mRNA_C-tenellus_contig11695.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11695.1.1
Unique NamemRNA_C-tenellus_contig11695.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11695.1.1 vs. uniprot
Match: D7FPR7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR7_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.710e-18
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 3
Query:  318 EGGE-ADASLDNMLTPAQKRFRETQQRREAAQIKQLVSKTHRERVEDFNALLASKTEHNDIPRCSAAGNG 524
            EG E A   +D+MLTPAQ+RFR+ Q  RE  +I+ +V +THRER+E+FNALLAS TEHNDIPRCSAAGNG
Sbjct:  108 EGNEQAGEEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 177          
BLAST of mRNA_C-tenellus_contig11695.1.1 vs. uniprot
Match: A0A835YYZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYZ7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.410e-14
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 3
Query:  258 REERAVGDSHSEHETAEEPVEGGEADASLDNMLTPAQKRFRETQQRREAAQIKQLVSKTHRERVEDFNALLASKTEHNDIPRCSAAGNG 524
            R   A G + S    A   V G    + +D+ LTPAQKRF+E Q  RE   +++LV KTHR+RVE+FN  +A  TEHNDIPR SAAGNG
Sbjct:   45 RSNSAKGSADSVRGAAAPSVSGS---SDVDSGLTPAQKRFKEAQLARERQVMRELVKKTHRQRVEEFNQKIAKLTEHNDIPRISAAGNG 130          
BLAST of mRNA_C-tenellus_contig11695.1.1 vs. uniprot
Match: A0A836CFW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.350e-13
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  327 EADASLDNMLTPAQKRFRETQQRREAAQIKQLVSKTHRERVEDFNALLASKTEHNDIPRCSAAGNG 524
            E +   D  LTPAQKR+++ +  ++  +IK +V  THR+R+E+FN+ LAS TEHNDIPR SAAGNG
Sbjct:   65 ETEVDPDEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 130          
BLAST of mRNA_C-tenellus_contig11695.1.1 vs. uniprot
Match: A0A7S2H078_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H078_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.940e-12
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  303 AEEPVEGGEADASLDNMLTPAQKRFRETQQRREAAQIKQLVSKTHRERVEDFNALLASKTEHNDIPRCSAAGNG 524
            +EEP E    +     +LT AQKR+R T + RE    +  V KTHRE+VEDFN +L   TEHNDIPR SAAGNG
Sbjct:   47 SEEPEENDNVE-----VLTAAQKRYRATMKAREQEHARVAVRKTHREKVEDFNYMLGELTEHNDIPRVSAAGNG 115          
BLAST of mRNA_C-tenellus_contig11695.1.1 vs. uniprot
Match: H3HAY7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HAY7_PHYRM)

HSP 1 Score: 72.4 bits (176), Expect = 1.010e-11
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 3
Query:  318 EGGEADASLDNMLTPAQKRFRETQQRREAAQIKQLVSKTHRERVEDFNALLASKTEHNDIPRCSAAGNG 524
            + G+ +  LD+ LTPAQ+R  E Q++RE  +I+++ SKT+RER+E+ N  L S TEH+D+PR SAAGNG
Sbjct:   64 QNGDVELELDD-LTPAQRRHAEHQKKREQEEIEKVASKTYRERIEELNQYLGSLTEHHDVPRVSAAGNG 131          
BLAST of mRNA_C-tenellus_contig11695.1.1 vs. uniprot
Match: A0A421F7G8_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F7G8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.330e-11
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 3
Query:  318 EGGEADASLDNM--LTPAQKRFRETQQRREAAQIKQLVSKTHRERVEDFNALLASKTEHNDIPRCSAAGNG 524
            EG ++D+   +M  LTPAQ+R  E Q++RE  +I+++ SKT+RER+ED N  L S TEH+D+PR SAAGNG
Sbjct:   47 EGEKSDSVEIDMADLTPAQRRHAEHQKKREQEEIEKVASKTYRERIEDLNQYLGSLTEHHDVPRVSAAGNG 117          
BLAST of mRNA_C-tenellus_contig11695.1.1 vs. uniprot
Match: A0A3M6VP18_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VP18_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.230e-11
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 3
Query:  354 LTPAQKRFRETQQRREAAQIKQLVSKTHRERVEDFNALLASKTEHNDIPRCSAAGNG 524
            +TPAQ+R  E Q++RE  +IK+L SKT+RER+E+ N  L S TEH+D+PR SAAGNG
Sbjct:   57 MTPAQRRHAEHQKKREQEEIKKLASKTYRERIEELNQHLGSLTEHHDVPRVSAAGNG 113          
BLAST of mRNA_C-tenellus_contig11695.1.1 vs. uniprot
Match: K3WJS6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJS6_GLOUD)

HSP 1 Score: 70.9 bits (172), Expect = 2.960e-11
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 3
Query:  342 LDNMLTPAQKRFRETQQRREAAQIKQLVSKTHRERVEDFNALLASKTEHNDIPRCSAAGNG 524
            L N +TPAQ+R  E +++RE A+I+++  KT+RERVE+ N  L S TEH+D+PR SAAGNG
Sbjct:   64 LMNDMTPAQRRHEEHRRKREQAEIEKMAGKTYRERVEELNQYLGSLTEHHDVPRVSAAGNG 124          
BLAST of mRNA_C-tenellus_contig11695.1.1 vs. uniprot
Match: A0A2D4BPQ2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPQ2_PYTIN)

HSP 1 Score: 69.7 bits (169), Expect = 6.300e-11
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 3
Query:  348 NMLTPAQKRFRETQQRREAAQIKQLVSKTHRERVEDFNALLASKTEHNDIPRCSAAGNG 524
            N +TPAQ+R+ E +++RE AQ++++  KT+R+RVE+ N  L   TEH+DIPR SAAGNG
Sbjct:   59 NDMTPAQRRYEEHRRKREEAQVQKVAEKTYRQRVEELNQYLGRLTEHHDIPRVSAAGNG 117          
BLAST of mRNA_C-tenellus_contig11695.1.1 vs. uniprot
Match: A0A6A4EY48_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EY48_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.560e-10
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 3
Query:  315 VEGGEADASLDNM--LTPAQKRFRETQQRREAAQIKQLVSKTHRERVEDFNALLASKTEHNDIPRCSAAGNG 524
            V+ GE+D +  +M  +TPAQ+R  + Q++RE   I++  SKT+RER+E+ N  L S TEH+D+PR SAAGNG
Sbjct:   45 VDRGESDDAQVDMDDMTPAQRRHAKHQKKREQEAIEKAASKTYRERIEELNQYLGSLTEHHDVPRVSAAGNG 116          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11695.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPR7_ECTSI2.710e-1867.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YYZ7_9STRA1.410e-1451.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFW3_9STRA2.350e-1354.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2H078_9STRA4.940e-1254.05Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
H3HAY7_PHYRM1.010e-1152.17Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A421F7G8_9STRA1.330e-1153.52Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A3M6VP18_9STRA2.230e-1159.65Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
K3WJS6_GLOUD2.960e-1155.74Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BPQ2_PYTIN6.300e-1154.24Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6A4EY48_9STRA1.560e-1050.00Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11695contigC-tenellus_contig11695:128..1514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog325452.fgenesh_scip_prom.46568.10530
PFAMsDUF1754
Model size1387
Max annot lvl4776|Peronosporales
KEGG koko:K13120
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.52e-15
EggNOG OGsKOG3410@1|root,KOG3410@2759|Eukaryota,3QG97@4776|Peronosporales
Ec32 ortholog descriptionProtein of unknown function DUF1754, eukaryotic
Ec32 orthologEc-20_001090.1
Descriptionapoptotic process
Cds size177
COG categoryS
BRITEko00000,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789190.2427976-UTR-C-tenellus_contig11695:127..4771680789190.2427976-UTR-C-tenellus_contig11695:127..477Choristocarpus tenellus KU2346UTRC-tenellus_contig11695 128..477 +
1680789190.26909-UTR-C-tenellus_contig11695:654..15141680789190.26909-UTR-C-tenellus_contig11695:654..1514Choristocarpus tenellus KU2346UTRC-tenellus_contig11695 655..1514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789190.257723-CDS-C-tenellus_contig11695:477..6541680789190.257723-CDS-C-tenellus_contig11695:477..654Choristocarpus tenellus KU2346CDSC-tenellus_contig11695 478..654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11695.1.1prot_C-tenellus_contig11695.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11695 478..654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11695.1.1

>prot_C-tenellus_contig11695.1.1 ID=prot_C-tenellus_contig11695.1.1|Name=mRNA_C-tenellus_contig11695.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=59bp
MLTPAQKRFRETQQRREAAQIKQLVSKTHRERVEDFNALLASKTEHNDIP
RCSAAGNG*
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mRNA from alignment at C-tenellus_contig11695:128..1514+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11695.1.1 ID=mRNA_C-tenellus_contig11695.1.1|Name=mRNA_C-tenellus_contig11695.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1387bp|location=Sequence derived from alignment at C-tenellus_contig11695:128..1514+ (Choristocarpus tenellus KU2346)
AAATTCGCATCTGAGGGATGAGGGCTATTTTGTTGATGGAACTTGGTGTA AGGAGTGATACATATATTCGTCAACCTTGGCAGGGTTAGCGTTGGACGCT CAATGGTCCATCTAGGAAGTATATAGGAGCAATTTATAGGTCAAACTTAC CCTATCATAACTCTTCTGTTTCTACGTCCCCCCTCTTATCTCTTGACAGG AAGAAGAACAAGCGAAAGCGTGAGGAGGAGGCGGCTGCTGCGGCGGCTGT GGCTGCACGGGAGGAGCGTGCTGTGGGAGACTCTCACTCAGAACACGAGA CAGCTGAAGAGCCAGTGGAGGGAGGGGAGGCAGATGCTTCCCTTGATAAT ATGCTGACACCGGCCCAGAAAAGGTTTCGGGAGACGCAGCAACGTAGAGA GGCGGCACAAATTAAGCAGTTGGTCTCGAAGACCCATCGTGAGCGTGTCG AGGACTTCAATGCCTTGTTAGCCTCTAAAACGGAGCACAATGATATTCCC CGTTGTTCTGCCGCTGGTAATGGGTAGTGCGCCATGAGCTTAGCTTGCCT TGGTAACAGAACAATATGGCAGTGCTCTTTCTGTAGGGACCACAGAGAAG ACTGAAGAATCCAGAATCCTACTTTTTGCTGGTACCAAAAGGAGGAATTG TTAGTAGTTGTGAGGACCCGAGAAACAATTTTTGGGCTATGAGCTTGCAG TCTTCACTACTTTTTGTGTAGCATAATGCATCGAGCATCTGAGAATGTAG GTTGGAGCATATCTACCTGTTCCTTCTCTTGAACTTGATGAGGGGTCAGG ACACCTCAACGATTAATGACCCGTTTTCTGTGAGGGACCCTTGAAGGACA AAAAGGATATATAAACCTTAGTGATGGGTAAGCAGTCCATCGGGAATGCC TGTTGACACTCAACTTGATCCTGACCGTTACAGGTTTCTGGGTGTTGTTG CCGTATTTCAGGTTTGTGGGTTGGTGTTGTGTGCTGTTGTCGTCAAGAAC TAAGAGATTTTCGATTTCTGATCAAGCAACCAGAGCCAAGATTGTGTGTG GTGTACGTAGGCTTGCTGCCAATGTGTCTGTCTTAGATGTAATTTTTTTG AGTGGTGTTTTGCTTCTTGAATACTGCTGCACTTTGGTGCTTGAAACACA CACATGTAAAAAGATATTGCACTTCAAGAACTACTAAAAAAGTACTGAAT TTTGGGTTGAGACGCAAGGATCCATCCCCTTTCCACACGGCATAAATGGA AGCTAAATGAAGATCCACACAAGTAGTCACTCTTGTCGCCAAGGGTCACT TCGAGTACGTCTCGTCTCATTCTCCTCTCTATCTATCCCAAGAAAAGACT GTTCACTACATCAACAAAGTCCCACCATCACTCCCTT
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Coding sequence (CDS) from alignment at C-tenellus_contig11695:128..1514+

>mRNA_C-tenellus_contig11695.1.1 ID=mRNA_C-tenellus_contig11695.1.1|Name=mRNA_C-tenellus_contig11695.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=177bp|location=Sequence derived from alignment at C-tenellus_contig11695:128..1514+ (Choristocarpus tenellus KU2346)
ATGCTGACACCGGCCCAGAAAAGGTTTCGGGAGACGCAGCAACGTAGAGA
GGCGGCACAAATTAAGCAGTTGGTCTCGAAGACCCATCGTGAGCGTGTCG
AGGACTTCAATGCCTTGTTAGCCTCTAAAACGGAGCACAATGATATTCCC
CGTTGTTCTGCCGCTGGTAATGGGTAG
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