mRNA_C-tenellus_contig11650.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11650.1.1
Unique NamemRNA_C-tenellus_contig11650.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11650.1.1 vs. uniprot
Match: A0A836C854_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C854_9STRA)

HSP 1 Score: 122 bits (307), Expect = 8.210e-28
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:  154 LLWQAYRWIEDSRDEYTQERLESLDDAFKLFRCHTIMNCSKTCPKHLNPGKAIAHIKKRVNAL 342
            +L QAYRWIEDSRDEYT+ERLE LDDAFKL+RCHTIMNCS+TCPKHLNPGKAIAHIKKR+ AL
Sbjct:  201 VLMQAYRWIEDSRDEYTRERLEQLDDAFKLYRCHTIMNCSQTCPKHLNPGKAIAHIKKRMMAL 263
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BLAST of mRNA_C-tenellus_contig11650.1.1 vs. uniprot
Match: D7FWF5_ECTSI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF5_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 8.690e-28
Identity = 55/63 (87.30%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:  154 LLWQAYRWIEDSRDEYTQERLESLDDAFKLFRCHTIMNCSKTCPKHLNPGKAIAHIKKRVNAL 342
            +L QAYRWI+DSRD+YT+ERLESLDDAFKLFRCHTIMNC+KTCPKHLNPGKAIA+IKKRV+AL
Sbjct:  218 VLMQAYRWIDDSRDDYTKERLESLDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 280
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BLAST of mRNA_C-tenellus_contig11650.1.1 vs. uniprot
Match: A0A835Z536_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z536_9STRA)

HSP 1 Score: 120 bits (301), Expect = 5.640e-27
Identity = 53/63 (84.13%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:  154 LLWQAYRWIEDSRDEYTQERLESLDDAFKLFRCHTIMNCSKTCPKHLNPGKAIAHIKKRVNAL 342
            +L QAYRWIEDSRDE+T+ERLE LDDAFKL+RCHTIMNCS+TCPKHLNPGKAIAHIKKR+ A+
Sbjct:  203 VLMQAYRWIEDSRDEFTRERLEQLDDAFKLYRCHTIMNCSQTCPKHLNPGKAIAHIKKRMMAI 265
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BLAST of mRNA_C-tenellus_contig11650.1.1 vs. uniprot
Match: A0A6H5JQA7_9PHAE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQA7_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.600e-26
Identity = 52/60 (86.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:  163 QAYRWIEDSRDEYTQERLESLDDAFKLFRCHTIMNCSKTCPKHLNPGKAIAHIKKRVNAL 342
            +AYRWI+DSRD+YT+ERLE LDDAFKLFRCHTIMNC+KTCPKHLNPGKAIA+IKKRV+AL
Sbjct:  185 EAYRWIDDSRDDYTKERLELLDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 244
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BLAST of mRNA_C-tenellus_contig11650.1.1 vs. uniprot
Match: A0A6U0WEA4_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0WEA4_9STRA)

HSP 1 Score: 118 bits (296), Expect = 6.140e-26
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:  124 TYMGKISLWYLLWQAYRWIEDSRDEYTQERLESLDDAFKLFRCHTIMNCSKTCPKHLNPGKAIAHIKKRVNAL 342
            TY+G      +L QAYRWIEDSRD  T+ER+E LDDAFKL+RCHTIMNCSKTCPKHLNPGKAIAH+K+RV AL
Sbjct:  235 TYLGPA----VLMQAYRWIEDSRDAITRERIEQLDDAFKLYRCHTIMNCSKTCPKHLNPGKAIAHVKQRVAAL 303
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BLAST of mRNA_C-tenellus_contig11650.1.1 vs. uniprot
Match: W7U0Z2_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0Z2_9STRA)

HSP 1 Score: 117 bits (293), Expect = 9.780e-26
Identity = 51/62 (82.26%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:  154 LLWQAYRWIEDSRDEYTQERLESLDDAFKLFRCHTIMNCSKTCPKHLNPGKAIAHIKKRVNA 339
            +L QAYRWIEDSRDEYT+ERLE+LDD+FKL+RCHTIMNC+K CPKHLNPG+AIAHIKKR+ A
Sbjct:  219 VLMQAYRWIEDSRDEYTKERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAA 280
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BLAST of mRNA_C-tenellus_contig11650.1.1 vs. uniprot
Match: A0A7S1UAJ7_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAJ7_9STRA)

HSP 1 Score: 115 bits (288), Expect = 8.710e-25
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:  118 AHTYMGKISLWYLLWQAYRWIEDSRDEYTQERLESLDDAFKLFRCHTIMNCSKTCPKHLNPGKAIAHIKKRVNAL 342
            A +Y+G      +L QA+RWIEDSRD  T++RLE LDDAFKL+RCHTIMNCSKTCPKHLNPGKAIAHIKKR+ +L
Sbjct:  242 ADSYLGPA----VLMQAFRWIEDSRDSITKKRLEQLDDAFKLYRCHTIMNCSKTCPKHLNPGKAIAHIKKRMASL 312
[Close]
BLAST of mRNA_C-tenellus_contig11650.1.1 vs. uniprot
Match: A0A7S0PK69_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PK69_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.340e-24
Identity = 49/60 (81.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:  154 LLWQAYRWIEDSRDEYTQERLESLDDAFKLFRCHTIMNCSKTCPKHLNPGKAIAHIKKRV 333
            +L QAYRWIEDSRDE+T+ERLE LDDAFKL+RCHTIMNC+K CPKHLNPGKAIA+IKK++
Sbjct:  207 VLMQAYRWIEDSRDEFTKERLEELDDAFKLYRCHTIMNCTKVCPKHLNPGKAIANIKKKL 266
[Close]
BLAST of mRNA_C-tenellus_contig11650.1.1 vs. uniprot
Match: A0A348AYS8_9EUKA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ophirina amphinema TaxID=2108040 RepID=A0A348AYS8_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 2.730e-24
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:  154 LLWQAYRWIEDSRDEYTQERLESLDDAFKLFRCHTIMNCSKTCPKHLNPGKAIAHIKKRVN 336
            +L QAYRWI DSRDEYT+ERL SL+DAFKL+RCHTIMNCSKTCPK+LNPGKAIA IKKR++
Sbjct:  174 VLLQAYRWIADSRDEYTKERLRSLNDAFKLYRCHTIMNCSKTCPKNLNPGKAIAEIKKRIS 234
[Close]
BLAST of mRNA_C-tenellus_contig11650.1.1 vs. uniprot
Match: A0A7S1B7X7_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B7X7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.860e-24
Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:  118 AHTYMGKISLWYLLWQAYRWIEDSRDEYTQERLESLDDAFKLFRCHTIMNCSKTCPKHLNPGKAIAHIKKRV 333
            A +Y+G      +L QAYRWIEDSRD+ T+ERL  LDDAFKL+RCHTIMNCSK CPKHLNPGKAIAHIKK++
Sbjct:  208 ADSYLGPA----VLMQAYRWIEDSRDQMTEERLAQLDDAFKLYRCHTIMNCSKVCPKHLNPGKAIAHIKKKL 275
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11650.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C854_9STRA8.210e-2887.30Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
D7FWF5_ECTSI8.690e-2887.30Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A835Z536_9STRA5.640e-2784.13Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A6H5JQA7_9PHAE1.600e-2686.67Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A6U0WEA4_9STRA6.140e-2675.34Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
W7U0Z2_9STRA9.780e-2682.26Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A7S1UAJ7_9STRA8.710e-2572.00Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A7S0PK69_9STRA2.340e-2481.67Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A348AYS8_9EUKA2.730e-2481.97Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A7S1B7X7_9STRA3.860e-2472.22Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11650contigC-tenellus_contig11650:659..2447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWF5
Preferred nameSDHB
PFAMsFer2_3,Fer4_17
Model size1789
Max annot lvl2759|Eukaryota
KEGG rclassRC00045
KEGG koko:K00235
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
Hectar predicted targeting categoryother localisation
GOsGO:0000104,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006105,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008177,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0048037,GO:0048038,GO:0048039,GO:0051536,GO:0051537,GO:0051538,GO:0051539,GO:0051540,GO:0055086,GO:0055114,GO:0070013,GO:0070469,GO:0071704,GO:0071944,GO:0072350,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Exons1
Evalue1.07e-33
EggNOG OGsCOG0479@1|root,KOG3049@2759|Eukaryota
EC1.3.5.1
Description3 iron, 4 sulfur cluster binding
Cds size246
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.3493116-UTR-C-tenellus_contig11650:658..7571680789188.3493116-UTR-C-tenellus_contig11650:658..757Choristocarpus tenellus KU2346UTRC-tenellus_contig11650 659..757 +
1680789188.3806374-UTR-C-tenellus_contig11650:1003..24471680789188.3806374-UTR-C-tenellus_contig11650:1003..2447Choristocarpus tenellus KU2346UTRC-tenellus_contig11650 1004..2447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.36346-CDS-C-tenellus_contig11650:757..10031680789188.36346-CDS-C-tenellus_contig11650:757..1003Choristocarpus tenellus KU2346CDSC-tenellus_contig11650 758..1003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11650.1.1prot_C-tenellus_contig11650.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11650 758..1003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11650.1.1

>prot_C-tenellus_contig11650.1.1 ID=prot_C-tenellus_contig11650.1.1|Name=mRNA_C-tenellus_contig11650.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=82bp
MHTHTHAHTYMGKISLWYLLWQAYRWIEDSRDEYTQERLESLDDAFKLFR
CHTIMNCSKTCPKHLNPGKAIAHIKKRVNAL*
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mRNA from alignment at C-tenellus_contig11650:659..2447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11650.1.1 ID=mRNA_C-tenellus_contig11650.1.1|Name=mRNA_C-tenellus_contig11650.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1789bp|location=Sequence derived from alignment at C-tenellus_contig11650:659..2447+ (Choristocarpus tenellus KU2346)
TGGAGTGGATTGGAAAGAACCAAGTGGGAATTTTGCTTCAATTTATTTCG
GGGGTTCTTCATTGAGACAGGTAGTGCAAACCTGCACCAACAAGCATTTA
TGCACACACACACACACGCACACACATATATGGGTAAAATTTCACTGTGG
TATCTCTTATGGCAGGCGTATCGTTGGATTGAAGACTCACGTGATGAGTA
CACCCAAGAGCGACTGGAGTCGCTGGATGACGCGTTCAAGCTCTTCCGCT
GCCATACCATCATGAACTGCTCCAAGACCTGTCCCAAGCACCTCAATCCC
GGAAAGGCCATCGCGCACATCAAGAAGCGTGTGAACGCATTGTAGGGGTT
TTGTATATGGGAGGCGACTGACTGCGCTGCTCGATGCTGAGGGGAAAAGC
GAACACCTTAGATATCGTTGCTGTTGCTAGTTATGCACAATCCAGGGTCT
ACTCTCAAAGCCTTTGTTTTGCAAAGACAAGCGGTGCCGTTTAATCCCAA
GTAGGTGTGGTTGGGGAAAGGTTTCGAAGTCTCTGAGGGGGCACACATGT
CTAGAGGGGGGAGGGCCCGTGTAGGACAAGCGGTTATGGAGAGGCAGGCG
GTGAGGTTGAGTGAGGGGACTGGCAGGGTTTTTGATTCGTGTTGGGCTTT
AAGAGTGGACTACTGTACATTGGCCTCTTTTGGTGGGACTTTTTTGAGGT
AATTAATTATGAATTAGTCCTGCAATTGTAGGTTCTTACTTGATACTTGG
AAGTGTATTTTCCCCATGAGATTACGTATCTCGTTTCTATTTTACAACTG
CTCTTGTTGGGTATATTTTGCTAAGAAAGATGCTTGTGTGAGGGTGTGGC
CCCCTGTAGGTAACGCTGTTTTTTGTTCAAAGGGGAGTGTTTCGCTGTAC
TGCTATGTACTGGAGAAGTACGTATAGTAGTTCTCTAGTGAGACAGTGAT
AATGTAAGCTACTTGTACACAGCACTGTGGGAGGGACAAGGCTGCGGATA
GGTAACTAACTGCCCTGGAGGGTAATTTGTGTAACGGAATGTGCAGACTG
TATGTAGTGAGAGAGTGGTATGCACTGCCCCTCTCAGATAAGGTCACACA
CTATACACAGGGAGTCGGATGTGATATACACCACTGCGGAGTCACCAGTG
CATGGTCAGAAAGCTGGAACGGTCTGTGCTGAAACTTCAGCAAGGGGATC
ACTAAATTCTCAACAGTCTGCTCTGCGGGCTCAGTGCAGAGTTTGCCAAC
CCTTGTTCAAAGGAAATGTTTCGGAGCACTGAAAGTATTTGAGATACGAA
TGAAGGATCTTACTCCAGAACTGCAATGTACTTGAGTATACTTCAGAGTA
CCATTCATATAATCTGTAGGTTTGATATTACATACTTTGGAGTATTGTTT
TCATTAATTCGAGGCAAACAAATACTGAGTGAGACAATAGTAGTGGTTGT
GTGCACACAACGGTGGGAAAGGTGATCGAGGTATCAAGCATGTGGTCTCA
CCTCTCCAGATGATTTTCGAGGTTTAGGTATGCAGGAACTGTGGGCACAC
ACAGTATGTTGATGTGGGCACACACTGCAACAAGCAGACACCACTCACTC
CAACCGACACAGTTGTCACTCAACTTGCAAAATATGCAGTCTCTGCTCAA
TTTTTTTATGTAGCTTACCTTTCAACAAGGCGACTTTCGCCCATGCAGTG
CTGCATGAACCCAACAGGAATCCTTCACCTGCTTCCTATCCGAAGGCAGT
ACAGAATTTTAGCTACAACAATAATACTGTCTCTCTCCA
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Coding sequence (CDS) from alignment at C-tenellus_contig11650:659..2447+

>mRNA_C-tenellus_contig11650.1.1 ID=mRNA_C-tenellus_contig11650.1.1|Name=mRNA_C-tenellus_contig11650.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=246bp|location=Sequence derived from alignment at C-tenellus_contig11650:659..2447+ (Choristocarpus tenellus KU2346)
ATGCACACACACACACACGCACACACATATATGGGTAAAATTTCACTGTG
GTATCTCTTATGGCAGGCGTATCGTTGGATTGAAGACTCACGTGATGAGT
ACACCCAAGAGCGACTGGAGTCGCTGGATGACGCGTTCAAGCTCTTCCGC
TGCCATACCATCATGAACTGCTCCAAGACCTGTCCCAAGCACCTCAATCC
CGGAAAGGCCATCGCGCACATCAAGAAGCGTGTGAACGCATTGTAG
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