mRNA_C-tenellus_contig11643.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11643.1.1
Unique NamemRNA_C-tenellus_contig11643.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11643.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11643contigC-tenellus_contig11643:155..2850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1498
Hectar predicted targeting categorysignal peptide
Exons3
Cds size1167
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.9608052-UTR-C-tenellus_contig11643:154..3481680789187.9608052-UTR-C-tenellus_contig11643:154..348Choristocarpus tenellus KU2346UTRC-tenellus_contig11643 155..348 -
1680789188.0001988-UTR-C-tenellus_contig11643:2713..28501680789188.0001988-UTR-C-tenellus_contig11643:2713..2850Choristocarpus tenellus KU2346UTRC-tenellus_contig11643 2714..2850 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.971858-CDS-C-tenellus_contig11643:348..7771680789187.971858-CDS-C-tenellus_contig11643:348..777Choristocarpus tenellus KU2346CDSC-tenellus_contig11643 349..777 -
1680789187.9801843-CDS-C-tenellus_contig11643:1578..18871680789187.9801843-CDS-C-tenellus_contig11643:1578..1887Choristocarpus tenellus KU2346CDSC-tenellus_contig11643 1579..1887 -
1680789187.9913177-CDS-C-tenellus_contig11643:2284..27131680789187.9913177-CDS-C-tenellus_contig11643:2284..2713Choristocarpus tenellus KU2346CDSC-tenellus_contig11643 2285..2713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11643.1.1prot_C-tenellus_contig11643.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11643 349..2713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11643.1.1

>prot_C-tenellus_contig11643.1.1 ID=prot_C-tenellus_contig11643.1.1|Name=mRNA_C-tenellus_contig11643.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=389bp
MGSTLGGASQRTVHRRHLCVCVSGLLLCLVLQLTVAYAPSLQCNQFEVSA
PVNHAYTPNGFAWVTSSISPAPQRGRMTRLCPPTLRLSTFSRDSFTGQIP
AYQGWALRSALRVNGPSHLLLHGGSNQASSDKVSRQDRVLEAEVVSAVTK
AAVEVAVDQAAATAATEVTSDGTTDPSRQVNKRRALSRVFHALARRWSLG
GSGLDHGELVNRELKETGNEIGRDGGSWDRRVVHARNTTFATASTQLVRG
GSVASVDTEDFNQDSSGRTISTQQDTRVKDDEAELVAGVMVDGYWYPSAD
VASAAVKGRVGVTATNSAVTANSAVTAAAARDGEVGLHAHERKEWRPWWR
WNLVSLNIEACRTGAIERTLRGVVTEVGKNIFCFVVGD*
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mRNA from alignment at C-tenellus_contig11643:155..2850-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11643.1.1 ID=mRNA_C-tenellus_contig11643.1.1|Name=mRNA_C-tenellus_contig11643.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2696bp|location=Sequence derived from alignment at C-tenellus_contig11643:155..2850- (Choristocarpus tenellus KU2346)
CTTGACAGTAGAAGTTGTAGTAGTACAAGCAGTGAAGACTATACCTGCTG
TTCGAGAGTTTAACTCTACACCTGATCACACGTGATCTGTGCGTGTTTCT
TTCGTAGAGGGGGCTGGAGCCCTGGCTCTTGACTTCAATGGGAAGCACCC
TGGGGGGTGCTTCCCAGAGGACTGTCCATCGTAGACACCTCTGTGTTTGC
GTCTCAGGACTTTTACTGTGCTTGGTTCTTCAACTCACTGTGGCATATGC
CCCTAGCCTCCAATGTAATCAGTTCGAAGTCTCTGCGCCTGTGAATCATG
CTTATACTCCGAATGGATTTGCGTGGGTTACGTCTTCGATCTCTCCCGCA
CCTCAACGAGGACGCATGACAAGACTGTGCCCACCAACTCTCAGGCTGTC
CACGTTCTCCAGAGACAGCTTCACAGGCCAGATACCTGCCTATCAAGGAT
GGGCCTTGCGCAGTGCATTGCGTGTCAATGGACCCTCCCACTTACTGTTG
CACGGAGGGTCGAACCAGGCCTCTAGCGACAAGGTTTCTAGACAAGATAG
AGTGCTCGAAGCTGAGGTGGGAAGAAACCCATTTTTTTTGCTGTCTGTAC
CTGTTAGCCATAGAGCAATGAACCAGGGTAATGCAGGTGTTGTTTTTGCA
ATCCAGGGGGCTTAGGCTAGATAGTGGTTGTTATAGTGGTCCATTTGATG
ATACAACTGGGGGTCGACTTGCCATCAGCATCTCATCTTGTGTCTTTCTG
CCCTGTATACTCCCTTCGGCCTTTCGCCCTTTTACTGGCATCCTGGGTGA
AATGACATGCGAAAAAGAAGGATATGGTGTCTGCAGACTCCAGTTAATCA
GTCAGGGAAGACAAGCAACACACGAGCGAACGTCGTGTCTTGTCCCTCCT
CTCACCTCCTGCAAGCCATCTTTTCCTCCCGTTGTTTTTTTTCCTCACCA
TCGCCACCTGCAGGTTGTTAGTGCTGTGACCAAAGCTGCGGTCGAGGTTG
CGGTTGATCAGGCCGCCGCTACTGCTGCAACTGAAGTGACTAGCGACGGG
ACAACTGACCCTTCCCGACAAGTCAACAAACGCAGAGCCCTTTCCAGAGT
TTTCCATGCCTTGGCCAGGCGATGGAGCCTTGGGGGCAGTGGCCTTGACC
ATGGTGAGCTTGTCAATCGCGAATTAAAAGAGACAGGAAACGAGATCGGT
AGGGATGGGGGTTCCTGGGACAGGCGGGTGGTTCATGCTAGAAATACCAC
TTTCGCCACTGCTTCAACGCAGGTGAGAGGTTACCCCTGAACCACCCCTC
CCCCCCGCTACCCTCTCCTTCCGTCCGCCAGCTGAAGGCTCTCTTCACCT
ATATATGATAGAATAGGTTGGTTATTGTAGAGCAGGTGCTTGGACAGCTG
TGTGTACGTTAGTGCCCATAAGCAAGCTGACAGTTTGGTATTGTGACAAG
GTCAGAGTCTTGAGTCTTGTCCCCTGATAATCCTTGTAACAAGTCTAGGA
TGAGAAGAAACGCCTCTAAAATGTTGCTGTTCTAGGATGCCTGTGTTTGG
GTGGGAGCAGGGAGAGAATATGTTTGTGATGGGCATAAGAAGATGGATAT
GTTGGAAAGTTGTTGAGGTGTCTCTTGACCCTCTACAAATGGCACACAAG
AATACACTTGACCTTCCCTTCTCCTTGACACCTGTATACTCCTGTTGCCT
TGCTGATAAGGTTGTCTTACCCACCACGTGCGTGGCATCTGAGTTGAAGC
AATTGAGAGGGGTGTTGTTTCAGCCGTTTATAGTGTTGATTTTTTTGTTT
TTCTAACTTTGTTCATAAAGAAGTCGATATTTCAAAATGGGCGTTGATAG
AGATAACTACGAACTGACTTCCACATACTGAACATACCCACAAAACAGCC
ATAGTGCACTCCGCAGCTGTGGACCTAGTGCCACTGAAACTGTGCAACCA
GAAATTCATGGATGCAGTTAAGACTCAGCGGCACCATCCTCTTGGTTTCT
TCAACCCATCTGGCCCTCCTCCCCCCCCCTGTTCGACTTGCACTCTGCCA
TTGATGGGGCGCGACCCTGACAGTTGGTGCGGGGTGGCTCTGTAGCATCA
GTGGACACAGAAGACTTCAACCAGGACAGTTCAGGCAGAACAATCTCCAC
CCAACAGGATACACGAGTTAAGGACGATGAAGCTGAATTGGTCGCTGGGG
TTATGGTGGATGGCTATTGGTACCCGTCAGCAGATGTGGCATCAGCTGCA
GTGAAGGGTCGTGTCGGGGTTACTGCAACCAACTCTGCTGTAACTGCCAA
CTCTGCTGTAACTGCCGCAGCAGCGAGGGATGGGGAAGTAGGGCTACATG
CACACGAGAGGAAGGAGTGGAGGCCGTGGTGGAGGTGGAACTTGGTGAGT
TTGAACATTGAAGCCTGCCGGACTGGTGCCATTGAAAGGACATTACGTGG
TGTCGTCACAGAAGTTGGAAAAAACATTTTTTGCTTTGTTGTGGGAGATT
AAGGTTAGGGTATTCGAGCGAATGTCATCACTTTTCACCAATTGGCAGGA
TTGACTCCTCCACAATACATATACATACATATATATAGATCTCTTCCAGC
CATGTGTACGCCCGTTTGTGATTCCTTAATTGCAATCTCATGCAATTTTT
CTTGTTGTTGCTGACTCTGTGATGCAACATCCCGTCCCCCAACCCT
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Coding sequence (CDS) from alignment at C-tenellus_contig11643:155..2850-

>mRNA_C-tenellus_contig11643.1.1 ID=mRNA_C-tenellus_contig11643.1.1|Name=mRNA_C-tenellus_contig11643.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1167bp|location=Sequence derived from alignment at C-tenellus_contig11643:155..2850- (Choristocarpus tenellus KU2346)
ATGGGAAGCACCCTGGGGGGTGCTTCCCAGAGGACTGTCCATCGTAGACA
CCTCTGTGTTTGCGTCTCAGGACTTTTACTGTGCTTGGTTCTTCAACTCA
CTGTGGCATATGCCCCTAGCCTCCAATGTAATCAGTTCGAAGTCTCTGCG
CCTGTGAATCATGCTTATACTCCGAATGGATTTGCGTGGGTTACGTCTTC
GATCTCTCCCGCACCTCAACGAGGACGCATGACAAGACTGTGCCCACCAA
CTCTCAGGCTGTCCACGTTCTCCAGAGACAGCTTCACAGGCCAGATACCT
GCCTATCAAGGATGGGCCTTGCGCAGTGCATTGCGTGTCAATGGACCCTC
CCACTTACTGTTGCACGGAGGGTCGAACCAGGCCTCTAGCGACAAGGTTT
CTAGACAAGATAGAGTGCTCGAAGCTGAGGTTGTTAGTGCTGTGACCAAA
GCTGCGGTCGAGGTTGCGGTTGATCAGGCCGCCGCTACTGCTGCAACTGA
AGTGACTAGCGACGGGACAACTGACCCTTCCCGACAAGTCAACAAACGCA
GAGCCCTTTCCAGAGTTTTCCATGCCTTGGCCAGGCGATGGAGCCTTGGG
GGCAGTGGCCTTGACCATGGTGAGCTTGTCAATCGCGAATTAAAAGAGAC
AGGAAACGAGATCGGTAGGGATGGGGGTTCCTGGGACAGGCGGGTGGTTC
ATGCTAGAAATACCACTTTCGCCACTGCTTCAACGCAGTTGGTGCGGGGT
GGCTCTGTAGCATCAGTGGACACAGAAGACTTCAACCAGGACAGTTCAGG
CAGAACAATCTCCACCCAACAGGATACACGAGTTAAGGACGATGAAGCTG
AATTGGTCGCTGGGGTTATGGTGGATGGCTATTGGTACCCGTCAGCAGAT
GTGGCATCAGCTGCAGTGAAGGGTCGTGTCGGGGTTACTGCAACCAACTC
TGCTGTAACTGCCAACTCTGCTGTAACTGCCGCAGCAGCGAGGGATGGGG
AAGTAGGGCTACATGCACACGAGAGGAAGGAGTGGAGGCCGTGGTGGAGG
TGGAACTTGGTGAGTTTGAACATTGAAGCCTGCCGGACTGGTGCCATTGA
AAGGACATTACGTGGTGTCGTCACAGAAGTTGGAAAAAACATTTTTTGCT
TTGTTGTGGGAGATTAA
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