mRNA_C-tenellus_contig11651.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11651.1.1
Unique NamemRNA_C-tenellus_contig11651.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11651.1.1 vs. uniprot
Match: D7FPJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ5_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 4.830e-83
Identity = 124/190 (65.26%), Postives = 155/190 (81.58%), Query Frame = 1
Query:    1 RTRGYTKRGLEVDLNGQQHVPVLGQETRRSVQAQGPYETERLDAAAEQVLNRLKRVGPREFHAGYRVHKSPYEGGINTGSPFMDWWKNPYLVRGIPKNQAELSKPLKESSLGKYPAKPYYIAVGGNKSAVLPNGRFDVILEAEQTGGVIRNALGRSRRYGVPDTCDVDDQVYPGSTLAHPHLPVPPKKPP 570
            RTRGYTKRGLEVDLNGQQ +P+ G E+RRSVQAQ PY+  +  A  E  L+RLKRVGPREFHAG RV  +PY+ GI+ G+ F+D W+NP+LVRG+P++QAE+ +PL E++LGK+P KP++++VGGNKS VLPNG FDVILEAEQTGGV+R   GR+RR+G+PDTCDV+D V PGSTL  P  P PPK+ P
Sbjct:  210 RTRGYTKRGLEVDLNGQQRIPLKGLESRRSVQAQDPYDLPKKAADLEDALSRLKRVGPREFHAGNRVALAPYQRGISGGTQFLDPWRNPFLVRGVPRDQAEMQRPLNETTLGKFPEKPFHVSVGGNKSTVLPNGIFDVILEAEQTGGVVRTQNGRTRRFGIPDTCDVNDDVVPGSTLFFP--PSPPKQRP 397          
BLAST of mRNA_C-tenellus_contig11651.1.1 vs. uniprot
Match: A0A7S2G8K6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G8K6_9STRA)

HSP 1 Score: 180 bits (456), Expect = 9.630e-52
Identity = 90/175 (51.43%), Postives = 122/175 (69.71%), Query Frame = 1
Query:    1 RTRGYTKRGLEVDLNGQQHVPVLGQETRRSVQAQGPYETERLDAAAEQVLNRLKRVGPREFHAGYRVHKSPYEGGINTGSPFMDWWKNPYLVRGIPKNQAELSKPLKESSLGKYPAKPYYIAVGGNKSAVLPNGRFDVILEAEQTGGVIRNALGRSRRYGVPDTCDV--DDQVYP 519
            RTRGY KRGL  D+NG + VPV   ++R SVQA   Y+     A  E  L+++  +G R+F AG  VH++PY  G+N GS + D W+NPY++RGIPK+QAELS+    +SLGK PA  ++ +VGGNKSAVLPN RFDV+L+AE +GGV     G + R+GV DTCDV  +D+++P
Sbjct:  223 RTRGYQKRGLVTDINGSRRVPVRPAQSRLSVQASSQYDVPLEAARMEAKLDKMSHIGGRDFTAGQAVHQAPYRRGLNDGSQYTDPWRNPYMIRGIPKSQAELSQG--RTSLGKAPAVHFHTSVGGNKSAVLPNDRFDVMLDAESSGGVHLRHKGTTNRFGVSDTCDVRDEDEMFP 395          
BLAST of mRNA_C-tenellus_contig11651.1.1 vs. uniprot
Match: A0A835YV60_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV60_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.160e-49
Identity = 89/169 (52.66%), Postives = 116/169 (68.64%), Query Frame = 1
Query:    1 RTRGYTKRGLEVDLNGQQHVPVLGQETRRSVQAQGPYETERLDAAAEQVLNRLKRVGPREFHAGYRVHKSPYEGGINTGSPFMDWWKNPYLVRGIPKNQAEL-SKPLKE-SSLGKYPAKPYYIAVGGNKSAVLPNGRFDVILEAEQTGGVIRNALGRSRRYGVPDTCDV 501
            R RGY K  LE D+ G   +P      RRS+QA  PY+     AA E V +RLK +GPR F AG RV    Y+ G++ G+ F++ W+NPYL RG+P++  +L S P KE SSLG+ PA+P++ AVGGN+SAVLPNGRFDVI EA+++GG      GR+RR+GVPDTCDV
Sbjct:  209 RKRGYQKLALEPDITGVMRMPQAAPGDRRSLQASQPYDLPSQLAAVEAVQHRLKLLGPRHFAAGERVRTPAYQRGVSEGTQFLEHWQNPYLSRGVPRSPEDLRSPPGKEGSSLGRAPARPFFTAVGGNRSAVLPNGRFDVIAEAQRSGGAAGRPFGRTRRFGVPDTCDV 377          
BLAST of mRNA_C-tenellus_contig11651.1.1 vs. uniprot
Match: A0A7S2G0C8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G0C8_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.840e-41
Identity = 84/182 (46.15%), Postives = 113/182 (62.09%), Query Frame = 1
Query:    4 TRGYTKRGLEVDLNGQQHVPVLGQETRRSVQAQGPYETERLDAAAEQVLNRLKRVG----PREFHAGYRVHKSPYEGGINTGSPFMDWWKNPYLVRGIPKNQAELSKPLKESSLGKYPAKPYYIAVGGNKSAVLPNGRFDVILEAEQTGGVIRNALGRSRRYGVPDTCDV--DDQVYPGSTL 531
            TRGYTKRGL  ++ G + VP+    ++RS+QA   Y+       AE++  R  ++G     + F AG++V    +  G+N GS + D WKNPYL RG+P+ +A+L   +  S+LGK PA  +Y AVGGNKSA LPNG FD IL+AE TGGV      RS R+GVPDTCDV  +D  +P   L
Sbjct:  111 TRGYTKRGLTRNIGGGRVVPIKAPVSKRSLQATSHYDAV---TEAERLEKRRTKIGFMDKTKGFEAGHKVPLPAHRRGLNEGSAYQDPWKNPYLTRGVPEPKADLQ--MGRSTLGKAPAVHFYTAVGGNKSAALPNGTFDAILDAEHTGGVHLRHKHRSLRFGVPDTCDVHSEDPKFPPLVL 287          
BLAST of mRNA_C-tenellus_contig11651.1.1 vs. uniprot
Match: A0A7S2W8X7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8X7_9STRA)

HSP 1 Score: 145 bits (367), Expect = 9.530e-39
Identity = 73/169 (43.20%), Postives = 109/169 (64.50%), Query Frame = 1
Query:    4 TRGYTKRGLEVDLNGQQHVPVLGQETRRSVQAQGPYETERLDAAAEQVLNRLKRVGPREFHAGYRVHKSPYEGGINTGSPFMDWWKNPYLVRGIPKNQAELSKPLKESSLGKYPAKPYYIAVGGNKSAVLPNGRFDVILEAEQTGGVIRNALGRSRRYGVPDTCDVDDQ 510
            +R   K  L + ++G ++VP+     R S+QA  PY+ ER     ++ L +L  VG ++F    R  ++ Y  GIN G  +MD W+NPYLVRG+P++QAELS+    +++GK PA  +Y +VGGNKS VLPNG FDV+L+AE +GGV +     + R+GVPD CD+ ++
Sbjct:  200 SRRRQKADLSMRMSGSRNVPLPQPTKRISLQASVPYDVERDQEQMDRRLTKLGFVGGKDFTVSQRAKEATYRRGINEGCQYMDPWQNPYLVRGVPQSQAELSQ--SRTTIGKAPAVHFYTSVGGNKSTVLPNGLFDVMLDAEYSGGVCQRHKANTVRFGVPDNCDIREE 366          
BLAST of mRNA_C-tenellus_contig11651.1.1 vs. uniprot
Match: A0A482SGT5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SGT5_9ARCH)

HSP 1 Score: 99.8 bits (247), Expect = 2.480e-22
Identity = 58/170 (34.12%), Postives = 92/170 (54.12%), Query Frame = 1
Query:    1 RTRGYTKRGLEVDLNGQQHVPVLGQETRRSVQAQGPYETERLDAAAEQVLNRLKRVGPREFHAGYRVHK-SPYEGGINTGSPFMDWWKNPYLVRGIPKNQAEL--SKPLKESSLGKYPAKPYYIAVGGNKSAVLPNGRFDVILEAEQTGGVIRNALG-RSRRYGVPDTCD 498
            RTRG  KRGL  D N    +P+   ++R S+QA   Y+    +   +++ +R   +  R F  G +    +  +  +  G P++D W NP LV+G+P +Q +L  S  L++      P K +   VGGN+S  L N  FDVI +A++TGG I+  LG  + R+G+P + D
Sbjct:   22 RTRGIAKRGLVPDTNNTLRIPLKVLKSRLSIQASSHYDAIMQEERKQKMTHRYISMSARNFLGGGKTTIINNKDVPLAVGEPYLDAWANPMLVKGVPTSQHQLTESSRLQKPLFAAPPEKAFVSRVGGNRSTALANDLFDVIADAQETGGAIQRHLGTNTARFGLPASAD 191          
BLAST of mRNA_C-tenellus_contig11651.1.1 vs. uniprot
Match: A0A0W8D5N4_PHYNI (N-acetyltransferase CML2 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D5N4_PHYNI)

HSP 1 Score: 91.3 bits (225), Expect = 9.100e-19
Identity = 45/115 (39.13%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   82 RRSVQAQGPYETERLDAAAEQVLNRLKRVGPREFHAGYR----VHKSPYEGGINTGSPFMDWWKNPYLVRGIPKNQAELSKPLKESSLGKYPAKPYYIAVGGNKSAVLPNGRFDV 414
            + ++QA GPY+  + +   +   ++L+R+G  +F A Y     V +     GIN+G+ ++D W+NPY  RG+P+N+ +L   L  ++LG+YP  P+Y+  GGNKS VL N RFDV
Sbjct:  172 KTTLQATGPYDAIQQEKRKQTKYHKLRRIGSSDFAAVYNPEQDVARKRNAPGINSGTEYVDEWRNPYKKRGVPRNKRDLLPQL--TTLGRYPDTPFYLTYGGNKSKVLANDRFDV 284          
BLAST of mRNA_C-tenellus_contig11651.1.1 vs. uniprot
Match: D0NLE6_PHYIT (Uncharacterized protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NLE6_PHYIT)

HSP 1 Score: 90.1 bits (222), Expect = 5.070e-18
Identity = 44/115 (38.26%), Postives = 71/115 (61.74%), Query Frame = 1
Query:   82 RRSVQAQGPYETERLDAAAEQVLNRLKRVGPREFHAGYR----VHKSPYEGGINTGSPFMDWWKNPYLVRGIPKNQAELSKPLKESSLGKYPAKPYYIAVGGNKSAVLPNGRFDV 414
            + ++Q+ GPY+  + +   +   ++L+R+G  +F A Y     V +      IN+G+ ++D W+NPY  RG+P+N+ +L   L  S+LG+YP  P+Y+  GGNKS VL N RFDV
Sbjct:  227 KTTLQSSGPYDAVQQEKRKQTKYHKLRRIGSSDFAAVYNPEQDVARKRNAPSINSGTDYVDEWRNPYKKRGVPRNKRDLLPQL--STLGRYPETPFYLTYGGNKSKVLANDRFDV 339          
BLAST of mRNA_C-tenellus_contig11651.1.1 vs. uniprot
Match: A0A329S815_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S815_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 9.420e-17
Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   82 RRSVQAQGPYETERLDAAAEQVLNRLKRVGPREFHAGYR----VHKSPYEGGINTGSPFMDWWKNPYLVRGIPKNQAELSKPLKESSLGKYPAKPYYIAVGGNKSAVLPNGRFDV 414
            + ++QA   Y+  + +   +   ++L+R+G  +F   Y     V +     GIN+G+ ++D W+NPY  RG+P+N+ +L   L  S+LG+YP  P+Y+  GGNKS VL N RFDV
Sbjct:  227 KTTLQATSSYDAVQQETRKQTKYHKLRRIGTSDFAVVYNPEQDVARKRNAPGINSGTEYVDEWRNPYKKRGVPRNKRDLLPQL--STLGRYPETPFYLTYGGNKSKVLANDRFDV 339          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11651.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FPJ5_ECTSI4.830e-8365.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2G8K6_9STRA9.630e-5251.43Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A835YV60_9STRA1.160e-4952.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2G0C8_9STRA1.840e-4146.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2W8X7_9STRA9.530e-3943.20Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A482SGT5_9ARCH2.480e-2234.12Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A0W8D5N4_PHYNI9.100e-1939.13N-acetyltransferase CML2 n=11 Tax=Phytophthora Tax... [more]
D0NLE6_PHYIT5.070e-1838.26Uncharacterized protein n=3 Tax=Phytophthora infes... [more]
A0A329S815_9STRA9.420e-1737.39Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11651contigC-tenellus_contig11651:316..2114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FPJ5
Preferred nameSPATA17
PFAMsIQ
Model size588
Max annot lvl2759|Eukaryota
KEGG koko:K08515
KEGG Pathwayko04130,map04130
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0008092,GO:0017022,GO:0032027
Exons4
Evalue7.92e-84
EggNOG OGs2CGXK@1|root,2QS0S@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_000820.1
Descriptionmyosin light chain binding
Cds size588
COG categoryS
BRITEko00000,ko00001,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.4103777-CDS-C-tenellus_contig11651:315..4801680789188.4103777-CDS-C-tenellus_contig11651:315..480Choristocarpus tenellus KU2346CDSC-tenellus_contig11651 316..480 +
1680789188.4253166-CDS-C-tenellus_contig11651:656..8151680789188.4253166-CDS-C-tenellus_contig11651:656..815Choristocarpus tenellus KU2346CDSC-tenellus_contig11651 657..815 +
1680789188.4334183-CDS-C-tenellus_contig11651:1130..12791680789188.4334183-CDS-C-tenellus_contig11651:1130..1279Choristocarpus tenellus KU2346CDSC-tenellus_contig11651 1131..1279 +
1680789188.4429588-CDS-C-tenellus_contig11651:1999..21141680789188.4429588-CDS-C-tenellus_contig11651:1999..2114Choristocarpus tenellus KU2346CDSC-tenellus_contig11651 2000..2114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11651.1.1prot_C-tenellus_contig11651.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11651 316..2114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11651.1.1

>prot_C-tenellus_contig11651.1.1 ID=prot_C-tenellus_contig11651.1.1|Name=mRNA_C-tenellus_contig11651.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=196bp
RTRGYTKRGLEVDLNGQQHVPVLGQETRRSVQAQGPYETERLDAAAEQVL
NRLKRVGPREFHAGYRVHKSPYEGGINTGSPFMDWWKNPYLVRGIPKNQA
ELSKPLKESSLGKYPAKPYYIAVGGNKSAVLPNGRFDVILEAEQTGGVIR
NALGRSRRYGVPDTCDVDDQVYPGSTLAHPHLPVPPKKPPLFSTA*
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mRNA from alignment at C-tenellus_contig11651:316..2114+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11651.1.1 ID=mRNA_C-tenellus_contig11651.1.1|Name=mRNA_C-tenellus_contig11651.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1799bp|location=Sequence derived from alignment at C-tenellus_contig11651:316..2114+ (Choristocarpus tenellus KU2346)
AGGACACGGGGTTATACCAAACGAGGACTAGAGGTAGACCTGAACGGGCA ACAGCATGTGCCAGTGCTCGGGCAAGAGACTAGACGGAGCGTCCAAGCAC AAGGCCCATATGAGACAGAGAGACTTGATGCAGCTGCTGAGCAGGTGCTG AATCGCCTCAAACGGGTAAGGAATCTCCACAAGGCAATGCCATTACATGC AGCACTCCTGAGCATATATATGAAAGTTGCAGGCATTAATTACTCTTTTC TATCCCTCCTCACCCTCCTCCATGCCACCCAAGCAAGCCCACAAGCTAAC CTCGTACCCCTTTTCCATTGTGCAATGATCCGTGGCGGAAGGTGGGACCC CGAGAATTCCATGCAGGTTACAGAGTCCACAAAAGTCCCTACGAGGGTGG AATTAATACCGGTTCTCCCTTCATGGATTGGTGGAAGAATCCTTATCTTG TGCGAGGCATTCCTAAGAACCAGGCAGAGCTCAGCAAGCCACTGAAAGAG GTATGCATTTTTTAAAATCCATGTATACCACATCTCTCCCTTGCAGCACA GGCGTATTTCAATGAAATTATGAACTGAGCAATTGTCTTGATTGGGTGAT GAATGAGAGGTCACCACCGAAAAGATACCCCTTCCTCAATCCACAAGTAA TATCAAGGCAACATAATCCATGCACTCCAGGACATCTTTGTGAACTTTGC AACTTCTCTGTTCTCGCTCCTGACTTTGTCTACCTCATTACCCTCACCCC TCACACATCACCCCAAAATGTATTTTACCCCCATTCTCCATTTCCTGCGT TGTTCATCATGACAGAGTTCCCTTGGGAAATACCCAGCAAAGCCATACTA TATTGCAGTTGGTGGCAACAAGTCCGCAGTGTTGCCAAATGGACGGTTTG ATGTCATTCTTGAGGCGGAGCAAACTGGAGGGGTGATCCGAAATGCACTT GGGCGTTCCAGACGGTCAGTCAAATCGGGTACCTGGTATTCATATTTGTG CTGTATAACAAACTCTTCCCGTGAGATCAAATTGTGCCACTTGAGTGGAG ACTTGTTGCCCCATGACTACAATTGTTTTTTTTGGCGCCGCTCATTGTAC CTTACACCAGTGCTGTTACATTGTCCAGCGTACTCCGAAATTGTATTCTT TGTCCAATGCTGTGCAATTTGAAATATTTTTGTTCTCTAAACGACATGCA CATTTCTATGTGCCCACAGAAGGAGGAATTTTCTTGGGGCTCCAAGCCAA CTCAATCACGCATGTTTCCCTGTCTGTTCTCAATCCTGAATATAATCATT GATAGGCCACCTGTTGCAACATACATCTTCATTGTGCCAACCTGACAACC TGAGACAAGAATGCCACCTATACAACAAGAAAGCACAGCCCACTGGCAGG AGTCAACTCCAACCCTGTAATAGTGACAAGCACCGAACCGAGCCTACACA AAACTACTCCTTTTTTTCACTGGTTTGTCACAAGTCGCCATAGCCCTTAT GTCAAATGATACTCACTTGACAACAGTTTCGATAATGGGACTGCCCAAGG CCCCATGCCAAGCTGGGTGTAGGACTTGCCTTTCCTCAAGCCAAAAACAA CTTTGGAATAGTGCCACATCTATTCCTCTAAATTCTCTCTGACCTCCTTT ATTGACTACTTCTCCCTGAAACAAAAATGCATAGATACGGAGTGCCAGAC ACATGTGATGTGGACGACCAGGTCTACCCTGGATCGACACTTGCCCACCC CCACCTTCCTGTCCCACCAAAAAAGCCTCCTTTGTTCAGCACGGCATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig11651:316..2114+

>mRNA_C-tenellus_contig11651.1.1 ID=mRNA_C-tenellus_contig11651.1.1|Name=mRNA_C-tenellus_contig11651.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=588bp|location=Sequence derived from alignment at C-tenellus_contig11651:316..2114+ (Choristocarpus tenellus KU2346)
AGGACACGGGGTTATACCAAACGAGGACTAGAGGTAGACCTGAACGGGCA
ACAGCATGTGCCAGTGCTCGGGCAAGAGACTAGACGGAGCGTCCAAGCAC
AAGGCCCATATGAGACAGAGAGACTTGATGCAGCTGCTGAGCAGGTGCTG
AATCGCCTCAAACGGGTGGGACCCCGAGAATTCCATGCAGGTTACAGAGT
CCACAAAAGTCCCTACGAGGGTGGAATTAATACCGGTTCTCCCTTCATGG
ATTGGTGGAAGAATCCTTATCTTGTGCGAGGCATTCCTAAGAACCAGGCA
GAGCTCAGCAAGCCACTGAAAGAGAGTTCCCTTGGGAAATACCCAGCAAA
GCCATACTATATTGCAGTTGGTGGCAACAAGTCCGCAGTGTTGCCAAATG
GACGGTTTGATGTCATTCTTGAGGCGGAGCAAACTGGAGGGGTGATCCGA
AATGCACTTGGGCGTTCCAGACGATACGGAGTGCCAGACACATGTGATGT
GGACGACCAGGTCTACCCTGGATCGACACTTGCCCACCCCCACCTTCCTG
TCCCACCAAAAAAGCCTCCTTTGTTCAGCACGGCATGA
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