mRNA_C-tenellus_contig11644.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11644.1.2
Unique NamemRNA_C-tenellus_contig11644.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: D8LGH0_ECTSI (AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGH0_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 3.810e-45
Identity = 84/102 (82.35%), Postives = 93/102 (91.18%), Query Frame = 1
Query:    1 MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGE-WYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEVFL 303
            MSIRLRQLI+KVR+CKTAAEER+VIA E ALIRTAFKEG+ P RARNVA+LLY+HM GE  YPSHFGQMEC+KLIASPGFP+KRVGYL LMLLLQEKDEV +
Sbjct:    1 MSIRLRQLIRKVRSCKTAAEERAVIATEGALIRTAFKEGNDPTRARNVARLLYMHMFGEDGYPSHFGQMECIKLIASPGFPDKRVGYLGLMLLLQEKDEVLM 102          
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A061RPQ4_9CHLO (Ap-1 complex subunit gamma-2-like n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RPQ4_9CHLO)

HSP 1 Score: 143 bits (361), Expect = 3.060e-41
Identity = 75/101 (74.26%), Postives = 84/101 (83.17%), Query Frame = 1
Query:    1 MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEVFL 303
            MSI+LR LIK VR  KTAAEERSVIAKE A +RTAFKE D   R RNVAKL+YIHMLG  YP+HFGQMEC+KLIASP +PEKR+GYLALMLLL E+ EV +
Sbjct:    1 MSIKLRDLIKAVRQAKTAAEERSVIAKESAALRTAFKEQDSVYRHRNVAKLMYIHMLG--YPAHFGQMECLKLIASPSYPEKRIGYLALMLLLDERQEVLM 99          
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A7S3XHK3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XHK3_HETAK)

HSP 1 Score: 145 bits (367), Expect = 5.520e-40
Identity = 76/101 (75.25%), Postives = 88/101 (87.13%), Query Frame = 1
Query:    1 MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEVFL 303
            MS+RLR+LI+ VRACKTAAEER+VI++ECALIRTA KE +   R RNVAKLLYIHMLG  YPSH+GQME +KLIASPGFPEKR+GYL LMLLL EK+EV +
Sbjct:    1 MSMRLRELIRAVRACKTAAEERAVISQECALIRTAIKEENEAMRHRNVAKLLYIHMLG--YPSHWGQMEALKLIASPGFPEKRMGYLTLMLLLTEKEEVLM 99          
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A7C9DDW2_OPUST (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DDW2_OPUST)

HSP 1 Score: 136 bits (343), Expect = 2.010e-39
Identity = 67/98 (68.37%), Postives = 80/98 (81.63%), Query Frame = 1
Query:   10 RLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEVFL 303
            RLR +I+ +RACKTAAEER+V+ KECA IR A  E D   R RN+AKL++IHMLG  YP+HFGQMEC+KLIASPGFPEKR+GYL LMLLL E+ EV +
Sbjct:    9 RLRDMIRAIRACKTAAEERAVVRKECAAIRAAISENDPEYRHRNMAKLMFIHMLG--YPTHFGQMECLKLIASPGFPEKRLGYLGLMLLLDERQEVLM 104          
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A7S2WL96_9STRA (AP-1 complex subunit gamma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WL96_9STRA)

HSP 1 Score: 147 bits (371), Expect = 5.720e-39
Identity = 77/99 (77.78%), Postives = 86/99 (86.87%), Query Frame = 1
Query:    1 MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEV 297
            MSI+LR+LI+ VRACKTA EER+VI+KECALIRTAFK+ +   R RNVAKLLYIHMLG  YPSHFGQMEC+KLIASP FPEKR+GYLALMLLL E  EV
Sbjct:   17 MSIKLRELIRAVRACKTAQEERAVISKECALIRTAFKDNNIQFRHRNVAKLLYIHMLG--YPSHFGQMECLKLIASPNFPEKRIGYLALMLLLNETAEV 113          
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A482RW17_9ARCH (Adaptin_N domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RW17_9ARCH)

HSP 1 Score: 138 bits (347), Expect = 1.170e-38
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 1
Query:    1 MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEV 297
            MSI+LR LI+ VRACKTAAEER+VI+KECALIRTA KE D   R RNVAKLL+IHMLG  YP+HFGQMEC+KLI++  FP+KRVGYL L LLL E+ EV
Sbjct:    1 MSIKLRDLIRAVRACKTAAEERAVISKECALIRTAIKEEDEQFRQRNVAKLLFIHMLG--YPTHFGQMECLKLISAQSFPDKRVGYLGLTLLLNEQTEV 97          
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A1D6LLP5_MAIZE (AP-1 complex subunit gamma-1 n=2 Tax=PACMAD clade TaxID=147370 RepID=A0A1D6LLP5_MAIZE)

HSP 1 Score: 134 bits (337), Expect = 1.920e-38
Identity = 65/98 (66.33%), Postives = 80/98 (81.63%), Query Frame = 1
Query:   10 RLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEVFL 303
            RLR +I+ +RACKTAAEER+V+ +ECA IR A  EGD   R RN+AKL++IHMLG  YP+HFGQMEC+KLIA+ GFPEKR+GYL LMLLL E+ EV +
Sbjct:   13 RLRDMIRAIRACKTAAEERAVVRRECAAIRAAISEGDQDYRHRNMAKLMFIHMLG--YPTHFGQMECLKLIAAAGFPEKRIGYLGLMLLLDERQEVLM 108          
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: K0T3C6_THAOC (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T3C6_THAOC)

HSP 1 Score: 134 bits (337), Expect = 2.160e-38
Identity = 67/101 (66.34%), Postives = 85/101 (84.16%), Query Frame = 1
Query:    1 MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEVFL 303
            MS++LR LI++VRACKTAAEER+VIAKE A+IRTA +E     R RNVAKLL++HMLG  YP+HFGQ+EC+KL+ASP FPEKR+GYL +MLLL E+ +V +
Sbjct:    1 MSLKLRDLIRQVRACKTAAEERAVIAKESAMIRTAIREEQEHYRHRNVAKLLFMHMLG--YPTHFGQLECMKLVASPHFPEKRIGYLGMMLLLSEQADVLM 99          
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A425C4M0_9STRA (Adaptin_N domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425C4M0_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.870e-38
Identity = 73/99 (73.74%), Postives = 84/99 (84.85%), Query Frame = 1
Query:    1 MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEV 297
            MSI+LR LI+ VRACKTAAEER+VIAKE ALIRTAFK+ D   R RNVAKLL+IHMLG  YPSHFGQMEC+KLIA+  F EKR+GYL LMLLL +++EV
Sbjct:    1 MSIKLRDLIRNVRACKTAAEERAVIAKESALIRTAFKDNDKQYRHRNVAKLLFIHMLG--YPSHFGQMECLKLIAANNFSEKRIGYLGLMLLLTDQEEV 97          
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A0D2LX33_9CHLO (AP-1 complex subunit gamma-1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LX33_9CHLO)

HSP 1 Score: 135 bits (339), Expect = 2.940e-38
Identity = 70/100 (70.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:    4 SIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEVFL 303
            SIRLR+LI+ VRACKTAAEER VIAKE A +R AFK+ D   R RNVAKL+YIHMLG  YP+HFGQME +KLIA+ GFPEKR+GYL LM+LL E+ EV +
Sbjct:   22 SIRLRELIRAVRACKTAAEERDVIAKESAALREAFKDQDSRYRHRNVAKLMYIHMLG--YPTHFGQMETLKLIAANGFPEKRIGYLGLMILLDERHEVLM 119          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGH0_ECTSI3.810e-4582.35AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxI... [more]
A0A061RPQ4_9CHLO3.060e-4174.26Ap-1 complex subunit gamma-2-like n=2 Tax=Tetrasel... [more]
A0A7S3XHK3_HETAK5.520e-4075.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7C9DDW2_OPUST2.010e-3968.37Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A7S2WL96_9STRA5.720e-3977.78AP-1 complex subunit gamma n=1 Tax=Rhizochromulina... [more]
A0A482RW17_9ARCH1.170e-3872.73Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A1D6LLP5_MAIZE1.920e-3866.33AP-1 complex subunit gamma-1 n=2 Tax=PACMAD clade ... [more]
K0T3C6_THAOC2.160e-3866.34Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A425C4M0_9STRA2.870e-3873.74Adaptin_N domain-containing protein n=1 Tax=Aphano... [more]
A0A0D2LX33_9CHLO2.940e-3870.00AP-1 complex subunit gamma-1 n=1 Tax=Monoraphidium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11644contigC-tenellus_contig11644:3669..5051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGH0
PFAMsAdaptin_N,Alpha_adaptinC2
Model size312
Max annot lvl2759|Eukaryota
KEGG koko:K11279,ko:K12391
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.25e-46
EggNOG OGsCOG4354@1|root,KOG1062@2759|Eukaryota
Descriptionintracellular protein transport
Cds size312
COG categoryG
BRITEko00000,ko00001,ko03036,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.0347528-CDS-C-tenellus_contig11644:3668..38461680789188.0347528-CDS-C-tenellus_contig11644:3668..3846Choristocarpus tenellus KU2346CDSC-tenellus_contig11644 3669..3846 +
1680789188.0486124-CDS-C-tenellus_contig11644:4917..50511680789188.0486124-CDS-C-tenellus_contig11644:4917..5051Choristocarpus tenellus KU2346CDSC-tenellus_contig11644 4918..5051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11644.1.2prot_C-tenellus_contig11644.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11644 3669..5051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11644.1.2

>prot_C-tenellus_contig11644.1.2 ID=prot_C-tenellus_contig11644.1.2|Name=mRNA_C-tenellus_contig11644.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=104bp
MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAK
LLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEVF
LRH*
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mRNA from alignment at C-tenellus_contig11644:3669..5051+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11644.1.2 ID=mRNA_C-tenellus_contig11644.1.2|Name=mRNA_C-tenellus_contig11644.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1383bp|location=Sequence derived from alignment at C-tenellus_contig11644:3669..5051+ (Choristocarpus tenellus KU2346)
ATGTCGATCAGACTGCGGCAGCTGATTAAGAAGGTGCGAGCATGCAAGAC TGCCGCAGAGGAACGATCTGTGATTGCAAAGGAATGTGCCCTTATCCGCA CAGCGTTCAAGGAAGGGGATGGTCCAAACAGGGCCCGAAACGTGGCCAAG TTGCTCTACATCCATATGCTGGGTGAGTGTCATATTTGTACCATCATGTA CATGAAGTAGTATCAATAGTACTACTACTATTTGTGAATGTTGACCAAAA TTTTTAGATTTATAAGCCAACAGTATTGAAGAGGTTTCCTAACATTATTC CACCTTCACTTGGAAGGATAAAAACCTTAAAATGGATGCATCTGGAAGGA TGTACTACATACACCACTGCAGTACCTTGTTTGAAGTATCTGAAAGGATG TACCTGATCAGATATTTCTGGGGGAGTCTATTTATTGCTCGGATTGTGTT TTCCTGCAGCATTTCTCTGTGCTGTTTTTGTTGTCCTTTGTTGCTGTCAG ATTGTATTACCAACATAAGCATATCTACCTACAATTATGTCCATGCTGTG CACTTGCCCACACTCACACACACACACGATCTGACACAACTCACCCCAAT AATTTGTGGTATATCTATTGCACATCAATGTGTTCCCCCCGTTGATCACT TCCTGCAAATTACTTGAGCTGAGGAAGTGAACTCTGTTAACACGGTATAC TTCTCAGACATGGTTGTTGGGGATTTTTTTCTTTTTATCCAATCACGATT ACACCCTTCTCTCTACTACGGTATGCCTAGCTCTAACCCCGAGTACTGTA GTGCCTTATACAAAATATATATATATATTTTTGCGATTTCTGTGATTACT AGAGTGCCCTATACAAAAAAAATACTTTTTTTGGGGGACTTTCTCATCAA ATGCCATTACAACCTTGCCACCCACCGCAAGAGGGAAATTCTCTCCTGGC TCTATTATGCCAGCTGGATAAAAGAGATTAATATTTTTTTTGTGGTCTCT CTCCCCCCCTCCCCCCCGCCCGCCCATCATCGTTTTGTTGTCCTCTGCAC TGAACAATTGCCAAGCGGATTTCATCTCCAGAGGTTGATTCGTATCGACA AAGTAACTGTTTTGTTTTGCATAATCACTTTCCTCACTGTATCCCTTGCC TCGCGCCGCCTTCTTGCTTCTGCAAAACCTCATTTGGTGCCATACAACAT TTGGTTTTTCGGTGCTTGTGTGGGGTGTTGATGGTGTGTATGTATGCAGG GTATCCCTCCCACTTCGGACAGATGGAGTGTGTCAAGCTCATTGCAAGCC CTGGGTTTCCCGAGAAGAGGGTGGGATACCTGGCGCTTATGCTTCTGCTC CAGGAGAAAGATGAGGTGTTTTTAAGACATTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig11644:3669..5051+

>mRNA_C-tenellus_contig11644.1.2 ID=mRNA_C-tenellus_contig11644.1.2|Name=mRNA_C-tenellus_contig11644.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=312bp|location=Sequence derived from alignment at C-tenellus_contig11644:3669..5051+ (Choristocarpus tenellus KU2346)
ATGTCGATCAGACTGCGGCAGCTGATTAAGAAGGTGCGAGCATGCAAGAC
TGCCGCAGAGGAACGATCTGTGATTGCAAAGGAATGTGCCCTTATCCGCA
CAGCGTTCAAGGAAGGGGATGGTCCAAACAGGGCCCGAAACGTGGCCAAG
TTGCTCTACATCCATATGCTGGGTGAGTGGTATCCCTCCCACTTCGGACA
GATGGAGTGTGTCAAGCTCATTGCAAGCCCTGGGTTTCCCGAGAAGAGGG
TGGGATACCTGGCGCTTATGCTTCTGCTCCAGGAGAAAGATGAGGTGTTT
TTAAGACATTAG
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