mRNA_C-tenellus_contig117.11.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig117.11.2
Unique NamemRNA_C-tenellus_contig117.11.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig117.11.2 vs. uniprot
Match: D8LNZ8_ECTSI (60S ribosomal export protein NMD3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNZ8_ECTSI)

HSP 1 Score: 740 bits (1910), Expect = 2.420e-257
Identity = 392/557 (70.38%), Postives = 443/557 (79.53%), Query Frame = 2
Query:  248 PQQMMPTMLCCMCSTPIAPNPTSMCVQCIRTQVDITEGVATNLTIHECRGCKRYLRPPWVEAKLESRELMALCLRKVIGLKKVKLVDAAWIWTEPHSRRLKLKLTVQKEVGNGAVLQQVMGVTFVVRNQQCTDCAAAFTDSTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTFRDGMDFYFSERNHAARFTDFLEGVVPCRTKHSKKLVSADNHSNVFNFHYTNLVTLVPVCKDDLVLLPRRLADSLGNIPRLVIAQRISSAVNFVDPLTAQTAEVTEEKYWRSEFPSLLSSTRLTVYVVLGTEPLPDNPRPGMPAR-RRIRKARLAEVELARDDDLGKNDIRFTAVTHLGHLLRAGDSVMGYDMSAVNLPSGE--GDSLLSSMPDVILVRKVYPRNTTSGDNNSGDGVGTGGGEKRQWKLRELEKDESGMGGGGAFAG-REEAMVEQDYERFLQQLEGDKEMRRQVNIYKAGPVAVRGRRGTTSVGTGEGGEXXXXXXXXXXMVDGDEADEEEIRLEELLDELTLDDAETGPD-EVVMGSAPTLNIEA 1903
            P++ MPT+LCCMCS PI PNPTSMCV CIRTQVDITEG+ATNLT+H+CRGC+RYLRP WVE KLESRELMA+CLRK+ GLKKVKLVDA+WIWTEPHSRRLK+KLTVQKEVGNGAVLQQ M VTFVVRNQQC  CAAAFTD+TW AVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTF+DGMDFYF+E++H+ARF DFLEGVVP + KHSKKLVSADNHSN+FNFHYT LVTLVPVCKDDLVLLP+RLA+SLGNI RL +AQRI+SAV FVDPLTAQTA+VTEEKYWR EFPSLLSSTRL  YVVLGTEPLP+  RP  P R  RIRKAR+AEVELAR+ DLG+ND R TAV+HLGH+LRAGD+V+ YD+S+ NLP GE  GD L   +PDV+LVRKVYPR+   G          GG   R WKL ELEKD          +  R+EA  E+DYERFLQQLE DK+MRRQVN+YK G  A        +   G+G            M D +E DEEE+RL+ELLD +TLD+A  GPD E  +G+A     EA
Sbjct:   19 PEKQMPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKLTVQKEVGNGAVLQQAMVVTFVVRNQQCDTCAAAFTDNTWTAVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTFKDGMDFYFTEKSHSARFVDFLEGVVPTKVKHSKKLVSADNHSNIFNFHYTYLVTLVPVCKDDLVLLPKRLAESLGNISRLAVAQRITSAVQFVDPLTAQTADVTEEKYWRYEFPSLLSSTRLVPYVVLGTEPLPEKARPSAPRRGHRIRKARVAEVELARECDLGRNDDRVTAVSHLGHILRAGDTVLAYDVSSANLPEGEATGD-LKGRLPDVVLVRKVYPRHDREG----------GGKADRHWKLGELEKDGGDXXXXXXVSEKRDEAAAEKDYERFLQQLESDKDMRRQVNLYKQGLAAK------PAAADGDGA-----------MEDVEEMDEEEVRLDELLDAMTLDNANAGPDGEEDLGAASASIFEA 547          
BLAST of mRNA_C-tenellus_contig117.11.2 vs. uniprot
Match: A0A835ZB23_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB23_9STRA)

HSP 1 Score: 618 bits (1593), Expect = 6.240e-210
Identity = 322/559 (57.60%), Postives = 396/559 (70.84%), Query Frame = 2
Query:  266 TMLCCMCSTPIAPNPTSMCVQCIRTQVDITEGVATNLTIHECRGCKRYLRPPWVEAKLESRELMALCLRKVIGLKKVKLVDAAWIWTEPHSRRLKLKLTVQKEVGNGAVLQQVMGVTFVVRNQQCTDCAAAFTDSTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTFRDGMDFYFSERNHAARFTDFLEGVVPCRTKHSKKLVSADNHSNVFNFHYTNLVTLVPVCKDDLVLLPRRLADSLGNIPRLVIAQRISSAVNFVDPLTAQTAEVTEEKYWRSEFPSLLSSTRLTVYVVLGTEPLPDNPRPGMPARRRIRKARLAEVELARDDDLGKNDIRFTAVTHLGHLLRAGDSVMGYDMSAVNLPSGEGDSLLSSMPDVILVRKVYPRNTTSGDNNSGDGVGTGGGEKRQWKLRELEKDESGMGGGGAFAGREEAMVEQDYERFLQQLEGDKEMRRQVNIYKAGPVAVRGRRGTTSVGTGEGGEXXXXXXXXXXMVDGDEADEEEIRLEELLDELTLDDAETGPDE-----VVMGSAPTLNIEALELEAVQD 1927
            T+ CC+CS PI PNPT MCVQCIRTQVDITEG+A   TI +CRGC R+L+P WVEA LESRELMA+CLRKV GL +VKLVDA+W+WTE HSRRLKLKLTVQKEV NGA+LQQ + V F VRNQQCT+C A++T++TWKAVVQ+RQRVDHKRTFFYLEQLILKHNAH    N+QT +DGMDF+++ERN AAR   FLE V+PCR K+SKKL+SADNHSN +NFHYT LVT+ PVCKDDLVLLP RLA++LG   RL + QRIS+ +  VDP+TAQTA+V  + Y R EF +LLSSTRL  +VVLG EPLP    P M   RR+R+ARLAEV +AR+ DLG ND +FTA++HLGHLL+AGD+V+GYD+++ NLP      L +++PDV+LVRKVY                T G  KR W+L  LEKD          + R+    + DYERF+QQLE DKEMRRQVN++K   +    + G +                     D +E DEE+IR+EELLD++ LDD +  PD+        G AP +N  AL L+   D
Sbjct:   18 TVACCICSAPIKPNPTHMCVQCIRTQVDITEGIALKPTIFQCRGCMRWLKPNWVEATLESRELMAICLRKVSGLNRVKLVDASWVWTEAHSRRLKLKLTVQKEVQNGAILQQALIVEFTVRNQQCTECQASYTNNTWKAVVQIRQRVDHKRTFFYLEQLILKHNAHVNAINVQTHKDGMDFFYAERNQAARMLSFLESVIPCRIKNSKKLISADNHSNTYNFHYTYLVTVAPVCKDDLVLLPARLAETLGQFARLAVVQRISNGIALVDPVTAQTADVNVDHYARHEFVALLSSTRLVPFVVLGLEPLPLPSAPTMAQGRRMRRARLAEVTVARECDLGANDTQFTAISHLGHLLKAGDTVLGYDVASANLPEDHLRGLKTALPDVVLVRKVY----------------TSGAGKRAWRLEALEKDRE-----AELSKRDADAHDADYERFMQQLEADKEMRRQVNLFKDLAIGAAAKTGGSD--------------------DDNEVDEEQIRVEELLDDMRLDDPDAAPDDGDAQVFSAGEAPGVNFAALALDDEDD 535          
BLAST of mRNA_C-tenellus_contig117.11.2 vs. uniprot
Match: A0A7S2WJE1_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJE1_9STRA)

HSP 1 Score: 511 bits (1315), Expect = 8.700e-168
Identity = 274/537 (51.02%), Postives = 360/537 (67.04%), Query Frame = 2
Query:  266 TMLCCMCSTPIAPNPTSMCVQCIRTQVDITEGVATNLTIHECRGCKRYLRPPWVEAKLESRELMALCLRKVIGLKKVKLVDAAWIWTEPHSRRLKLKLTVQKEVGNGAVLQQVMGVTFVVRNQQCTDCAAAFTDSTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTFRDGMDFYFSERNHAARFTDFLEGVVPCRTKHSKKLVSADNHSNVFNFHYTNLVTLVPVCKDDLVLLPRRLADSLGNIPRLVIAQRISSAVNFVDPLTAQTAEVTEEKYWR------SEFPSLLSSTRLTVYVVLGTEPLPDNPRPGMPARRRIRKARLAEVELARDDDLGKNDIRFTAVTHLGHLLRAGDSVMGYDMSAVNLPSGEGDSLLS--SMPDVILVRKVYPRNTTSGDNNSGDGVGTGGGEKRQWKLRELEKDESGMGGGGAFAGREEAMVEQD---YERFLQQLEGDKEMRRQVNIYK--AGPVAVRGRRGTTSVGTGEGGEXXXXXXXXXXMVDGDEADEEEIRLEELLDELTL 1837
            T+LCC C  PIA NP+ MC  C+  + DITEG+AT L++H CRGC+R+LRP WV A+LES+ELMALCLRK+ GL KV LVDA WIWTEPHS RLK+K+T+QKEV  GA+LQQ   V FV+RNQQC DC   +TD TWKAVVQVRQRVDHKRTF+YLEQL+LKHN HS+C +IQ+FRDGMDFYF+E+N A RFTDFL+G +P R K++KKL+S+DNHSN+FNF +T L  ++P+CKDDL +LP RLA +L +I  LV+ +R++  V+ VDPLT   A    + Y +      S F  ++S+ RL  Y+VLG EP+  + R G  ++    K RLA VE+AR  DLG ND +F  V+HLGH+LR GD+V+GYD+SA NL   +   +    ++P+V+LVRK+Y             GV +   ++R W LR+LE D            R++  +E D   YERF+QQLEGDKEMR+ VN+Y+  AGP           +   EG E              DE DEE++ ++ELL+ L +
Sbjct:   18 TVLCCQCGNPIAANPSMMCAHCLSVRSDITEGIATQLSVHRCRGCERWLRPSWVTAELESKELMALCLRKIKGLSKVNLVDAQWIWTEPHSMRLKIKVTIQKEVDGGAILQQSFVVEFVIRNQQCEDCQKQYTDGTWKAVVQVRQRVDHKRTFYYLEQLLLKHNVHSRCISIQSFRDGMDFYFAEKNEAVRFTDFLQGNIPVRIKNTKKLISSDNHSNIFNFKFTFLCIIIPLCKDDLTVLPVRLAKTLSDISPLVLVERVTRLVHLVDPLTCDRATFDSDHYGKLTSGVESSFGGIMSAPRLIEYIVLGIEPILASERAGAASKVFKSKTRLAHVEVARASDLGVNDTKFHTVSHLGHILRTGDTVLGYDVSAANLDDADVARIEKRRALPEVVLVRKLY-------------GVES---QRRGWTLRKLEYDAVEE----PTRTRKKDDMESDSADYERFIQQLEGDKEMRKHVNLYRREAGPRKAAAAA-VDPLEEDEGEE--------------DEMDEEQVHIDELLEGLDI 519          
BLAST of mRNA_C-tenellus_contig117.11.2 vs. uniprot
Match: W7TWI9_9STRA (60S ribosomal export protein NMD3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWI9_9STRA)

HSP 1 Score: 511 bits (1317), Expect = 2.420e-167
Identity = 287/576 (49.83%), Postives = 377/576 (65.45%), Query Frame = 2
Query:  248 PQQMMPTMLCCMCSTPIAPNPTSMCVQCIRTQVDITEGVATNLTIHECRGCKRYLRPP----WVEAKLESRELMALCLRKVIGLKKVKLVDAAWIWTEPHSRRLKLKLTVQKEVGNGAVLQQVMGVTFVVRNQQCTDCAAAFTDSTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTFRDGMDFYFSERNHAARFTDFLEGVVPCRTKHSKKLVSADNHSNVFNFHYTNLVTLVPVCKDDLVLLPRRLADSLGNIPRLVIAQRISSAVNFVDPLTAQTAEVTEEKYWRS--EFPSLLSSTRLTVYVVLGTEPLPDNPRPGMPARRRIRKARLAEVELARDDDLGKNDIRFTAVTHLGHLLRAGDSVMGYDMSAVNLPSGEGDSL----LSSMPDVILVRKVYPRNTTSGDNNSGDGVGTGGGEKRQWKLRELEKDESGMGGGGAFAGREEAMVEQDYERFLQQLEGDKEMRRQVNIYKAGPVAVRGRRGT------------------------TSVGTGEGG---EXXXXXXXXXXMVDGDEADEEEIRLEELLDELTLDDAETGPDE 1864
            P Q     +CCMC+  I PNPT+MC+QC+RTQV+I  G++T +T+H+CRGC +Y+       W   + ESRELMA+CLRKV GL +++LVDA WIWTEPHS+RLKLKLTVQ+EV NGAVLQ+ + V FVVRNQQC DC A++T   WKA+VQVRQRVDHKRTF +LEQLILKHNAH+Q   IQ F DGMDFYF+ERN AARFT+FLE   P R K SKKLVS D+HSNVFN+ YT ++ +VPVCKDDLV+LP +LA +LG+I RL +  R+ + ++ +DPLT QTAEV+ EKY ++  EF +LLS++RL  ++VLG+EP     +   PARR  ++ RLAEVE+A   DLG ND R+   THLGH+LRAGD+V+GY ++  +L S + D L     + +PD +LVRKVY        +N G         +  W+L++ E DE  +      AG  E   ++D   + QQLEGD+EMRR+VN+YKAG     G   T                        +++G G+G    +            D  E DEE +RL+ELLD+L LDD +  PD+
Sbjct:   10 PNQTPVAAICCMCAINIQPNPTNMCLQCLRTQVNIASGLSTRVTMHQCRGCLKYMGGSGGTGWSHYEAESRELMAVCLRKVAGLNRLRLVDAGWIWTEPHSKRLKLKLTVQQEVMNGAVLQEAVVVEFVVRNQQCPDCQASYTIGAWKAIVQVRQRVDHKRTFLHLEQLILKHNAHAQALQIQGFADGMDFYFAERNQAARFTEFLETACPVRVKQSKKLVSQDDHSNVFNYKYTTIIEIVPVCKDDLVILPTKLAQNLGDIARLCLVLRVLNHLHLIDPLTGQTAEVSVEKYHKAGFEFRALLSASRLVEFMVLGSEPALAPTKTSAPARR-SKRHRLAEVEVALMSDLGANDTRYRVFTHLGHILRAGDTVLGYLLATASLNSADADELETKTRAGLPDAVLVRKVY--------SNEGR-------IRPAWRLKKFEADEMEV----VEAGNAE-QEDRDLRDYRQQLEGDREMRRRVNMYKAGRPLPGGAEDTDHENAALGQKAGKTKGKVEKMTVVSAMGEGDGSTRLDERDRSTNEGLGEDVGEDDEEALRLDELLDDLELDDPDAPPDD 564          
BLAST of mRNA_C-tenellus_contig117.11.2 vs. uniprot
Match: A0A7S2AZN0_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZN0_9STRA)

HSP 1 Score: 503 bits (1296), Expect = 1.120e-165
Identity = 273/517 (52.80%), Postives = 359/517 (69.44%), Query Frame = 2
Query:  317 MCVQCIRTQVDITEGVATNLTIHECRGCKRYLRPPWVEAKLESRELMALCLRKVIGLKKVKLVDAAWIWTEPHSRRLKLKLTVQKEVGNGAVLQQVMGVTFVVRNQQCTDCAAAFTDSTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTFRDGMDFYFSERNHAARFTDFLEGVVPCRTKHSKKLVSADNHSNVFNFHYTNLVTLVPVCKDDLVLLPRRLADSLGNIPRLVIAQRISSAVNFVDPLTAQTAEVTEEKYWR-SEFPSLLSSTRLTVYVVLGTEPLP-DNPRPGMPARRRIRKARLAEVELARDDDLGKNDIRFTAVTHLGHLLRAGDSVMGYDMSAVNLPSGEGDSLLS-----SMPDVILVRKVYPRNTTSGDNNSGDGVGTGGGEKRQWKLRELE-KDESGMGGGGAFAGREEAMVEQDYERFLQQLEGDKEMRRQVNIYKAGPVAVRGRRGTTSVGTGEGGEXXXXXXXXXXMVDGDEADEEEIRLEELLDELTLDD 1843
            MC QC+++ VDIT+G+ T L+++ CRGC+++L+P W+EA LES EL+ALCL+K+ GL KVKLVDA+W+WTEPHS RLK+KL +QKEV N AVLQQ   V +V+RNQQC+DC   +T   WKAVVQVRQRVDHKRTF+YLEQL+LKH  H+ C +IQTFRDGMDFYF+ERN A RFTDFL+ VVP R K++KKL+S+DNHSN+FN+ +T+L  + P+CKDDLV+LP+ LA +LGNI  LV+ +R+S+ ++ VDP T Q A    E +++   F ++LS+ RL  YVVLGTE L  D      P   + RK RL EVELAR  DLG ND R T V+HLGHLLRAGD+V+GYD+    L S + +++       ++PD  LVRK+Y      G  + GDG  T   + R+WKL+EL  ++E   GG GA     E +  +DYE+F+QQLEGD+EMRRQVN++KA       +   T+V T                 D  E DE+EIR+ ELL++L LDD
Sbjct:    1 MCAQCLKSAVDITDGIPTQLSVYRCRGCQKWLKPGWIEADLESGELLALCLKKIRGLNKVKLVDASWVWTEPHSMRLKIKLNIQKEVMNAAVLQQAFVVEYVIRNQQCSDCQKQYTGGVWKAVVQVRQRVDHKRTFYYLEQLLLKHGVHTNCLSIQTFRDGMDFYFAERNQAVRFTDFLQTVVPIRMKNTKKLISSDNHSNLFNYKFTHLGVIAPLCKDDLVVLPKALALTLGNISPLVLIERVSTFIHLVDPFTCQRASFDIEHFYKVGAFGAVLSAARLVEYVVLGTEDLILDERESSTPTPTQKRKKRLVEVELARSADLGVNDTRLTCVSHLGHLLRAGDTVLGYDLERGALHSLDRETMAQVEKRRALPDSALVRKLY------GVGSGGDGETT---KSRRWKLKELAVQEEERNGGKGA-----EDVAMKDYEQFMQQLEGDREMRRQVNLFKA---TDDDQDMDTAVATD----------------DACEMDEQEIRIGELLEDLGLDD 484          
BLAST of mRNA_C-tenellus_contig117.11.2 vs. uniprot
Match: T0RPV6_SAPDV (60S ribosomal export protein NMD3 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0RPV6_SAPDV)

HSP 1 Score: 498 bits (1281), Expect = 2.160e-163
Identity = 253/482 (52.49%), Postives = 325/482 (67.43%), Query Frame = 2
Query:  236 MQTVPQQMMPTMLCCMCSTPIAPNPTSMCVQCIRTQVDITEGVATNLTIHECRGCKRYLRPPWVEAKLESRELMALCLRKVIGLKKVKLVDAAWIWTEPHSRRLKLKLTVQKEVGNGAVLQQVMGVTFVVRNQQCTDCAAAFTDSTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTFRDGMDFYFSERNHAARFTDFLEGVVPCRTKHSKKLVSADNHSNVFNFHYTNLVTLVPVCKDDLVLLPRRLADSLGNIPRLVIAQRISSAVNFVDPLTAQTAEVTEEKYWRSEFPSLLSSTRLTVYVVLGTEPLPDNPRPGMPARRRIRKARLAEVELARDDDLGKNDIRFTAVTHLGHLLRAGDSVMGYDMSAVNLPSGEG---DSLLSSMPDVILVRKVYPRNTTSGDNNSGDGVGTGGGEKRQWKLRELEKDESGMGGGGAFAGREEAMVEQDYERFLQQLEGDKEMRRQVNIYK 1672
            M  VP+Q +P +LCCMC+ PI  N  +MCV C++ QVD+TEG+   + +H+CRGC ++ RPPWV A+LESREL+A+CL+K+ GL KVKLVDA W+WTEPHS+RLKLKLTVQKEV NGA+LQQ   VTF+VRNQQC +C A+FT+++WKAVVQVRQ+VDHKRTFFYLEQLILKH  H + ++I++  DG+DF+F ERNHA RF DFL   VP + K +KKL+SADNHSN  N+ +T  V L  VCKDDLV LP +LA  LGNI  L I  +++S+++ +DP T Q AE+  +KYWR  F +L SS +L  Y VL + PL      G+P R   RK RLAE+E+ R+ D G ND RF   THLG LL  GD+ MGYD+S       +    D    ++PDVILVRK + R                    R WKL+ +E  ES +         E+   E DY+ FL +LE DKEMR ++NIYK
Sbjct:    1 MLHVPEQSLPNILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPPWVAAELESRELLAICLKKISGLNKVKLVDAGWVWTEPHSKRLKLKLTVQKEVMNGAILQQSFVVTFIVRNQQCDECQASFTNNSWKAVVQVRQKVDHKRTFFYLEQLILKHRVHEKTSSIESHPDGVDFFFVERNHALRFVDFLSETVPIKLKTAKKLISADNHSNTANYKFTYAVDLATVCKDDLVALPLKLARQLGNISSLCIVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLVEYTVLDSNPLQIPTLGGVPVRTN-RKTRLAEMEIVRNSDFGVNDTRFQTTTHLGMLLNVGDTAMGYDLSTSVFNDSDTKPLDEAGITLPDVILVRKQFLRRVQK--------------RSRNWKLKNIEGIESAV----PVKKAEQTKTEMDYQHFLDELEDDKEMRSKINIYK 463          
BLAST of mRNA_C-tenellus_contig117.11.2 vs. uniprot
Match: A0A024UHG0_9STRA (60S ribosomal export protein NMD3 n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024UHG0_9STRA)

HSP 1 Score: 493 bits (1270), Expect = 1.090e-161
Identity = 251/483 (51.97%), Postives = 329/483 (68.12%), Query Frame = 2
Query:  236 MQTVPQQMMPTMLCCMCSTPIAPNPTSMCVQCIRTQVDITEGVATNLTIHECRGCKRYLRPPWVEAKLESRELMALCLRKVIGLKKVKLVDAAWIWTEPHSRRLKLKLTVQKEVGNGAVLQQVMGVTFVVRNQQCTDCAAAFTDSTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTFRDGMDFYFSERNHAARFTDFLEGVVPCRTKHSKKLVSADNHSNVFNFHYTNLVTLVPVCKDDLVLLPRRLADSLGNIPRLVIAQRISSAVNFVDPLTAQTAEVTEEKYWRSEFPSLLSSTRLTVYVVLGTEPLPDNPRPGMPARRRIRKARLAEVELARDDDLGKNDIRFTAVTHLGHLLRAGDSVMGYDMSAV---NLPSGEGDSLLSSMPDVILVRKVYPRNTTSGDNNSGDGVGTGGGEKRQWKLRELEKDESGMGGGGAFAGREEAMVEQDYERFLQQLEGDKEMRRQVNIYKA 1675
            M  VP+  +P +LCC+C+ PI  N  +MCV C++ QVD+TEG+   + +H+CRGC ++ RP WV A LESREL+A+CL+K+ GL KVKLVDA WIWTEPHS+RLKLKLTVQKEV NGA+LQQ   VTF+VRNQQC DC A+FT+ +WKAVVQVRQ+V+HKRTFF+LEQLILKH  H + T+I++  DG+DF+F ERNHA RF DFL+  VP   K +KKL+SADNHSN  N+ +T  V + PVCKDDLV LP +LA  LGNI  L +  +++S+++ +DP T Q AE+  +KYWR  F +L SS +LT Y VL + PL  + + G+P R   RK RLA+V++ R+ D G ND+RF  VTHLG LL  GD+ MGYD+S     +L +   D    S+PDV+LVRK + R                    R+WKL+ +E  E  M         ++   + DYE FL  LE DK+MR ++NIYKA
Sbjct:    1 MMYVPEHELPDILCCICAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPQWVSADLESRELLAICLKKITGLNKVKLVDAGWIWTEPHSKRLKLKLTVQKEVMNGAILQQSFIVTFIVRNQQCDDCQASFTNHSWKAVVQVRQKVEHKRTFFFLEQLILKHRVHEKTTSIESQPDGVDFFFVERNHALRFVDFLQETVPISLKTAKKLISADNHSNTANYKFTYAVDIAPVCKDDLVALPLKLARQLGNISSLCLVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLTEYTVLDSSPLEISTKGGIPVRTN-RKTRLADVDIVRNSDFGVNDMRFHTVTHLGMLLNVGDTAMGYDLSTSVFNDLDTKPLDEAGISLPDVVLVRKQFLRRVQK--------------RSRKWKLKTIEGIEPTM----PLKKADQTKHDLDYEHFLNDLEEDKDMRSRINIYKA 464          
BLAST of mRNA_C-tenellus_contig117.11.2 vs. uniprot
Match: A0A6G0XWA3_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWA3_9STRA)

HSP 1 Score: 493 bits (1269), Expect = 1.340e-161
Identity = 262/542 (48.34%), Postives = 347/542 (64.02%), Query Frame = 2
Query:  245 VPQQMMPTMLCCMCSTPIAPNPTSMCVQCIRTQVDITEGVATNLTIHECRGCKRYLRPPWVEAKLESRELMALCLRKVIGLKKVKLVDAAWIWTEPHSRRLKLKLTVQKEVGNGAVLQQVMGVTFVVRNQQCTDCAAAFTDSTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTFRDGMDFYFSERNHAARFTDFLEGVVPCRTKHSKKLVSADNHSNVFNFHYTNLVTLVPVCKDDLVLLPRRLADSLGNIPRLVIAQRISSAVNFVDPLTAQTAEVTEEKYWRSEFPSLLSSTRLTVYVVLGTEPLPDNPRPGMPARRRIRKARLAEVELARDDDLGKNDIRFTAVTHLGHLLRAGDSVMGYDMSAVNLPSGEG---DSLLSSMPDVILVRKVYPRNTTSGDNNSGDGVGTGGGEKRQWKLRELEKDESGMGGGGAFAGREEAMVEQD--YERFLQQLEGDKEMRRQVNIYKAGPVAVRGRRGTTSVGTGEGGEXXXXXXXXXXMVDGDEADEEEIRLEELLDELTLDDAETG 1855
            V +  +P +LCC+C+ PI  N  +MCV C++ QVD+TEG+   + +H+CRGC ++ RP WV A+LESREL+A+CL+K+ GL KVKLVDA WIWTEPHS+RLKLKLTVQKEV NGA+LQQ   VTF+VRNQQC +C A+FT+ +WKAVVQVRQ+V+HKRTFFYLEQLILKH  H + TNI++  DG+DF+F ERNHA RF DFL+  VP   K +KKL+SADNHSN  N+ +T  V + PVCKDDLV LP +LA  LGNI  L +  +++S+++ +DP T Q AE+  EKYWR  F +L SS +LT Y VL + P+    + G+P R   RK RLAE+E+ R+ D G ND RF  V+HLG LL  GD+ MGYD+        +    D    ++PDV+LVRK + R                   +R+WKL+ +E  ES         G+++   + D  YE FL  LE DKEMR ++NIYK             S+  G+GG+                     I L+ELLD++T++D E G
Sbjct:    3 VAEHSLPDILCCICAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPQWVSAELESRELLAICLKKITGLNKVKLVDAGWIWTEPHSKRLKLKLTVQKEVMNGAILQQSFIVTFIVRNQQCDECQASFTNHSWKAVVQVRQKVEHKRTFFYLEQLILKHRVHEKTTNIESQPDGVDFFFVERNHALRFVDFLQETVPISLKTAKKLISADNHSNTANYKFTYAVDIAPVCKDDLVALPLKLARQLGNISSLCLVTQVTSSIHVIDPFTMQRAEIENEKYWRYPFKALRSSKQLTEYTVLDSTPMEIPMKGGVPVRTN-RKTRLAELEIVRNSDFGVNDTRFQTVSHLGMLLNVGDTAMGYDLVTSVFNDADTKPLDEAGITLPDVVLVRKQFLRRVQK--------------RQRKWKLKTIEGIES--------MGKKDDPTKHDLDYEHFLNDLEQDKEMRSRINIYKNDEXXXXXXXXXASMEDGDGGD---------------------IPLDELLDDMTMEDQENG 500          
BLAST of mRNA_C-tenellus_contig117.11.2 vs. uniprot
Match: W2I7I2_PHYPR (60S ribosomal export protein NMD3 n=9 Tax=Peronosporaceae TaxID=4777 RepID=W2I7I2_PHYPR)

HSP 1 Score: 492 bits (1266), Expect = 4.020e-161
Identity = 253/482 (52.49%), Postives = 331/482 (68.67%), Query Frame = 2
Query:  236 MQTVPQQMMPTMLCCMCSTPIAPNPTSMCVQCIRTQVDITEGVATNLTIHECRGCKRYLRPPWVEAKLESRELMALCLRKVIGLKKVKLVDAAWIWTEPHSRRLKLKLTVQKEVGNGAVLQQVMGVTFVVRNQQCTDCAAAFTDSTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTFRDGMDFYFSERNHAARFTDFLEGVVPCRTKHSKKLVSADNHSNVFNFHYTNLVTLVPVCKDDLVLLPRRLADSLGNIPRLVIAQRISSAVNFVDPLTAQTAEVTEEKYWRSEFPSLLSSTRLTVYVVLGTEPLPDNPRPGMPARRRIRKARLAEVELARDDDLGKNDIRFTAVTHLGHLLRAGDSVMGYDMSAVNLPSGEGDSLLSS---MPDVILVRKVYPRNTTSGDNNSGDGVGTGGGEKRQWKLRELEKDESGMGGGGAFAGREEAMVEQDYERFLQQLEGDKEMRRQVNIYK 1672
            M T+  QM PT+LCCMC+TPI  N  + CV C+++QVD+TEG+   + IH+CRGC R+ RPPWV A+LESREL+A+CL+K+  L +VKL+DA WIWTEPHSRRLKLKLTVQKEV +  ++QQ   VTFVVRNQQC  C A+F + +W+AVVQVRQRVDHKRTFF+LEQLILKH AH + TNI++  DG+DF+FSERNHA RF DFL+  VP + K +KKL+SADNHSN  N+ +T  V + PVCKDDLVLLP +LA  LGN+  L + Q ++S+++ VDP T Q AE+  EKYWR  F +L S   +T + VL + P+   P  G  A R  RK RLA++E+ RD D G ND RF  V+HLG LL  GDS  GYD+++      +   L+ S   +PDV+LV+K++PR                    R WKL+++E    G+   G     + +  EQDYE+FL +LE DKE+R Q+N+YK
Sbjct:    1 MSTMTSQM-PTILCCMCATPIVANAANTCVSCLKSQVDVTEGIPKEVIIHQCRGCMRWSRPPWVAAELESRELLAMCLKKINNLNRVKLIDANWIWTEPHSRRLKLKLTVQKEVMSKMIMQQSFVVTFVVRNQQCDACQASFANQSWRAVVQVRQRVDHKRTFFFLEQLILKHRAHEKTTNIESHPDGVDFFFSERNHALRFVDFLQESVPMKVKTAKKLISADNHSNTHNYKFTYAVEIAPVCKDDLVLLPVKLARMLGNMSCLCLVQSVTSSIHVVDPFTTQVAEIDSEKYWRYPFRALRSIKAMTDFTVLDSNPMAI-PSGGGRAIRVTRKTRLADMEVVRDADFGVNDTRFRTVSHLGMLLHVGDSARGYDLTSAVFNDADLVPLVQSGMTLPDVVLVKKMFPRRIQK--------------RARNWKLKKME----GVEQAGPVRKTDLSKEEQDYEQFLDELEEDKELRSQINLYK 462          
BLAST of mRNA_C-tenellus_contig117.11.2 vs. uniprot
Match: D0MSQ0_PHYIT (60S ribosomal export protein NMD3 n=18 Tax=Peronosporaceae TaxID=4777 RepID=D0MSQ0_PHYIT)

HSP 1 Score: 491 bits (1263), Expect = 1.210e-160
Identity = 254/482 (52.70%), Postives = 330/482 (68.46%), Query Frame = 2
Query:  236 MQTVPQQMMPTMLCCMCSTPIAPNPTSMCVQCIRTQVDITEGVATNLTIHECRGCKRYLRPPWVEAKLESRELMALCLRKVIGLKKVKLVDAAWIWTEPHSRRLKLKLTVQKEVGNGAVLQQVMGVTFVVRNQQCTDCAAAFTDSTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTFRDGMDFYFSERNHAARFTDFLEGVVPCRTKHSKKLVSADNHSNVFNFHYTNLVTLVPVCKDDLVLLPRRLADSLGNIPRLVIAQRISSAVNFVDPLTAQTAEVTEEKYWRSEFPSLLSSTRLTVYVVLGTEPLPDNPRPGMPARRRIRKARLAEVELARDDDLGKNDIRFTAVTHLGHLLRAGDSVMGYDMSAVNLPSGEGDSLLSS---MPDVILVRKVYPRNTTSGDNNSGDGVGTGGGEKRQWKLRELEKDESGMGGGGAFAGREEAMVEQDYERFLQQLEGDKEMRRQVNIYK 1672
            M T+  QM PT+LCCMC+TPI  N  + CV C+++QVD+TEG+   + IH+CRGC R+ RPPWV A+LESREL+A+CL+K+  L +VKL+DA WIWTEPHSRRLKLKLTVQKEV +  ++QQ   VTFVVRNQQC  C A+F + +W+AVVQVRQRVDHKRTFF+LEQLILKH AH + TNI++  DG+DF+FSERNHA RF DFL+  VP + K +KKL+SADNHSN  N+ +T  V + PVCKDDLVLLP +LA  LGN+  L + Q ++S+++ VDP T Q AEV  EKYWR  F +L S   +T   VL + P+   P  G  A R  RK RLA++E+ RD D G ND RF  V+HLG LL  GDS  GYD+++      +   L+ S   +PDV+LV+K++PR                    R WKL+++E    G+   G     + +  EQDYE+F+ +LE DKEMR Q+N+YK
Sbjct:    1 MSTMTSQM-PTILCCMCATPIVANAANTCVSCLKSQVDVTEGIPKEVIIHQCRGCMRWSRPPWVAAELESRELLAMCLKKINNLNRVKLIDANWIWTEPHSRRLKLKLTVQKEVLSKMIMQQSFVVTFVVRNQQCDACQASFANQSWRAVVQVRQRVDHKRTFFFLEQLILKHRAHEKTTNIESHPDGVDFFFSERNHALRFVDFLQESVPMKVKTAKKLISADNHSNTHNYKFTYAVEIAPVCKDDLVLLPVKLARMLGNMSCLCLVQSVTSSIHVVDPFTTQVAEVDSEKYWRYPFRALRSIKAMTDLTVLDSNPMAI-PSGGGRAIRVTRKTRLADMEVVRDADFGVNDTRFRTVSHLGMLLHVGDSARGYDLTSAVFNDADLVPLVQSGLTLPDVVLVKKMFPRRIQK--------------RARNWKLKKME----GVEQAGPVRKADLSKEEQDYEQFMDELEEDKEMRSQINLYK 462          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig117.11.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNZ8_ECTSI2.420e-25770.3860S ribosomal export protein NMD3 n=2 Tax=Ectocarp... [more]
A0A835ZB23_9STRA6.240e-21057.6060S ribosomal export protein NMD3 n=1 Tax=Tribonem... [more]
A0A7S2WJE1_9STRA8.700e-16851.0260S ribosomal export protein NMD3 n=1 Tax=Rhizochr... [more]
W7TWI9_9STRA2.420e-16749.8360S ribosomal export protein NMD3 n=2 Tax=Monodops... [more]
A0A7S2AZN0_9STRA1.120e-16552.8060S ribosomal export protein NMD3 n=1 Tax=Dictyoch... [more]
T0RPV6_SAPDV2.160e-16352.4960S ribosomal export protein NMD3 n=4 Tax=Saproleg... [more]
A0A024UHG0_9STRA1.090e-16151.9760S ribosomal export protein NMD3 n=7 Tax=Aphanomy... [more]
A0A6G0XWA3_9STRA1.340e-16148.3460S ribosomal export protein NMD3 n=1 Tax=Aphanomy... [more]
W2I7I2_PHYPR4.020e-16152.4960S ribosomal export protein NMD3 n=9 Tax=Peronosp... [more]
D0MSQ0_PHYIT1.210e-16052.7060S ribosomal export protein NMD3 n=18 Tax=Peronos... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig117contigC-tenellus_contig117:15875..20180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LNZ8
PFAMsNMD3
Model size2865
Max annot lvl2759|Eukaryota
KEGG koko:K07562
KEGG Pathwayko03008,ko03013,map03008,map03013
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.02e-264
EggNOG OGsCOG1499@1|root,KOG2613@2759|Eukaryota
Ec32 ortholog descriptionNMD3
Ec32 orthologEc-01_000570.1
Descriptionribosomal large subunit binding
Cds size1728
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig117.11.2prot_C-tenellus_contig117.11.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig117 16089..19257 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789190.6707008-UTR-C-tenellus_contig117:15874..160881680789190.6707008-UTR-C-tenellus_contig117:15874..16088Choristocarpus tenellus KU2346UTRC-tenellus_contig117 15875..16088 +
1680789190.7429795-UTR-C-tenellus_contig117:19257..201801680789190.7429795-UTR-C-tenellus_contig117:19257..20180Choristocarpus tenellus KU2346UTRC-tenellus_contig117 19258..20180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789190.685043-CDS-C-tenellus_contig117:16088..163491680789190.685043-CDS-C-tenellus_contig117:16088..16349Choristocarpus tenellus KU2346CDSC-tenellus_contig117 16089..16349 +
1680789190.6998167-CDS-C-tenellus_contig117:16561..168701680789190.6998167-CDS-C-tenellus_contig117:16561..16870Choristocarpus tenellus KU2346CDSC-tenellus_contig117 16562..16870 +
1680789190.716007-CDS-C-tenellus_contig117:17714..181821680789190.716007-CDS-C-tenellus_contig117:17714..18182Choristocarpus tenellus KU2346CDSC-tenellus_contig117 17715..18182 +
1680789190.7287002-CDS-C-tenellus_contig117:18567..192571680789190.7287002-CDS-C-tenellus_contig117:18567..19257Choristocarpus tenellus KU2346CDSC-tenellus_contig117 18568..19257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig117.11.2

>prot_C-tenellus_contig117.11.2 ID=prot_C-tenellus_contig117.11.2|Name=mRNA_C-tenellus_contig117.11.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=576bp
MTMEVEDMQTVPQQMMPTMLCCMCSTPIAPNPTSMCVQCIRTQVDITEGV
ATNLTIHECRGCKRYLRPPWVEAKLESRELMALCLRKVIGLKKVKLVDAA
WIWTEPHSRRLKLKLTVQKEVGNGAVLQQVMGVTFVVRNQQCTDCAAAFT
DSTWKAVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTFRDGMDFYF
SERNHAARFTDFLEGVVPCRTKHSKKLVSADNHSNVFNFHYTNLVTLVPV
CKDDLVLLPRRLADSLGNIPRLVIAQRISSAVNFVDPLTAQTAEVTEEKY
WRSEFPSLLSSTRLTVYVVLGTEPLPDNPRPGMPARRRIRKARLAEVELA
RDDDLGKNDIRFTAVTHLGHLLRAGDSVMGYDMSAVNLPSGEGDSLLSSM
PDVILVRKVYPRNTTSGDNNSGDGVGTGGGEKRQWKLRELEKDESGMGGG
GAFAGREEAMVEQDYERFLQQLEGDKEMRRQVNIYKAGPVAVRGRRGTTS
VGTGEGGEGLGVGAEGDGMVDGDEADEEEIRLEELLDELTLDDAETGPDE
VVMGSAPTLNIEALELEAVQDKVLE*
back to top

mRNA from alignment at C-tenellus_contig117:15875..20180+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig117.11.2 ID=mRNA_C-tenellus_contig117.11.2|Name=mRNA_C-tenellus_contig117.11.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4306bp|location=Sequence derived from alignment at C-tenellus_contig117:15875..20180+ (Choristocarpus tenellus KU2346)
GGCCCTCAAAACGGGAGTTTGTATTCTGATTGAAGCGTCGGTTATATTTT AGTGGTTTGATAAAGGTTTTGTCCACCAACCTACTTTGACATCTCAGGTC CTAACGGCGCGCTTCTTAGGGTCGAGGCGATAGGATCAAACATCTCAGAC TAACACTAAGCTTGGGTTACCGTAGTGAAAGCACCGCAGTAAATAAAATA GTGCATAAGAGTCGATGACTATGGAGGTCGAAGATATGCAGACTGTACCC CAGCAGATGATGCCAACCATGTTATGCTGCATGTGCTCCACTCCGATCGC ACCCAATCCCACCAGTATGTGCGTTCAGTGCATCAGGACTCAGGTCGATA TAACGGAGGGTGTGGCAACTAATCTGACTATTCATGAGTGCCGTGGTTGC AAACGCTATCTGCGCCCACCCTGGGTTGAAGCCAAACTCGAGTCGCGCGA GCTCATGGCCCTGTGTCTTCGCAAGGTGACGAAGGCTCTCCTGTTAATTC TCTGTCGTGCATTGGTCTATGTTTCATTTTTTATGTTTTCAGTAAGGATG CTGTTGGCTGTTCCAAACCACAACCAGCGTTCGTACCAAGTACATTATGG TGTTTTTTTGTCCCCCTATTCTGGCTCTAGTGTTTATACCGAAACCACCC CCTGGTTTATTCATATGTGATAGTGTACACCTGTCAGGTAATAGGCCTCA AGAAGGTCAAACTGGTTGACGCCGCCTGGATCTGGACTGAGCCTCACTCG AGGCGCCTAAAGCTGAAATTGACGGTTCAGAAGGAGGTTGGAAACGGCGC GGTTCTTCAGCAGGTCATGGGTGTTACCTTTGTTGTACGAAATCAGCAGT GCACGGACTGCGCGGCAGCCTTCACTGATAGTACATGGAAGGCTGTTGTT CAAGTGCGTCAGCGGGTAGACCACAAGCGAACCTTCTTTTACTTGGAGCA ATTGATCCTCAAGCACAACGCACACTCACAGTGCACAAACATTCAGGTGC GTGTGTGTGTGTGCAGCTCACCTAGCTTTTTTATTTAATGCTATTTTGCT GTAGGCAATCAGTCTGTAATCTTGAAGGTCGTACTATAAATATATATATA TTCTACTACTAGAGTTTCGTGGTGTAGAAGCTTGCATCCATCTAAAAAGG AAAGAACAGGTAGAGGTGATTTTGATGACATAGCCGTTGATGATGCCTCA TACCCATTTGTGTCGATATTTTGGTCTTCTGTTGTTTCTTTGATTAAGTT CTTTTGTTGCCATCACTGGGACACCGGGCTCTGCATAGGCGTTGCCCCTT GAATCCGTGCATGCACGACCCAAAATGGGTTGCTGCATGCGTTTGGCGAG GGGTGTCATCAGGTCCGAAGAACAAATATCCCCAAGGAGGGTAGCCAGTT TTATAACCCAACCTCGCCTCCATTTGCTACTTCAATGCCCAAGCGGAGAT GTGTGTGGTATGACCTGTCGGCTGGTACACTAGCACGTTTCCACTCCTGT ATGCAGTAGTTTTTTCTTTCTCGGTTGTGTAATGGTTGTAATAAGGTCTA CATCCTTTTTTGCTTTTGAAGTTGTATAGTTTTGTTTTATTATTGTTCTC TCTATCTACACCCTGAGTCCTGGGAAATGTACACAGGTTTGGATTGTGTC TCCTTGTTTTTGTTGACTCCTCCTGCCACAGTGCCATTTCGCATGCAGGA GTTGTTCCACTATGGTACATCCTTGATCCCTTTTTCCCCTTGCACCCAAG TTCTTTTCTGACCACCATTTCACCTCCCCATTCCCACTTACCTCTCATTC TGTTTCCTTGTTTTCATCTTATCAAAACAATGTACCAAAGACGTTCCGGG ATGGTATGGACTTCTACTTCTCCGAGCGAAACCATGCCGCACGCTTCACA GACTTCTTGGAAGGCGTGGTCCCCTGTCGCACCAAGCACAGCAAGAAACT TGTCTCCGCAGATAACCACTCCAATGTATTCAACTTCCACTACACAAATC TGGTGACGCTGGTCCCGGTCTGCAAGGACGACTTGGTCCTTTTGCCACGT CGCCTTGCTGATAGTCTTGGCAACATCCCACGCCTTGTGATTGCTCAACG TATATCAAGTGCTGTAAATTTTGTGGATCCGTTGACGGCACAAACAGCTG AGGTGACAGAGGAGAAGTACTGGAGGAGTGAGTTCCCTAGTCTCCTCAGC AGCACACGTCTCACAGTGTATGTGGTGCTGGGAACTGAGCCCTTGCCGGA CAATCCACGACCTGGGATGCCTGCGCGACGACGGATCAGGAAGGCGAGGC TTGCGGAGGTGAGGTGTGGTGAGGAAGTTTTGGTGTGAAGTGTTTTTTTA ATGAGGTAGTGATGTTTCTTTTTTTTGATGGGTCTCTCACTGAACGACAA TATTGTTAAGGTGTATTGTAGGAAGGCGGGGTGTGTTGCGTGTGATAGAG TTATCGTTCAAACTTCTGCTATTGACCTTACACGTCTAGTTGACTCTGGG TCTGGAGGTAGTAGTGCAGCTTGCAGGTTTTCACGGGCAGCAAGTTGGGT CTGTCCTCTCCTGTCTTCATAATTGACAGCAATCGACCACCCTTTGCCCA TACCAGTGGTTATCGTAGCACCTATTGCATTACAAATTACTCTCCATCCT GACCTGCTCTTTCCCCTTCCCCCCCCAACAATGTATGTGAAAGGTGGAGC TGGCACGTGATGATGACCTTGGAAAAAATGACATTCGGTTTACTGCAGTA ACACACCTCGGACACCTCTTGCGCGCGGGGGACTCAGTTATGGGGTATGA TATGTCGGCAGTAAACCTACCCAGTGGTGAGGGTGACAGCCTCTTGTCCA GCATGCCAGATGTGATCCTTGTTCGGAAGGTGTACCCACGAAATACCACC AGTGGAGACAACAATAGTGGTGATGGGGTAGGTACAGGGGGTGGGGAGAA GCGGCAGTGGAAACTGCGTGAGCTAGAGAAGGATGAAAGCGGAATGGGAG GGGGAGGGGCGTTTGCCGGAAGGGAAGAAGCGATGGTGGAGCAGGACTAT GAGAGGTTCCTCCAACAGCTTGAAGGAGATAAAGAAATGCGTAGACAGGT TAATATCTACAAAGCTGGCCCGGTGGCGGTAAGAGGTAGAAGAGGAACGA CAAGCGTTGGTACAGGAGAGGGTGGTGAAGGTCTTGGGGTCGGTGCAGAG GGAGATGGGATGGTTGATGGTGACGAGGCAGATGAGGAGGAAATCCGATT AGAGGAGCTCTTGGATGAGTTGACCCTGGACGATGCAGAGACTGGTCCTG ATGAAGTGGTGATGGGGTCAGCACCGACTCTTAACATTGAGGCGCTAGAG TTGGAAGCAGTGCAGGATAAAGTGCTTGAATGAAGAATTGATTGTGTTTT TCAATCATAGAGGCCTTTTATTCTGGTGCCGACTTTTAGGGGGAGAGGGT GGTGTGGTGCCCACTCTTCTTTCCAGCAGCAGCGGTGGTGTTTGTGGGGA GATTGATGGTGGTGCTCCTGAGGACCTGAAGGTCGTCTGTGCTAATAGTT TTGATGCTCTTGCTGTGGTGTGTTGCGCACTTTCTGGAAAGTCAACAGGT GCATGCAGTACCTACGTGTGTCTTGGCGCAGAGTTTGATGTGTATAGGTG GGCGTTTGCTATTTTTTTATCTTTGTCAGGCGTTGGGTAGACAAGAGTGT TGTGTGTTTTGAGCTGAAAGTGTCAAAGCTCAGCATCTAGGTTTAGTAAA TTTGGTGCGGTCAAGAAGGACTGCGTGTGTGTTTGTGTGTGCCACAGTTA TGAAATGTGTATATAGAGAGATTTAACAAGACCCTAATCCTTCCAAGTAC ATTTTTATGGTCCTTAGTGCCATTGCCCCTGCTGAAACATTGTAGTTTGT GTGATGGCGTTCCACTGCCTGCCATGTCTGTGAGGATTTCTTGTGAAAAG ATTTGTCATTTCACATTTAACATCCTATAGCCAATATACATGCTGATTAT TTCTCATTTGGGGGGGAGGGTTTCACAGGAAGTTGCTACCCTACTGGTGT TTAAATATGTTTATATTTATATAGTTGTGGTTTAGTTGGACAGGATAGCA TAACTTCGCTAGAAATGTACCTGTTGAATTTGTTGTGTACCATCAGTGGT AAATACAATGTCGCACTGAGTTCCCAAAGTTTGATTTCTTGATTAACAGG AACCAGAAGTTTCCTGTACTCGACTGCTTAATTGAAATATAGGGTTGATA TTTTTGTTGTTGCCCAGAACATAACCAATGTGCAAATTGTAAAAAACATT GCAGAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig117:15875..20180+

>mRNA_C-tenellus_contig117.11.2 ID=mRNA_C-tenellus_contig117.11.2|Name=mRNA_C-tenellus_contig117.11.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=1728bp|location=Sequence derived from alignment at C-tenellus_contig117:15875..20180+ (Choristocarpus tenellus KU2346)
ATGACTATGGAGGTCGAAGATATGCAGACTGTACCCCAGCAGATGATGCC
AACCATGTTATGCTGCATGTGCTCCACTCCGATCGCACCCAATCCCACCA
GTATGTGCGTTCAGTGCATCAGGACTCAGGTCGATATAACGGAGGGTGTG
GCAACTAATCTGACTATTCATGAGTGCCGTGGTTGCAAACGCTATCTGCG
CCCACCCTGGGTTGAAGCCAAACTCGAGTCGCGCGAGCTCATGGCCCTGT
GTCTTCGCAAGGTAATAGGCCTCAAGAAGGTCAAACTGGTTGACGCCGCC
TGGATCTGGACTGAGCCTCACTCGAGGCGCCTAAAGCTGAAATTGACGGT
TCAGAAGGAGGTTGGAAACGGCGCGGTTCTTCAGCAGGTCATGGGTGTTA
CCTTTGTTGTACGAAATCAGCAGTGCACGGACTGCGCGGCAGCCTTCACT
GATAGTACATGGAAGGCTGTTGTTCAAGTGCGTCAGCGGGTAGACCACAA
GCGAACCTTCTTTTACTTGGAGCAATTGATCCTCAAGCACAACGCACACT
CACAGTGCACAAACATTCAGACGTTCCGGGATGGTATGGACTTCTACTTC
TCCGAGCGAAACCATGCCGCACGCTTCACAGACTTCTTGGAAGGCGTGGT
CCCCTGTCGCACCAAGCACAGCAAGAAACTTGTCTCCGCAGATAACCACT
CCAATGTATTCAACTTCCACTACACAAATCTGGTGACGCTGGTCCCGGTC
TGCAAGGACGACTTGGTCCTTTTGCCACGTCGCCTTGCTGATAGTCTTGG
CAACATCCCACGCCTTGTGATTGCTCAACGTATATCAAGTGCTGTAAATT
TTGTGGATCCGTTGACGGCACAAACAGCTGAGGTGACAGAGGAGAAGTAC
TGGAGGAGTGAGTTCCCTAGTCTCCTCAGCAGCACACGTCTCACAGTGTA
TGTGGTGCTGGGAACTGAGCCCTTGCCGGACAATCCACGACCTGGGATGC
CTGCGCGACGACGGATCAGGAAGGCGAGGCTTGCGGAGGTGGAGCTGGCA
CGTGATGATGACCTTGGAAAAAATGACATTCGGTTTACTGCAGTAACACA
CCTCGGACACCTCTTGCGCGCGGGGGACTCAGTTATGGGGTATGATATGT
CGGCAGTAAACCTACCCAGTGGTGAGGGTGACAGCCTCTTGTCCAGCATG
CCAGATGTGATCCTTGTTCGGAAGGTGTACCCACGAAATACCACCAGTGG
AGACAACAATAGTGGTGATGGGGTAGGTACAGGGGGTGGGGAGAAGCGGC
AGTGGAAACTGCGTGAGCTAGAGAAGGATGAAAGCGGAATGGGAGGGGGA
GGGGCGTTTGCCGGAAGGGAAGAAGCGATGGTGGAGCAGGACTATGAGAG
GTTCCTCCAACAGCTTGAAGGAGATAAAGAAATGCGTAGACAGGTTAATA
TCTACAAAGCTGGCCCGGTGGCGGTAAGAGGTAGAAGAGGAACGACAAGC
GTTGGTACAGGAGAGGGTGGTGAAGGTCTTGGGGTCGGTGCAGAGGGAGA
TGGGATGGTTGATGGTGACGAGGCAGATGAGGAGGAAATCCGATTAGAGG
AGCTCTTGGATGAGTTGACCCTGGACGATGCAGAGACTGGTCCTGATGAA
GTGGTGATGGGGTCAGCACCGACTCTTAACATTGAGGCGCTAGAGTTGGA
AGCAGTGCAGGATAAAGTGCTTGAATGA
back to top