mRNA_C-tenellus_contig1165.7.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1165.7.1
Unique NamemRNA_C-tenellus_contig1165.7.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1165.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1165contigC-tenellus_contig1165:8675..9205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size531
Hectar predicted targeting categorysignal peptide
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.1507215-UTR-C-tenellus_contig1165:8674..87341680789188.1507215-UTR-C-tenellus_contig1165:8674..8734Choristocarpus tenellus KU2346UTRC-tenellus_contig1165 8675..8734 -
1680789188.1698005-UTR-C-tenellus_contig1165:9097..92051680789188.1698005-UTR-C-tenellus_contig1165:9097..9205Choristocarpus tenellus KU2346UTRC-tenellus_contig1165 9098..9205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.1600661-CDS-C-tenellus_contig1165:8734..90971680789188.1600661-CDS-C-tenellus_contig1165:8734..9097Choristocarpus tenellus KU2346CDSC-tenellus_contig1165 8735..9097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1165.7.1prot_C-tenellus_contig1165.7.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1165 8735..9097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1165.7.1

>prot_C-tenellus_contig1165.7.1 ID=prot_C-tenellus_contig1165.7.1|Name=mRNA_C-tenellus_contig1165.7.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=121bp
MSSACWPLSLRLFACCLLQRLQESVWSMTHLCRSCASTQAILERADKSLM
EDILHLCTLHSVLKNISTGWSITEAEVQGFHAPFYSCGLEGAFLPTLELL
GPMQHLAHCPLISMYAVLSP*
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mRNA from alignment at C-tenellus_contig1165:8675..9205-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1165.7.1 ID=mRNA_C-tenellus_contig1165.7.1|Name=mRNA_C-tenellus_contig1165.7.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=531bp|location=Sequence derived from alignment at C-tenellus_contig1165:8675..9205- (Choristocarpus tenellus KU2346)
ATGTTGCAGTTAATGCTTTTAGTTTCACTTTTAATTCTATGTTTTGTACT
TAGGATATCGATTGATAGTTGTATCAGTGTCTTGTAGTATGGAGGCAATC
AGAGGGCTATGAGCTCTGCTTGCTGGCCTCTCTCACTGCGATTGTTTGCA
TGTTGTCTGCTCCAAAGATTGCAAGAGAGTGTTTGGAGCATGACACACCT
ATGTCGTTCATGTGCAAGCACTCAAGCAATATTGGAGAGAGCCGACAAGA
GCTTGATGGAGGACATCTTACACCTGTGTACACTGCATTCAGTGTTGAAG
AATATCAGTACAGGGTGGTCTATTACTGAGGCAGAAGTGCAGGGATTTCA
TGCGCCATTTTACAGCTGTGGTCTTGAGGGAGCTTTCCTCCCAACTCTTG
AGCTTCTGGGCCCCATGCAACACCTTGCTCATTGCCCTCTCATCTCTATG
TACGCTGTGTTGTCCCCATAATGACACCAATCCACGTAGTAGACCAAGCA
TAATGAGTGGATGCAGCGTACAGACGGCCCT
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Coding sequence (CDS) from alignment at C-tenellus_contig1165:8675..9205-

>mRNA_C-tenellus_contig1165.7.1 ID=mRNA_C-tenellus_contig1165.7.1|Name=mRNA_C-tenellus_contig1165.7.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=363bp|location=Sequence derived from alignment at C-tenellus_contig1165:8675..9205- (Choristocarpus tenellus KU2346)
ATGAGCTCTGCTTGCTGGCCTCTCTCACTGCGATTGTTTGCATGTTGTCT
GCTCCAAAGATTGCAAGAGAGTGTTTGGAGCATGACACACCTATGTCGTT
CATGTGCAAGCACTCAAGCAATATTGGAGAGAGCCGACAAGAGCTTGATG
GAGGACATCTTACACCTGTGTACACTGCATTCAGTGTTGAAGAATATCAG
TACAGGGTGGTCTATTACTGAGGCAGAAGTGCAGGGATTTCATGCGCCAT
TTTACAGCTGTGGTCTTGAGGGAGCTTTCCTCCCAACTCTTGAGCTTCTG
GGCCCCATGCAACACCTTGCTCATTGCCCTCTCATCTCTATGTACGCTGT
GTTGTCCCCATAA
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