mRNA_C-tenellus_contig11644.1.2 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: D8LGH0_ECTSI (AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGH0_ECTSI) HSP 1 Score: 164 bits (416), Expect = 3.810e-45 Identity = 84/102 (82.35%), Postives = 93/102 (91.18%), Query Frame = 1 Query: 1 MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGE-WYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEVFL 303 MSIRLRQLI+KVR+CKTAAEER+VIA E ALIRTAFKEG+ P RARNVA+LLY+HM GE YPSHFGQMEC+KLIASPGFP+KRVGYL LMLLLQEKDEV + Sbjct: 1 MSIRLRQLIRKVRSCKTAAEERAVIATEGALIRTAFKEGNDPTRARNVARLLYMHMFGEDGYPSHFGQMECIKLIASPGFPDKRVGYLGLMLLLQEKDEVLM 102
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A061RPQ4_9CHLO (Ap-1 complex subunit gamma-2-like n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RPQ4_9CHLO) HSP 1 Score: 143 bits (361), Expect = 3.060e-41 Identity = 75/101 (74.26%), Postives = 84/101 (83.17%), Query Frame = 1 Query: 1 MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEVFL 303 MSI+LR LIK VR KTAAEERSVIAKE A +RTAFKE D R RNVAKL+YIHMLG YP+HFGQMEC+KLIASP +PEKR+GYLALMLLL E+ EV + Sbjct: 1 MSIKLRDLIKAVRQAKTAAEERSVIAKESAALRTAFKEQDSVYRHRNVAKLMYIHMLG--YPAHFGQMECLKLIASPSYPEKRIGYLALMLLLDERQEVLM 99
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A7S3XHK3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XHK3_HETAK) HSP 1 Score: 145 bits (367), Expect = 5.520e-40 Identity = 76/101 (75.25%), Postives = 88/101 (87.13%), Query Frame = 1 Query: 1 MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEVFL 303 MS+RLR+LI+ VRACKTAAEER+VI++ECALIRTA KE + R RNVAKLLYIHMLG YPSH+GQME +KLIASPGFPEKR+GYL LMLLL EK+EV + Sbjct: 1 MSMRLRELIRAVRACKTAAEERAVISQECALIRTAIKEENEAMRHRNVAKLLYIHMLG--YPSHWGQMEALKLIASPGFPEKRMGYLTLMLLLTEKEEVLM 99
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A7C9DDW2_OPUST (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DDW2_OPUST) HSP 1 Score: 136 bits (343), Expect = 2.010e-39 Identity = 67/98 (68.37%), Postives = 80/98 (81.63%), Query Frame = 1 Query: 10 RLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEVFL 303 RLR +I+ +RACKTAAEER+V+ KECA IR A E D R RN+AKL++IHMLG YP+HFGQMEC+KLIASPGFPEKR+GYL LMLLL E+ EV + Sbjct: 9 RLRDMIRAIRACKTAAEERAVVRKECAAIRAAISENDPEYRHRNMAKLMFIHMLG--YPTHFGQMECLKLIASPGFPEKRLGYLGLMLLLDERQEVLM 104
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A7S2WL96_9STRA (AP-1 complex subunit gamma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WL96_9STRA) HSP 1 Score: 147 bits (371), Expect = 5.720e-39 Identity = 77/99 (77.78%), Postives = 86/99 (86.87%), Query Frame = 1 Query: 1 MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEV 297 MSI+LR+LI+ VRACKTA EER+VI+KECALIRTAFK+ + R RNVAKLLYIHMLG YPSHFGQMEC+KLIASP FPEKR+GYLALMLLL E EV Sbjct: 17 MSIKLRELIRAVRACKTAQEERAVISKECALIRTAFKDNNIQFRHRNVAKLLYIHMLG--YPSHFGQMECLKLIASPNFPEKRIGYLALMLLLNETAEV 113
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A482RW17_9ARCH (Adaptin_N domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RW17_9ARCH) HSP 1 Score: 138 bits (347), Expect = 1.170e-38 Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 1 Query: 1 MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEV 297 MSI+LR LI+ VRACKTAAEER+VI+KECALIRTA KE D R RNVAKLL+IHMLG YP+HFGQMEC+KLI++ FP+KRVGYL L LLL E+ EV Sbjct: 1 MSIKLRDLIRAVRACKTAAEERAVISKECALIRTAIKEEDEQFRQRNVAKLLFIHMLG--YPTHFGQMECLKLISAQSFPDKRVGYLGLTLLLNEQTEV 97
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A1D6LLP5_MAIZE (AP-1 complex subunit gamma-1 n=2 Tax=PACMAD clade TaxID=147370 RepID=A0A1D6LLP5_MAIZE) HSP 1 Score: 134 bits (337), Expect = 1.920e-38 Identity = 65/98 (66.33%), Postives = 80/98 (81.63%), Query Frame = 1 Query: 10 RLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEVFL 303 RLR +I+ +RACKTAAEER+V+ +ECA IR A EGD R RN+AKL++IHMLG YP+HFGQMEC+KLIA+ GFPEKR+GYL LMLLL E+ EV + Sbjct: 13 RLRDMIRAIRACKTAAEERAVVRRECAAIRAAISEGDQDYRHRNMAKLMFIHMLG--YPTHFGQMECLKLIAAAGFPEKRIGYLGLMLLLDERQEVLM 108
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: K0T3C6_THAOC (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T3C6_THAOC) HSP 1 Score: 134 bits (337), Expect = 2.160e-38 Identity = 67/101 (66.34%), Postives = 85/101 (84.16%), Query Frame = 1 Query: 1 MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEVFL 303 MS++LR LI++VRACKTAAEER+VIAKE A+IRTA +E R RNVAKLL++HMLG YP+HFGQ+EC+KL+ASP FPEKR+GYL +MLLL E+ +V + Sbjct: 1 MSLKLRDLIRQVRACKTAAEERAVIAKESAMIRTAIREEQEHYRHRNVAKLLFMHMLG--YPTHFGQLECMKLVASPHFPEKRIGYLGMMLLLSEQADVLM 99
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A425C4M0_9STRA (Adaptin_N domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425C4M0_9STRA) HSP 1 Score: 139 bits (350), Expect = 2.870e-38 Identity = 73/99 (73.74%), Postives = 84/99 (84.85%), Query Frame = 1 Query: 1 MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEV 297 MSI+LR LI+ VRACKTAAEER+VIAKE ALIRTAFK+ D R RNVAKLL+IHMLG YPSHFGQMEC+KLIA+ F EKR+GYL LMLLL +++EV Sbjct: 1 MSIKLRDLIRNVRACKTAAEERAVIAKESALIRTAFKDNDKQYRHRNVAKLLFIHMLG--YPSHFGQMECLKLIAANNFSEKRIGYLGLMLLLTDQEEV 97
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Match: A0A0D2LX33_9CHLO (AP-1 complex subunit gamma-1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LX33_9CHLO) HSP 1 Score: 135 bits (339), Expect = 2.940e-38 Identity = 70/100 (70.00%), Postives = 82/100 (82.00%), Query Frame = 1 Query: 4 SIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKLLYIHMLGEWYPSHFGQMECVKLIASPGFPEKRVGYLALMLLLQEKDEVFL 303 SIRLR+LI+ VRACKTAAEER VIAKE A +R AFK+ D R RNVAKL+YIHMLG YP+HFGQME +KLIA+ GFPEKR+GYL LM+LL E+ EV + Sbjct: 22 SIRLRELIRAVRACKTAAEERDVIAKESAALREAFKDQDSRYRHRNVAKLMYIHMLG--YPTHFGQMETLKLIAANGFPEKRIGYLGLMILLDERHEVLM 119 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11644.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig11644.1.2 >prot_C-tenellus_contig11644.1.2 ID=prot_C-tenellus_contig11644.1.2|Name=mRNA_C-tenellus_contig11644.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=104bp MSIRLRQLIKKVRACKTAAEERSVIAKECALIRTAFKEGDGPNRARNVAKback to top mRNA from alignment at C-tenellus_contig11644:3669..5051+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig11644.1.2 ID=mRNA_C-tenellus_contig11644.1.2|Name=mRNA_C-tenellus_contig11644.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1383bp|location=Sequence derived from alignment at C-tenellus_contig11644:3669..5051+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig11644:3669..5051+ >mRNA_C-tenellus_contig11644.1.2 ID=mRNA_C-tenellus_contig11644.1.2|Name=mRNA_C-tenellus_contig11644.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=312bp|location=Sequence derived from alignment at C-tenellus_contig11644:3669..5051+ (Choristocarpus tenellus KU2346)back to top |