mRNA_C-tenellus_contig11633.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11633.1.1
Unique NamemRNA_C-tenellus_contig11633.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig11633.1.1 vs. uniprot
Match: A0A6H5KF56_9PHAE (TRAF-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF56_9PHAE)

HSP 1 Score: 275 bits (703), Expect = 5.240e-79
Identity = 176/429 (41.03%), Postives = 220/429 (51.28%), Query Frame = 3 
Query:    6 GEILGWIGNEEFLNRTWSVCSAWRKW*HRNFWSHVFKDKTAG*LKGTPHSRNKSYP*I*AFIAMIQLLCYNSKPNHSHGTNTEQHLSC*CSLVIDTDLKSRIARFHTNLKVLEVGNGFQRRPGLRSGLCSPLFLPIVPSNLCELNLSGTWTAVSARELGVIRRGCRLKKLMLCGVRLYSFSYRELMLFEHLEDLDISHTELDVKLPPLLFPEPAGSAPG----PRITSQGLHPI-----------SG---EDPRGITCP-------------------------DTTYDTPMFAPVLRRLTAVSTRLWNKWDMSLFPRLVALEISWAGSVLLEELHRRAENGPSLTELSICDVCLRNLVRATNFHKLAYAVGSLSVFRLRRVDVVKHVSQFAYLRAVLARLESLQVLELTGVSLDDDMLAVIKECLPKA 1163
            GEI  W+G EE L RT SVC AWR W +                                    + +L   +   H HG++        CS+                                 +GL  PLFLP+VP  L EL++SG WT++   ELG IRRGCRLKKL++ G+RL SFSYREL+LFEHLE+LDIS +++D+ LP L F EPA   P     P+     L P            SG   E   GI+ P                         D  +D+P FA  L+RL AV TRLWN+WD+S F  L +LE S+AG  +L++LHR+AE G  L EL +CD+ LRNLVR T   +LA AVG  S FRLRRVDVVK V  FAYLRA+  RL++LQVLELT V+LDD MLAV+ E    A
Sbjct:   16 GEIAPWLGAEETLRRTCSVCRAWRHWCNN----------------------------------YLTVLHIGNDHQHLHGSS--------CSV-------------------------------RTAGLSIPLFLPLVPFALRELSMSGGWTSLGGVELGTIRRGCRLKKLVVTGMRLCSFSYRELLLFEHLEELDISDSQMDIPLPRLRFSEPASGKPDLDGIPQAEPVALSPPRRPSIIFPRARSGRVVEQASGISTPFAPSTASRVGGDRRRSRVSSGGEFGDRAFDSPRFAATLKRLVAVKTRLWNRWDLSTFAALTSLEASFAGRAMLKQLHRKAEMGSRLAELCVCDLALRNLVRPTELTELAEAVGGASTFRLRRVDVVKEVPNFAYLRAIFGRLQNLQVLELTDVALDDSMLAVLGEAFSSA 371
[Close]
BLAST of mRNA_C-tenellus_contig11633.1.1 vs. uniprot
Match: D8LM48_ECTSI (TRAF-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM48_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 5.100e-54
Identity = 159/488 (32.58%), Postives = 202/488 (41.39%), Query Frame = 3 
Query:    6 GEILGWIGNEEFLNRTWSVCSAWRKW*HRNFWSHVFKDKTAG*LKGTPHSRNKSYP*I*AFIAMIQLLCYNSKPNHSHGTNTEQHLSC*CSLVIDTDLKSRIARFHTNLKVLEVGNGFQRRPGLR-----SGLCSPLFLPIVPSNLCELNLSGTWTAVSARELGVIRRGCRLKKLMLCGVRLYSFSYRELMLFEHLEDLDISHTELDVKLPPLLFPEPAGSAPGPRITSQGLHPISGEDPRGITCPDTTYDTPMFAPVLRRLTAVSTRLWNKWDMSLFPRLVALEISWAGSVLLEELHRRAENGPSLTELSICDVCLRNLVRATNFHKLAYAVGSLSVFRLRRVDVVKHVSQFAYLRAVLARLESLQVLELTGVSLDDDMLAVIKECLPKALWHTANAPGYIHTPCPPPCQHSSGCAGSCNSSSISSGNELHSEKRGEGDFIAPPCADDRDGSKGTALDALEPRGCGGLKALILGECGLVTEKGFKDF 1454
            GEI  W+G EE L RT SVC AWR W                                          C N                                     L VL +GN  QR  G       +GL  PLFLP+VP  L EL++SG WT++   ELG IRRGCRLKKL++ G+R                                                                         FA  L+RL AV TRLWN+WD+S F  L +LE+S+AG  +L++L R+AE G  L EL +CD+ LRNLVR T   +LA AVG  S FRLRRVDVVK V  FAYLRA+  RL++LQVLELT V+LDD MLAV+ E    A    A   G                      ++ ++  E ++      + +A   A  +DG +G    A        L+ L+LG CG V+E  F+ F
Sbjct:   16 GEIAPWLGAEETLRRTCSVCRAWRHW------------------------------------------CNNY------------------------------------LTVLHIGNDHQRLHGSSCSARTAGLSIPLFLPLVPFALRELSMSGGWTSLGGVELGTIRRGCRLKKLVVTGMR-------------------------------------------------------------------------FAATLKRLVAVKTRLWNRWDLSTFAALTSLEVSFAGRAMLKQLPRKAEMGSRLAELCVCDLALRNLVRPTELTELAEAVGGASTFRLRRVDVVKEVPNFAYLRAIFGRLQNLQVLELTDVALDDSMLAVLGEAFSSARLPPAAVKG----------------------AAAAARAEPYNTFFPSANAVA---ASQQDGGEGDVAVA-------SLRTLVLGRCGGVSEPAFEAF 320
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11633.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF56_9PHAE5.240e-7941.03TRAF-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LM48_ECTSI5.100e-5432.58TRAF-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11633contigC-tenellus_contig11633:1024..5135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1460
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionTRAF-like
Ec32 orthologEc-06_002450.1
Cds size945
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11633.1.1prot_C-tenellus_contig11633.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11633 1539..5135 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.6731825-UTR-C-tenellus_contig11633:1023..15381680789187.6731825-UTR-C-tenellus_contig11633:1023..1538Choristocarpus tenellus KU2346UTRC-tenellus_contig11633 1024..1538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.6855564-CDS-C-tenellus_contig11633:1538..15551680789187.6855564-CDS-C-tenellus_contig11633:1538..1555Choristocarpus tenellus KU2346CDSC-tenellus_contig11633 1539..1555 +
1680789187.70511-CDS-C-tenellus_contig11633:1765..18151680789187.70511-CDS-C-tenellus_contig11633:1765..1815Choristocarpus tenellus KU2346CDSC-tenellus_contig11633 1766..1815 +
1680789187.7177196-CDS-C-tenellus_contig11633:2336..26441680789187.7177196-CDS-C-tenellus_contig11633:2336..2644Choristocarpus tenellus KU2346CDSC-tenellus_contig11633 2337..2644 +
1680789187.7303398-CDS-C-tenellus_contig11633:3136..32291680789187.7303398-CDS-C-tenellus_contig11633:3136..3229Choristocarpus tenellus KU2346CDSC-tenellus_contig11633 3137..3229 +
1680789187.7425458-CDS-C-tenellus_contig11633:4151..42521680789187.7425458-CDS-C-tenellus_contig11633:4151..4252Choristocarpus tenellus KU2346CDSC-tenellus_contig11633 4152..4252 +
1680789187.754214-CDS-C-tenellus_contig11633:4759..51351680789187.754214-CDS-C-tenellus_contig11633:4759..5135Choristocarpus tenellus KU2346CDSC-tenellus_contig11633 4760..5135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11633.1.1

>prot_C-tenellus_contig11633.1.1 ID=prot_C-tenellus_contig11633.1.1|Name=mRNA_C-tenellus_contig11633.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=315bp
MLCGVRLYSFSYRELMLFEHLEDLDISHTELDVKLPPLLFPEPAGSAPGP
RITSQGLHPISGEDPRGITCPDTTYDTPMFAPVLRRLTAVSTRLWNKWDM
SLFPRLVALEISWAGSVLLEELHRRAENGPSLTELSICDVCLRNLVRATN
FHKLAYAVGSLSVFRLRRVDVVKHVSQFAYLRAVLARLESLQVLELTGVS
LDDDMLAVIKECLPKALWHTANAPGYIHTPCPPPCQHSSGCAGSCNSSSI
SSGNELHSEKRGEGDFIAPPCADDRDGSKGTALDALEPRGCGGLKALILG
ECGLVTEKGFKDFFS
back to top

mRNA from alignment at C-tenellus_contig11633:1024..5135+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11633.1.1 ID=mRNA_C-tenellus_contig11633.1.1|Name=mRNA_C-tenellus_contig11633.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4112bp|location=Sequence derived from alignment at C-tenellus_contig11633:1024..5135+ (Choristocarpus tenellus KU2346)
TGTTGGGGGAGATACTTGGCTGGATTGGGAATGAAGAGTTCTTGAATCGG
ACCTGGAGCGTGTGCAGTGCTTGGAGAAAATGGTAACACCGCAACTTCTG
GTCCCATGTTTTCAAAGACAAGACTGCAGGCTAATTGAAAGGCACACCAC
ACTCACGGAACAAGTCTTACCCCTAAATTTAGGCATTTATTGCAATGATA
CAGCTTCTGTGCTACAATTCAAAGCCAAACCACTCTCATGGAACAAACAC
AGAACAACACTTGTCCTGTTGATGCTCCCTGGTTATTGATACTGACCTGA
AATCGCGAATTGCAAGGTTCCATACGAACCTCAAGGTGTTGGAGGTTGGC
AATGGGTTCCAACGTCGCCCTGGTTTAAGGTCAGGGCTGTGCTCTCCTCT
GTTTTTACCCATTGTGCCGTCGAACCTCTGTGAGCTGAACCTGTCTGGAA
CCTGGACTGCTGTATCCGCACGGGAACTTGGTGTAATTCGACGAGGTTGT
CGATTGAAGAAGCTTATGTTATGTGGAGTAAGGTAAGTGCTTCGGGGGCT
ACATGGAGAGTGCAATGATAGTTTTTTTCGATGTTGTATTTTAGTGTGTT
TGTGACGTCCGAAATGTCTTTTAGCTAGAAAGTTAAGGCTGTATCTTGTT
AGCTCTGCAGTATGCATTTTTCCAGTCAATTTTTTTTTGTAATTTGACCT
CTTGATACCTACCTCTCACCCATTTTCCGTGTCTCTCCCCAGGCTGTACT
CCTTTTCGTACCGAGAGTTAATGCTCTTTGAGCACCTCGAAGGTAAGAAC
TCCCCCATACAATCGTAAACTGCATATATGCTTTTTTGTGCACTAGTGCA
CATGTTGCCGTATATGGGTGTGGTTTTGCTTGCACAGCGGTTAAACACTT
CTTTCGACCGTACACGGTAGCAGTACAATTTTCTTTGTGTCAGTGCTGTG
GTGAGACTTGGTGCACTTCCGATGTTTTGTTCAGGCACTCTTGTACCAGC
TATTACCACAGAAGCCAGTACACTTCAGTAAATGCATGTGCTATGTGCGC
AGGCTCCAATTGGCCGAGTTGTTACCTCTCTATTTCTTAATGCTCTAGAG
CAAGTAACAGAGATCTCAACAGCACAATCTATTGCTTGGACTCTTTTCTC
ATTCGTCGGTTACAACAATATCTTGAGCCCCATGGGAACTAGTTCCAACT
CCTCGTGGTGATGCCCAAATGATATTACACAGGCTAAGAAAATACCCCTG
CTGACCTTTAACCAGACCTTTACTTACCTTCCCCCCTTCTCCGAAACATA
TCTTTTCGTCCAGACCTCGACATCTCTCACACTGAATTGGATGTTAAGCT
CCCCCCATTGCTGTTCCCGGAGCCTGCCGGATCAGCCCCTGGCCCCCGGA
TCACCTCCCAAGGCCTCCACCCAATCTCCGGTGAAGATCCACGAGGAATC
ACATGCCCTGATACCACCTACGATACTCCAATGTTTGCACCAGTACTTCG
GCGCCTAACGGCAGTTTCAACTCGGTTGTGGAACAAGTGGGATATGTCGT
TGTTCCCAAGACTTGTGGCGCTTGAGATCTCATGGGCAGGGAGCGTTCTG
TTGGAAGAGCTGCATAGAAGGGTGCGTGTAGTTCCGTGAGAAGGGGTGGT
TGATAGTTGAATGGTTTTACAATTGATCTGAGTAGGGGAGACAAGTGTGA
ATGGCGTATCGATTGCACATACAGTATTTGGATGCATGGACTCAGCAGTT
GGCTATTTCACTACTAATCATACAGGAAATGTTTTGAATTGATATTTCCT
GGGCCTTGAGTCCTCTACTTTTTAGGTCGAGATACCCGAGAGATGAGCGG
CCTTTCCGTGTTTGATTCTATGTGTCAGCCCAGCACCTCCTGTGCCAGAC
ACCTTGACTGTCACTCTTCTAATGTGCTGTACCACACCATTTACTGCATG
GCATAAGCATACTGTCTTGGCAAAGTATTTCAGACCATCCGGTATGAATG
CTGAGTGCTTGTCCGAGCTTCTTTCCTGTCTCTGCCCTTGCCTGGTTAAA
CCCTTATAAATGTATGCCCTCTGACCCCAACCCACCCCTTTTCCCAATTT
ATGTACCATTTAGGCTGAAAATGGGCCCAGCCTGACAGAGCTTTCGATAT
GCGACGTGTGCCTCCGTAACCTGGTCCGCGCCACCAACTTTCACAAGCTT
GCTTATGTCAGTACTCTCTGGTTCAAGAAGCTGGGTCTGATCTTAGAGGG
ATGAGGGGAGCATTCCTGGTGTTTCTTTAGGGGGGCGCAGCCCAGGCACA
GTTGGCAGGCATCAAGTAGTGCGTTTTGAGAGAAACCTTCTAGAGGATAG
TGGTGTATGTTTTGTGGAAATTTGAGACTGGAGGTGGGCCGCAAACATTT
TGTCTAGCAAGATGTAGGGTTGCAAGAGGTGGAATGTCATGGGGCAGCGG
GGGGGGGGTAGGTTCTTATTGAACAGCACGCATTGCCAAAGTTTAATAAT
ATATATTGCCTGAGCTTTTTTCAACTGAAGCAAGGGAGGCAGGCAGGGTT
GATGATGCCTGTCTAATGGGGTGGAAGTTGTACTTGAGGGGGATAGTGTC
TTCCGCACGTTATGATGATTGTCCTTGGTGTAACACGTTATGATGATTGT
CCTTGGTGTAACACGTCTTTTCTTTGTTGGTACAGTTAGATGAACCCCCC
CCTTCCAACCTTTCCATGCCACCCCTCTGAAGCCAATTCGCCGTTACTAC
TTCACTGGTATGTACTGGAGTATTCCACTATGTATTTCTAATACTACACT
AATAGTATTGTACTATTATGTTTCTAATAATATTGTGCTAACATATTTCT
GATGATACTGTACTACTGTGGTGGCTGTTGAGCAGCATGATATGAACGTT
TTAATCTATCTCGATGTAAGTATCTCGATGTAAGTTAAAAAAAATAAATG
TAGGTAATTGTATGTCCACATTGTGTCTGTACCTAAGTTGGATCCAGAGT
CCTCTCTCCTTTCCCGATACGCAGAATGTTCCATTTTTGTGTGTATATGT
CTATATGTGTACATGTGTGTATGTCTATATGTCTTTATATTAATGTATAT
GTATATATATATGTATGCATGAATACAGGCTGTGGGTTCACTCTCAGTCT
TTCGTCTTCGACGTGTGGATGTGGTCAAGCATGTGTCACAGTTCGCTTAT
CTGAGGGCAGTCTTGGCACGCCTGGAAAGGTGAGATCCCCTGTATGATAT
GGCAGGGAGAGGGGGGGGGGGGGGGGGAGGTGGGAGCCGGGGGGTTGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGTGGCGGGGCGTGGT
TTTGCAAAAGACAACGATCAAAGAACTAATCCTGCCATGCATATGGAACA
GCCCCATTGAGGTTCCAAGAAGATGGAGTAAATTAGAAATGATGAAAGTT
CATTGTGAATTCCTCCTATTGGCTCATTGTGGTATATCGGACGATTCTGT
TGGCCAATAGGATGCTGTACGCACAATAACCCTTACCCAGTCTTCACACT
ACTCACCCTATATCACGGTTATTCCTTACCCCCCCTTGCAGCTGTAAACC
ACCCTACTATTTTTGTCTCCCTCCTTTCTCTCAGCCCCCCATTCCCCATC
CCAGCCTACCACCTCCTACCACCTCAGACTCATCCTTAACTGCGTTGCTT
AACCCCACCCCCTGCCCCTGCCCCTGTTTTTCTTAGCCTCCAGGTATTGG
AGCTCACGGGGGTGTCCCTAGATGATGACATGCTTGCTGTCATAAAGGAG
TGTCTGCCCAAGGCCCTTTGGCATACAGCCAATGCACCTGGTTATATCCA
CACTCCCTGCCCACCCCCCTGCCAGCACTCCTCCGGTTGCGCTGGCAGTT
GCAACAGCAGTAGTATTAGTAGCGGCAATGAACTGCACTCCGAGAAGAGA
GGCGAGGGCGATTTCATTGCTCCGCCCTGTGCTGACGACCGTGATGGGAG
CAAAGGCACAGCTCTGGATGCCCTGGAGCCGAGAGGTTGTGGTGGACTGA
AGGCCCTAATTCTGGGGGAATGTGGCCTAGTGACAGAAAAAGGATTCAAG
GATTTCTTCTCA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11633:1024..5135+

>mRNA_C-tenellus_contig11633.1.1 ID=mRNA_C-tenellus_contig11633.1.1|Name=mRNA_C-tenellus_contig11633.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=945bp|location=Sequence derived from alignment at C-tenellus_contig11633:1024..5135+ (Choristocarpus tenellus KU2346)
ATGTTATGTGGAGTAAGGCTGTACTCCTTTTCGTACCGAGAGTTAATGCT
CTTTGAGCACCTCGAAGACCTCGACATCTCTCACACTGAATTGGATGTTA
AGCTCCCCCCATTGCTGTTCCCGGAGCCTGCCGGATCAGCCCCTGGCCCC
CGGATCACCTCCCAAGGCCTCCACCCAATCTCCGGTGAAGATCCACGAGG
AATCACATGCCCTGATACCACCTACGATACTCCAATGTTTGCACCAGTAC
TTCGGCGCCTAACGGCAGTTTCAACTCGGTTGTGGAACAAGTGGGATATG
TCGTTGTTCCCAAGACTTGTGGCGCTTGAGATCTCATGGGCAGGGAGCGT
TCTGTTGGAAGAGCTGCATAGAAGGGCTGAAAATGGGCCCAGCCTGACAG
AGCTTTCGATATGCGACGTGTGCCTCCGTAACCTGGTCCGCGCCACCAAC
TTTCACAAGCTTGCTTATGCTGTGGGTTCACTCTCAGTCTTTCGTCTTCG
ACGTGTGGATGTGGTCAAGCATGTGTCACAGTTCGCTTATCTGAGGGCAG
TCTTGGCACGCCTGGAAAGCCTCCAGGTATTGGAGCTCACGGGGGTGTCC
CTAGATGATGACATGCTTGCTGTCATAAAGGAGTGTCTGCCCAAGGCCCT
TTGGCATACAGCCAATGCACCTGGTTATATCCACACTCCCTGCCCACCCC
CCTGCCAGCACTCCTCCGGTTGCGCTGGCAGTTGCAACAGCAGTAGTATT
AGTAGCGGCAATGAACTGCACTCCGAGAAGAGAGGCGAGGGCGATTTCAT
TGCTCCGCCCTGTGCTGACGACCGTGATGGGAGCAAAGGCACAGCTCTGG
ATGCCCTGGAGCCGAGAGGTTGTGGTGGACTGAAGGCCCTAATTCTGGGG
GAATGTGGCCTAGTGACAGAAAAAGGATTCAAGGATTTCTTCTCA
back to top