVVMVELDQSRV--AGFENEAKAGEARK----------------------------KTDFVRTFFQDFFNPEVSFTERVNGFAAVIVGKTISKMYESMDKLGFVSGQEFTVAIREAKVLRAKILLGDRDVNVTLRRLTEALRVTDMNRLGEMQIPELESSMQG----------------ITTGEADK-INSAVEIIKQRQTMRKLSALLQEGAPEVYNAMLGERDVYMANSL------INSGG--KRTVGVVGLAHLDGIEKNLIKNGWKRL--PC 1511
            +L  +++R IKP+VV VELD  RV  AG  N     +                               K+  + T   D    ++  +  +    +  VG  +  MY  ++  GF +G EF  ++RE   + + I+LGDRDV VTL+RLT+AL  TD+ +L      E+E SM+G                +T G  D   NS VE +K ++ ++K+   L+E APE+Y AM+ ERDVYMA  L      + SG   + TV V+G+AH+DG+E  L  NGWK +  PC
Sbjct:  102 ELAGKMVREIKPNVVFVELDAKRVSRAGIGNSTSTSKTNTVASSNEGAADSTPSVTAAAVETETTLAPKSSVISTPSNDAPPRKIQISNPLVNVGSKYVGNAVKGMYTKLESEGFKAGDEFINSVREGLAIGSTIVLGDRDVEVTLKRLTQALTKTDIRKLLSSD-SEVEKSMEGLLPDQMKSNMNQPSDSVTMGVDDATFNSFVETMKAKENVKKIMGALKETAPEIYQAMVAERDVYMARGLDELGMNVKSGSSVETTVAVMGMAHVDGVENYLATNGWKDVSYPC 388
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig117.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4M4_9PHAE8.910e-5747.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TUP6_9STRA4.100e-4332.39Pheromone shutdown, TraB n=2 Tax=Monodopsidaceae T... [more]
A0A7S4LCG8_9EUGL1.160e-4139.58Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2Y0R5_9STRA3.950e-3936.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4D5B9_HETAK5.790e-3949.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2WTZ5_9STRA1.950e-3845.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0CDZ2_9STRA1.020e-3238.75Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
L1JJY4_GUITC3.570e-3237.86Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A6U5EEF9_9STRA1.350e-3033.69Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2P6Y4_9STRA2.740e-3033.33Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig117contigC-tenellus_contig117:820..7259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHB1
PFAMsTraB
Model size3597
Max annot lvl2759|Eukaryota
KEGG rclassRC00034,RC00767,RC02141,RC02755
KEGG koko:K03781
KEGG ReactionR00009,R00602,R02670
KEGG Pathwayko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014
KEGG ModuleM00532
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.1e-58
EggNOG OGsCOG1916@1|root,KOG2860@2759|Eukaryota
Ec32 ortholog descriptionPheromone shutdown, TraB
Ec32 orthologEc-03_004110.1
EC1.11.1.6
DescriptionTraB family
Cds size654
COG categoryKLT
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig117.2.1prot_C-tenellus_contig117.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig117 2900..6297 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789190.2982538-UTR-C-tenellus_contig117:819..28991680789190.2982538-UTR-C-tenellus_contig117:819..2899Choristocarpus tenellus KU2346UTRC-tenellus_contig117 820..2899 -
1680789190.3799808-UTR-C-tenellus_contig117:6297..69611680789190.3799808-UTR-C-tenellus_contig117:6297..6961Choristocarpus tenellus KU2346UTRC-tenellus_contig117 6298..6961 -
1680789190.3881526-UTR-C-tenellus_contig117:7060..72591680789190.3881526-UTR-C-tenellus_contig117:7060..7259Choristocarpus tenellus KU2346UTRC-tenellus_contig117 7061..7259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789190.3119292-CDS-C-tenellus_contig117:2899..30251680789190.3119292-CDS-C-tenellus_contig117:2899..3025Choristocarpus tenellus KU2346CDSC-tenellus_contig117 2900..3025 -
1680789190.325077-CDS-C-tenellus_contig117:3855..39511680789190.325077-CDS-C-tenellus_contig117:3855..3951Choristocarpus tenellus KU2346CDSC-tenellus_contig117 3856..3951 -
1680789190.3371813-CDS-C-tenellus_contig117:4235..43731680789190.3371813-CDS-C-tenellus_contig117:4235..4373Choristocarpus tenellus KU2346CDSC-tenellus_contig117 4236..4373 -
1680789190.3476837-CDS-C-tenellus_contig117:5384..54821680789190.3476837-CDS-C-tenellus_contig117:5384..5482Choristocarpus tenellus KU2346CDSC-tenellus_contig117 5385..5482 -
1680789190.3577003-CDS-C-tenellus_contig117:5812..59571680789190.3577003-CDS-C-tenellus_contig117:5812..5957Choristocarpus tenellus KU2346CDSC-tenellus_contig117 5813..5957 -
1680789190.3665347-CDS-C-tenellus_contig117:6246..62971680789190.3665347-CDS-C-tenellus_contig117:6246..6297Choristocarpus tenellus KU2346CDSC-tenellus_contig117 6247..6297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig117.2.1

>prot_C-tenellus_contig117.2.1 ID=prot_C-tenellus_contig117.2.1|Name=mRNA_C-tenellus_contig117.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=218bp
MVELDQSRVAGFENEAKAGEARKKTDFVRTFFQDFFNPEVSFTERVNGFA
AVIVGKTISKMYESMDKLGFVSGQEFTVAIREAKVLRAKILLGDRDVNVT
LRRLTEALRVTDMNRLGEMQIPELESSMQGITTGEADKINSAVEIIKQRQ
TMRKLSALLQEGAPEVYNAMLGERDVYMANSLINSGGKRTVGVVGLAHLD
GIEKNLIKNGWKRLPCK*
back to top

mRNA from alignment at C-tenellus_contig117:820..7259-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig117.2.1 ID=mRNA_C-tenellus_contig117.2.1|Name=mRNA_C-tenellus_contig117.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=6440bp|location=Sequence derived from alignment at C-tenellus_contig117:820..7259- (Choristocarpus tenellus KU2346)
GCCGACGCTCAGTAGATCAAACCTCGTTGGGACTTGCAGTCGGAAAGGTC
TCTCAATGGGAATTGACTCGCAGTTGGACAGACGGTGAGGTCCCATAGAT
ACAGTTCTTGATCAAACCCTAAATTCTGGTTGGTATGCCCTTGAATCCTA
TGAGCCGAGGAGTTCCTGTCGCAGCAAGGGTGGGATCAAATACGGCCAGG
TAGGAATAGAATAAGGTAGGTGCAACTTGCTGTTCACACTACCTCTCTTA
TCACATATGTGAACGACCTCCTCGCTGTCCGATTACCAATATATACAGAG
AGCTTATTCAACAGACGGGCGAACTGTTCATGACCTGGGCTACTGCTTGG
GCGGTAGCTCCTCGAGTGGCAGGCGCTGTTGTCAGTCCACCAGATATTCT
GTGTGACGATGCAGTCCTTCATATACGGGACTCAAGATCTGGACAGGAGG
CGTGGATGGTAGGGACAGCACATATTTCCAACTCCAGCGCTCAGGTAGAC
TCTATGATTTTTGGCGGATTTGTGCACAATGACGGTAGACTCGCCCTCCC
CACCTCGCAGGCTAGCCAAATTTCAACCAGCTCAATCTCAAGGATTGCCA
TAAGACGATTCCTTAGATGGACTTGACTCTTGCATGTGGCATTGCTAGGT
GGAAGTAGTTCAGGCAGTTTCGAGCTCGACCGTTGATGCAGGTGTAGTGG
TAGCTAGTGGGTCCTACCTCGAGAGCTTACAAGGGAGGGAGCAGCCACTG
ACAAGGCGGTGTTGACTAGAATGTTCAAGGACCGCCAGCGTGGAAATACC
CATTCGTACTACTTCATTATCAATGCCTTTTGATTGTTTGACATGATTTC
ACTCAGAAAACCTTGCCGTCAAGCCTCCCATTGACAATATGTAAATCGAA
ATACGCGATGAGACTTGCAGCTTGTGGAGCAGATTATCCGTCGCATCAAA
CCAGACGTGGTCATGGTGGAGCTTGACCAAAGCAGGGTGGCTGGATTTGA
GAATGAGGCCAAGGTGGGTAAGCACATGTCTCTAGAAGAGAGTTTGCGGA
AATATGCAAGAGATATTGTGCACAGGAGATATGCTGTGTTACCAACGAAA
AATATATTGAATCAATGGAACTGGAGGAAGCTCTTCCTCGTACTCTCCCT
CCTATGCAGTTTGAACAATCCTTGTAAAACGCTGGGCTATTGCAGTGCTC
TTTAGTTGTATAAATGTTTGCAAAAATAAGGAGCTGAAGCACAATTCCAA
CAGCTCCCGGCTCGGTGGGTGGGGGTCGGCGGTAATCCAACTGACTGCAC
AGGCAGGTGAAGCTCGCAAAAAGACAGACTTTGTCAGAACCTTTTTTCAA
GACTTCTTCAACCCTGAAGTGTCCTTCACTGAACGGGTCAACGGTTTTGC
TGCCGTGATTGTTGGCAAGACGATATCGAAGATGTACGAGTCAATGGGTG
AGGATTCGGCAGGTTTAAAGATGGAAGAGATGGAAATGTATGCACTTGTG
TACTCAGGAAGGAAGAGTTGATTTGATTTCTCCAGCATATTGTGATAACG
AGTGTATCCTTTCTGTCCTGTTTCTATTTTGTGTGTTGTTCGGGCTTGTT
TGAGAGGTGCTGATATATGAGTTACTAGATGTACATTTCAACCAGCAACG
TGCAGTGTGAACATTACCTTTCCCACTGGTGTCCCTTCCCCATCCCAAGT
TCAGTCCACAATTCCCCTCCCCCACAAATGGCCTTACCTACATTTGCATT
CTTTGGTAAAACATTATGTTTCTGCAGATAAGCTAGGGTTTGTGTCTGGA
CAGGAATTTACAGTGGCCATCCGTGAGGCCAAAGTCTTGAGGGCAAAAAT
TCTTCTGGGTGACAGGGACGTCAACGTGAGTGAAATGTATCCATTAATGA
AATGTAGAACATGTGTGGTGTGTCGAGACTATATGGGACCGTGCTTCAAT
GCAGATTGTAGAGATCTACCTCCCAGTACCTGCATTCAACTCATGTTTTT
TGTTGCAACAATTAGTCTGGTGGTGAGGGTATACCCTCCCTTGAACACTA
GTGCTTGCACTGAAGGAGGGAGTGATCTTAGTAGGCTTTTTTTTTGGAAA
CTAAAATGATGTAAATCACCTTTTAAATAATGAAGTGGTACCATTAGAGG
CACCAAACAGCTCCTGGGTGGTTGATTGCCTTTGCAAACTTGACTCGATC
CAACAAAACCACACCTATGAGCAAATTTGAGTCCACTGAGTCCACTGATG
CCCAAGGTTTTGTTCTGCTGTACTTCTTAAAGGCCTCAATGTGATACCAT
GATATTCCATTCCCCCCAGCCTTGGGTTCTCAACTCCCAGATCTTTCCTT
CACCCTAAAGTACATGGAACCTGATCCCGGCCGTATTGCAACGTGGTGGC
AAAGGTTGATTGTTGACCCTTGAAACATTCTCATCATTGTTGCCCTGAAC
AATCACCTTGCCGGACTGTGGGGTATCATTTCTCCACTGGACTGCATGTA
TCACACAATGGCACAACCCTATTTTATGTCACTCAGAAATTGCTCATGGA
GGAATGTACTGATGGCATCTCTGAACGCGCAATGTGTTGATTGGAGCAAG
TCTCTTCGGTGCATACATATAGCTGCTGCTTCTCTTATCCTCTGCCTCGC
TGATCTTTTGGTTACAGATTTGTCTTTCATCCGCAGTGCTTGCAGTGATG
GTAGCCTGAATAGAACCAACCAACATCCACGTTTTCCTGCATTGATTTAC
TTGATGACAAACGACCTCCACTCTTACAGCCCTGTGAAATGCGGCACTGG
CTTTCTACCACCATTCTTTTTTATCTGCTTTGCCTCAAATCCTTAAAACC
TGAAAGCTCCAAAATGTCCTCTCTCCTGTCAACAAGGTAACTCTTCGGCG
GCTGACAGAGGCGCTTCGTGTAACAGATATGAACCGCCTGGGTGAGATGC
AAATCCCTGAGCTGGAGTCGTCCATGCAAGGCATCACCACCGGAGAGGCT
GACAAGATCAACAGCGCCGTCGAGGTGAATATGAAATCCACATGCTGTTC
CAGTGACTGGATTTGTTTGTTTCTTGAAGACCCTGTACAATGACACAGAA
GCGTGCCTCACGCTTTAATCCATCACAGAAAAATAAATAGCTCTGACCAT
TGGTCTCTTTTTATTGTTGTAAGCAACATCTAGTGTGGGCGTGGATAGAG
AATGGATGTGGGTGGGAATTGATGTACTTTCCCAGCGAGTCCCTTACCCC
CGCCTCCTTTTTTTGACCTCGCTTACATAGATTATTGCTTCCCCCTTCAC
TACACCAGATCATTAAACAACGACAAACAATGCGAAAGCTGTCTGCACTT
CTGCAAGAGGGAGCACCAGAGGTCTACAACGCCATGCTTGGAGAACGGGA
TGTGGTGAGCAAAGAAGCATGAATCCCAAAGGCCGTCCTTCAAGGATTCC
AACCCCGTGGTTTCTACTTTCTGTGTTGTCTTCATTTGCAGTACCTTTAC
AGTACAGGACTATTGTCATATGCCAGTTGCAAATCCCTGAAGGCGGAAAA
TAGGCCAAAATTGCAGAAGAAACACTGGGGTGAATGCGCCTCTCAAGGAA
GAGAGTGTTCACTTTAGTGCTTGTGCAGTGTGGTTGGTCTCCGTTGAGGA
GAGTTGCTTGCTCAATGCTGTTCTTGAAGTGCTGCACCAGATGTCACCTA
CCACTCCACTGAGCTGTTGCACCTCGTCCCATATGCAGTACAGCCCACCA
AGACTCACTCGTGACCACTGTGTTTCCAGGGCGCTTGCTGTTTTATTCTA
TCCCCTTCCCCTGTCACCGCAGAGGAGCAACCGACCTGCTTGTCCTCGCT
TGCTTGACTGATATCTCCATCGATCCTCTGATGAGAGACCAATCGTCATT
TGCTGCGGCCGTAGGGATTTTCCCAGTATCTTGTGAAGTGACCTTGTCTG
CATTGGTACCTATTTCTATGCGTGGTATATACATATCGCATGATCCCTTT
ACCAGGTATGGTATTGTATTAGCCACCTCCTAGTTGCTACTGGTGTTGAC
TCATTGTGGACTCGTTGCCTGCTGGAATCTGATGAGATTGATCCTCCAAC
ATAGTTGGAAGTACTTGTGTAGCTGTTGCTATGGTGCCCTTGCACCATCG
AGTTATCTCAACCCTTCTACATTCACTTACACATATTCAACACACCCTTA
TTGGTTCCCCTATGTCTATCCTCCACTTGAACAGTACATGGCAAATAGCC
TGATCAACTCTGGGGGCAAACGTACTGTAGGGGTGGTGGGGCTTGCCCAC
CTGGATGGAATCGAGAAGAACCTGATCAAGAATGGATGGAAAAGATTACC
CTGCAAGTGATGCTTTTTGATATGTTTGAAATGCCAGGTAGAAACATTAT
TCCGTCATCACAATATTTTTCAAAGGATTGCACCTTCCCGGCTGTGACTA
GGTTATGGATGTAACCTACAAGCAATTTTGTGGCCTTCATACGCATGAGT
CGTTTTCAAATTCACTCATGAAGTGGTCGTTTTCCTCCTGCACGCCTAAT
GTCCCATGATCATCACTTGTGTAGCCCTTCCATGCACTGCACTATCCAAT
TTTGTTTTGTCTTGAGCTCCACGATTAATATTAAATGGTAAATTTTTGGA
TGGAAGTATGAAACTGTTATCATACAAACAAAGGGTTGATACGGAAAGAT
GCAGAGTGAAGGAATCATGTTGACTCAATGTGACAAAATGGGTTAAGCTG
ATTGGTGTAAGTTCTGCACTAGTTGGATCTACCAAGAAAGAAAGTATATC
AGTAATGGAGTCGGCTGAGGATAATGACTTGCCGAAGATACTGATGACAA
GAGAAAGTATTGGAAATATCCCTTATGCAGCTTATGTGAGTATTGTCGGT
ATTATTCATAACATCATACTGATCCACAAGTGTATTGTTGGCAGGACTCC
TGTTTGTCCTCAAATTGTCGCACCACCAATTTTATAGCTGTATTTTACTC
GTTGGAACAAACAGAAACATGGAACAGGCAGGTGACAAAAGGAAGGTGTG
CGATGCAGGCACTGTGTTTCTGATGGGGTGAAAAAATATTTCGGTATAGA
CAGACGCGAAACCTCTTTGTGATACCTCCAAGAACATTTGATTCCTGGGT
AGGATACCTGAGCCAAACGATAGCAATTTGGTGGGTGTAGCCCCCCATTG
TGGTGTTTCTGATTTTTTTTCTGTGGCTAACCCATCCCACAATGGTGAGT
GGTGCCAAGATTTTAGGTGAGGAAAGGAGTTTGCATGGTGAGTGAATCTT
ATTGACTGATTGCCACATGTATGTGTGCAATTCTTTTGCGCTCACTGCAG
ACCTTCATACTGATTTCGTGTCTCTAAATGTTTGCATGGCTCACATGGGT
ATCAGTGCTATTTTGCAGCAGTGGTAGTTGTGTGGACAAAGTTTGAAGGA
GGGACTCCCACATTCTTCAGCAACATGCCACATTTTGAAAGCCTGGCTTA
TGGAACAGGTCATTTAGACATACATACCACTCCCAGACAGTTGAGGGTTG
CAATCTCTTCGTTTTATAGTCAATTGCTCTCTACATGAAACCTTACCCTG
ATTTGCTTTGGGAGGTACCCATTTCTAGTATTTATTTATTATTTGTTTCA
ATATAGAGCGATGTCTCGTAATCTAGAAACCTCCAAGGGAACGGTTCCAT
TTTGGATTTCCCTGTCAAGCCAAAGAAGGGGTGGAGTGAATTCACATACA
AGTGCTCCCTTCACTCAACCATGTTCGCTTCTTCTATGTTACTACACTAT
TAGAGTTTTGAGGGTCTTGGACAAGAAAATGCCATGAAAACCTATTCCGT
TTTGTTGATACGAAAGTGAAAAAGAACAAAAATGTCCCTACCCAACCTCC
CTGTACTTGCTGTATGGCTACATGACAAGAACACTAAAGAGTACTACACT
CAGCTTCATGTCCAGTACTGCACCAGGTTCTATACACGGAAACATACGTA
CCTACCGCCCCCTGATATGCAGGCAAGCACTAGTGAGAACTGGCTGTGAG
AACATTAAGGTAACTACACTCCAATTAAGTTGACTAAAGCTTGCAGGTTT
CATATCACACTACACAATGCTCATTACCCAAGAAGTAGATGTTTGGGGAG
AACTTCCAGCTGGAAATCCATAGGGGAAGATGACAGTACCAGAGAAAAAC
TCGTGGTGGTGGTGTCTCCGAGATGATATTGTTTTTTTCAGAATTCCAGC
TGAAAAGTAACGTATAGTTGAGGAGGATCTTAAGAAGTTGTGCAGGTGCG
TGGGGGATGGAGCCAAACACAACATGGATGTGTGGCGTAATAAGTATGAA
GGATGCCGAAGCAGCCACAGCATACCCTGCAAAGGGGACCAGTCACCCAA
CACCCGTCACTGCATGCTGAACTTTGGGTTGGAAATGAGG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig117:820..7259-

>mRNA_C-tenellus_contig117.2.1 ID=mRNA_C-tenellus_contig117.2.1|Name=mRNA_C-tenellus_contig117.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=654bp|location=Sequence derived from alignment at C-tenellus_contig117:820..7259- (Choristocarpus tenellus KU2346)
ATGGTGGAGCTTGACCAAAGCAGGGTGGCTGGATTTGAGAATGAGGCCAA
GGCAGGTGAAGCTCGCAAAAAGACAGACTTTGTCAGAACCTTTTTTCAAG
ACTTCTTCAACCCTGAAGTGTCCTTCACTGAACGGGTCAACGGTTTTGCT
GCCGTGATTGTTGGCAAGACGATATCGAAGATGTACGAGTCAATGGATAA
GCTAGGGTTTGTGTCTGGACAGGAATTTACAGTGGCCATCCGTGAGGCCA
AAGTCTTGAGGGCAAAAATTCTTCTGGGTGACAGGGACGTCAACGTAACT
CTTCGGCGGCTGACAGAGGCGCTTCGTGTAACAGATATGAACCGCCTGGG
TGAGATGCAAATCCCTGAGCTGGAGTCGTCCATGCAAGGCATCACCACCG
GAGAGGCTGACAAGATCAACAGCGCCGTCGAGATCATTAAACAACGACAA
ACAATGCGAAAGCTGTCTGCACTTCTGCAAGAGGGAGCACCAGAGGTCTA
CAACGCCATGCTTGGAGAACGGGATGTGTACATGGCAAATAGCCTGATCA
ACTCTGGGGGCAAACGTACTGTAGGGGTGGTGGGGCTTGCCCACCTGGAT
GGAATCGAGAAGAACCTGATCAAGAATGGATGGAAAAGATTACCCTGCAA
GTGA
back to top