mRNA_C-tenellus_contig11629.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11629.1.1
Unique NamemRNA_C-tenellus_contig11629.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig11629.1.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.330e-29
Identity = 61/104 (58.65%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 ELYILSDKNTPALNLRAHGGNLSIYKSKIYGWNYDKKEPDSGAKRANGRAYISCISEIITDLDEDCGNGAAKNTMGECRMDIIDSEIGYLGYQASESYGLTYKV 312
            EL +LS   T  +NLRAHGG+L    +K++ W+     PD      +GR+YIS ISEIITD DE C  G AKNTMGE RMDI  SEIGYLGY  SESYGLT+KV
Sbjct:   24 ELRLLSTSET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDED--ETDGRSYISAISEIITDEDETC-EGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKV 123
[Close]
BLAST of mRNA_C-tenellus_contig11629.1.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 6.890e-29
Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:    1 ELYILSDKNTPALNLRAHGGNLSIYKSKIYGWNYDKKEPDSGAKRANGRAYISCISEIITDLDEDCGNGAAKNTMGECRMDIIDSEIGYLGYQASESYGLTYKV 312
            EL +LS  +T  +NLRAHGG+L    +K++ W+     PD      +GR+YIS ISEIITD DE C  G AKNTMGE RMDI +SEIGYLG+Q SESYGLT+KV
Sbjct:  133 ELRLLSTTDT-YINLRAHGGSLDFVGTKVFSWDTSTNSPDED--ETDGRSYISAISEIITDEDETC-EGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKV 232
[Close]
BLAST of mRNA_C-tenellus_contig11629.1.1 vs. uniprot
Match: D8LHA2_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA2_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.530e-28
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:    1 ELYILSDKNTPALNLRAHGGNLSIYKSKIYGWNYDKKEPDSGAKRANGRAYISCISEIITDLDEDCGNGAAKNTMGECRMDIIDSEIGYLGYQASESYGLTYKV 312
            EL +LS  +T  +NLRA+GG+L    +K++ W+     PD      +GR+YIS +SEI+TD DE C  G AKNTMGE RMDI +SEIGYLG+Q SESYGLT+KV
Sbjct:  134 ELRLLSTSDT-YINLRAYGGSLDFVGTKVFSWDTSTNSPD--VVETDGRSYISAVSEIVTDEDESC-EGHAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKV 233
[Close]
BLAST of mRNA_C-tenellus_contig11629.1.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 3.330e-28
Identity = 61/104 (58.65%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 ELYILSDKNTPALNLRAHGGNLSIYKSKIYGWNYDKKEPDSGAKRANGRAYISCISEIITDLDEDCGNGAAKNTMGECRMDIIDSEIGYLGYQASESYGLTYKV 312
            EL +LS   T  +NLRAHGG+L    +K++ W+     PD      +GR+YIS ISEIITD DE C  G AKNTMGE RMDI  SEIGYLGY  SESYGLT+KV
Sbjct:  130 ELRLLSTNET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDED--ETDGRSYISAISEIITDEDETC-EGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKV 229
[Close]
BLAST of mRNA_C-tenellus_contig11629.1.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 9.150e-28
Identity = 61/104 (58.65%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 ELYILSDKNTPALNLRAHGGNLSIYKSKIYGWNYDKKEPDSGAKRANGRAYISCISEIITDLDEDCGNGAAKNTMGECRMDIIDSEIGYLGYQASESYGLTYKV 312
            EL +LS   T  +NLRAHGG+L    +K++ W+     PD      +GR+YIS ISEIITD DE C  G AKNTMGE RMDI  SEIGYLGY  SESYGLT+KV
Sbjct:  130 ELRLLSTNET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDED--ETDGRSYISAISEIITDEDETC-EGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKV 229
[Close]
BLAST of mRNA_C-tenellus_contig11629.1.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 9.390e-28
Identity = 59/104 (56.73%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:    1 ELYILSDKNTPALNLRAHGGNLSIYKSKIYGWNYDKKEPDSGAKRANGRAYISCISEIITDLDEDCGNGAAKNTMGECRMDIIDSEIGYLGYQASESYGLTYKV 312
            EL +LS   T  +NLRAHGG+L    +K++ W+     PD      +GR+YIS +SEI+TD DE C  G AKNTMGE RMDI +SEIGYLG+Q SESYGLT+KV
Sbjct:  134 ELRLLSTSET-YINLRAHGGSLDFVGTKVFSWDTSTNSPDED--ETDGRSYISAVSEIVTDEDETC-EGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKV 233
[Close]
BLAST of mRNA_C-tenellus_contig11629.1.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.140e-26
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:    1 ELYILSDKNTPALNLRAHGGNLSIYKSKIYGWNYDKKEPDSGAKRANGRAYISCISEIITDLDEDCGNGAAKNTMGECRMDIIDSEIGYLGYQASESYGLTYKV 312
            EL +LS  +T  +NLRAHGG+L    +K++ W+     PD   +  +GR+Y+S +SE+ITD  + C NG AKN MGE RMDI DSE+GYLGY  SESYGLT+KV
Sbjct:  127 ELRLLSTSDT-FINLRAHGGSLDFLSTKVFAWDTSINGPDRDEE--DGRSYVSAVSEVITDDSQTC-NGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKV 226
[Close]
BLAST of mRNA_C-tenellus_contig11629.1.1 vs. uniprot
Match: A0A6H5KSU6_9PHAE (MEP3 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSU6_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.370e-25
Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:    1 ELYILSDKNTPALNLRAHGGNLSIYKSKIYGWNYDKKEPDSGAKRANGRAYISCISEIITDLDEDCGNGAAKNTMGECRMDIIDSEIGYLGYQASESYGLTYKV 312
            EL +LS++ T  +NLRAHGG+ S   +K+  WN  K+  D+  +  +GR+YIS +SE+I D ++ C NG AK+ MGE RMD+IDSEI +LGY  SESYGLT+KV
Sbjct:  264 ELRLLSNETT-FINLRAHGGSFSFLGTKVVSWNEGKRTVDTNHE--DGRSYISAVSEVIYDPNQTC-NGTAKSEMGEARMDVIDSEIAFLGYYESESYGLTWKV 363
[Close]
BLAST of mRNA_C-tenellus_contig11629.1.1 vs. uniprot
Match: D7FMJ0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ0_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.770e-25
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:    1 ELYILSDKNTPALNLRAHGGNLSIYKSKIYGWNYDKKEPDSGAKRANGRAYISCISEIITDLDEDCGNGAAKNTMGECRMDIIDSEIGYLGYQASESYGLTYKV 312
            EL +LSD+ T  +NLRAHGG+ S   +K+  WN  K   D+  +  +GR+YIS +SE+I D ++ C NG AK+ MGE RMD+IDSEI +LGY  SESYGLT+KV
Sbjct:  438 ELRLLSDETT-FINLRAHGGSFSFLGTKVVSWNEGKGTVDTNHE--DGRSYISAVSEVIYDPNQTC-NGTAKSEMGEARMDVIDSEIAFLGYYESESYGLTWKV 537
[Close]
BLAST of mRNA_C-tenellus_contig11629.1.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 7.630e-25
Identity = 56/104 (53.85%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 ELYILSDKNTPALNLRAHGGNLSIYKSKIYGWNYDKKEPDSGAKRANGRAYISCISEIITDLDEDCGNGAAKNTMGECRMDIIDSEIGYLGYQASESYGLTYKV 312
            EL +LS      +NLRAHGG+L    +K++ W+  K +  +   +A  R+YIS +SEIITD  E C +G AK TMGE RMDI DSE+ YLGYQ SESYGLT+KV
Sbjct:  130 ELRLLSTSKD-FINLRAHGGSLDFVSTKVFAWDTSKNKVRTDGSKA--RSYISAVSEIITDSKEKC-DGKAKKTMGEARMDIEDSEMAYLGYQGSESYGLTWKV 229
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11629.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KES9_9PHAE3.330e-2958.65MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
A0A6H5JU98_9PHAE6.890e-2958.65MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LHA2_ECTSI2.530e-2855.77Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7FXE5_ECTSI3.330e-2858.65Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI9.150e-2858.65Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D7FXE4_ECTSI9.390e-2856.73Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAJ7_9PHAE1.140e-2653.85Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
A0A6H5KSU6_9PHAE1.370e-2552.88MEP3 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FMJ0_ECTSI1.770e-2553.85Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAK2_9PHAE7.630e-2553.85Mannuronan C-5-epimerase n=2 Tax=Laminaria digitat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11629contigC-tenellus_contig11629:2952..3782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LC73
PFAMsWSC
Model size312
Max annot lvl2759|Eukaryota
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.58e-20
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Descriptionprotein xylosyltransferase activity
Cds size312
COG categoryU
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.512878-CDS-C-tenellus_contig11629:2951..31791680789187.512878-CDS-C-tenellus_contig11629:2951..3179Choristocarpus tenellus KU2346CDSC-tenellus_contig11629 2952..3179 -
1680789187.5247564-CDS-C-tenellus_contig11629:3698..37821680789187.5247564-CDS-C-tenellus_contig11629:3698..3782Choristocarpus tenellus KU2346CDSC-tenellus_contig11629 3699..3782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11629.1.1prot_C-tenellus_contig11629.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11629 2952..3782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11629.1.1

>prot_C-tenellus_contig11629.1.1 ID=prot_C-tenellus_contig11629.1.1|Name=mRNA_C-tenellus_contig11629.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=104bp
ELYILSDKNTPALNLRAHGGNLSIYKSKIYGWNYDKKEPDSGAKRANGRA
YISCISEIITDLDEDCGNGAAKNTMGECRMDIIDSEIGYLGYQASESYGL
TYKV
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mRNA from alignment at C-tenellus_contig11629:2952..3782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11629.1.1 ID=mRNA_C-tenellus_contig11629.1.1|Name=mRNA_C-tenellus_contig11629.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=831bp|location=Sequence derived from alignment at C-tenellus_contig11629:2952..3782- (Choristocarpus tenellus KU2346)
GAGCTTTACATTCTTAGTGATAAAAACACTCCCGCCCTGAATCTCCGTGC
ACATGGAGGCAACCTTAGCATTTATAAGTCCAAGGTGAGGAATAATAATA
CCTTTCTTATGAGTACAGAATATGCCAGGACTGCTACAGAGCAATTGCAC
CCTACTATTGTCTGTTTCCTGATGTTGCTTGTGAAGAGAGTAGACACCAG
AAAGTCATGCCTTACAACCCCTCACCAGCAATTCATGTTTCAAGTGTCGG
TTATCGATCTTATGGAATGGGGAACACGAAATCTAATCCATGCTCTGCCT
TTAAAGTCAGAGCGCAGTATCCATCGGACATGCACGTAAATCAGTTGGAT
ATGAATCTAGGAGTGCGAATTCTATGAACGAGAACGAAGTGAATGGTTAA
TGCCTCACACACAGTCCATGTCGTTCCCGATACCTCACACTCCAATGTCG
GGGAGTACAAATGCGTGAAAGGTGGGCTACGTGGGCTACCTGTATCTCGT
AACTTCTTTGCCCAGATTGACTTTTTGCGATTCCCTCGGCTTCTTGATAT
TTTTTGTTGACCCCATTTGTTTAACATCATGCGTATTTTCCTTTCAATTT
CAGATTTATGGGTGGAACTACGACAAGAAGGAGCCTGACTCTGGTGCTAA
GAGAGCCAATGGGCGTGCCTACATCAGCTGCATATCTGAAATAATAACAG
ATCTGGATGAGGATTGTGGGAATGGGGCTGCCAAGAACACTATGGGGGAG
TGTCGAATGGACATCATAGACTCTGAAATTGGTTACCTTGGTTATCAGGC
CAGCGAATCCTATGGTTTAACATACAAGGTA
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Coding sequence (CDS) from alignment at C-tenellus_contig11629:2952..3782-

>mRNA_C-tenellus_contig11629.1.1 ID=mRNA_C-tenellus_contig11629.1.1|Name=mRNA_C-tenellus_contig11629.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=312bp|location=Sequence derived from alignment at C-tenellus_contig11629:2952..3782- (Choristocarpus tenellus KU2346)
GAGCTTTACATTCTTAGTGATAAAAACACTCCCGCCCTGAATCTCCGTGC
ACATGGAGGCAACCTTAGCATTTATAAGTCCAAGATTTATGGGTGGAACT
ACGACAAGAAGGAGCCTGACTCTGGTGCTAAGAGAGCCAATGGGCGTGCC
TACATCAGCTGCATATCTGAAATAATAACAGATCTGGATGAGGATTGTGG
GAATGGGGCTGCCAAGAACACTATGGGGGAGTGTCGAATGGACATCATAG
ACTCTGAAATTGGTTACCTTGGTTATCAGGCCAGCGAATCCTATGGTTTA
ACATACAAGGTA
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