mRNA_C-tenellus_contig11626.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11626.1.1
Unique NamemRNA_C-tenellus_contig11626.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11626.1.1 vs. uniprot
Match: A0A6H5L4H8_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4H8_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.430e-44
Identity = 109/304 (35.86%), Postives = 158/304 (51.97%), Query Frame = 2
Query:  149 GQFEPIGHYKLEPSAKGFSVTNAHYFAHLSIVAYETKDIATSELCNMLGYT------DVF-WLNSED-----------YSTQGYVAAQASHVVVVFRGTDQGADWWVNLDIFNK--------ETKHGDVHKGFHTALNSIWGNRKDF-KGILEIVKSF-RAQTPDRPIFLSGHSLGGALASVAAAQLELDVPDVSVAGVYTIGSPRVFSREYATAYDKA------LEAKTFRAVNNNDFVTRVPHI-LQHVGTEVYIDPSGNIGPRNWLDFFAGYWQSIWGGSITDGFNDHAKELYKAAFLAAI 955
            G  E    +KL+  A  FS  NA++ A +S + Y++KD   S L  +  +       D F W  + D           + T+ +VAA    +VV FRG+  G DW  N  I  +        ET  GD+H+GF   +N++W       +G+L ++K F   +   R ++++GHSLGGALA++AAA+L   V D++VA +YTIGSPRVF  E A  +D        ++ K FR  NNND V+ +P    +HVGTEVY D  G +   N LD   G W ++   S  DG NDH++  Y   F  A+
Sbjct:   20 GDAEEEVEFKLDNDATAFSEQNAYFLARMSDLCYQSKDEVRSALETLSFWGKGAAAGDNFQWFEANDEVVDRSSFDPIHDTEAFVAANDGAIVVAFRGSSGGRDWLTNFSILPRDIPKDWKLETTDGDLHRGFDDGVNTVWNPGPGHPEGMLAVIKRFYHEEGRSRKLYITGHSLGGALATIAAARLVF-VDDLNVAALYTIGSPRVFDSEVAAIFDSKTNHGTRMKDKYFRCRNNNDIVSCIPPSPYKHVGTEVYFDRFGAMSTHNLLDRLLGRWSALLRFSFIDGVNDHSRSEYIRLFEQAV 322          
BLAST of mRNA_C-tenellus_contig11626.1.1 vs. uniprot
Match: UPI001C49A6C7 (lipase family protein n=1 Tax=Marinospirillum perlucidum TaxID=1982602 RepID=UPI001C49A6C7)

HSP 1 Score: 162 bits (411), Expect = 2.350e-43
Identity = 99/269 (36.80%), Postives = 149/269 (55.39%), Query Frame = 2
Query:  176 KLEPSAKGFSVTNAHYFAHLSIVAYETKDIATSELCNMLGYT---DVFWLNSEDYSTQGYVAAQASHVVVVFRGTD-QGADWWVNLDIFNKETKH----GDVHKGFHTALNSIWGNRKDFKGILEIVKSFRAQTPDRPIFLSGHSLGGALASVAAAQLELDVPDVSVAGVYTIGSPRVFSREYATAYDKALEAKTFRAVNNNDFVTRVPHIL---QHVGTEVYIDPSGNIGPRNWLDFFAGYWQSIWG------GSITDGFNDHAKELY 931
            K    AKGFS  N  Y +H S + Y++K     EL   LG+    D ++ +  +  TQ ++   A  +++ FRGT+ + ADW  +  IF ++       G VH+GF++AL+S+W      + + E V   R  T ++ ++++GHSLGGALAS+AAA  EL  P   V GVYT G PR+  +E++  Y+K L+ ++FR VNNND VTRVP  +    HVG  +Y D  G +   N L ++A +W  + G          DG  DH+ E+Y
Sbjct:    3 KFNHRAKGFSKINLSYLSHCSHLVYKSKQEIAQEL-EKLGFDLSRDRYFFSDPETDTQAFLVGDARKIILAFRGTEGKLADWATDARIFKRQWTQAQPLGAVHRGFYSALSSLW------EALEEEVAHLR--TNNQSLWITGHSLGGALASLAAATFELQHPQQGVNGVYTFGQPRIADQEFSQNYNKLLKERSFRCVNNNDVVTRVPPQIFGYSHVGKLLYFDADGELQRDNSLSWWARFWDRLEGRYDDVFNLTPDGVTDHSIEIY 262          
BLAST of mRNA_C-tenellus_contig11626.1.1 vs. uniprot
Match: D8LDK8_ECTSI (Putative lipase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK8_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 3.360e-41
Identity = 99/275 (36.00%), Postives = 149/275 (54.18%), Query Frame = 2
Query:  200 FSVTNAHYFAHLSIVAY----ETKDIATSELCNM-LGYTDVFWLNSEDYS----------TQGYVAAQASHVVVVFRGTDQGADWWVNLDIFNKETKH--------GDVHKGFHTALNSIWGNRKDFKGILEIVKSFRAQTPDRPIFLSGHSLGGALASVAAAQLELDVPDVSVAGVYTIGSPRVFSREYATAYDKA------LEAKTFRAVNNNDFVTRVP--HILQHVGTEVYIDPSGNIGPRNWLDFFAGYWQSIWGGSITDGFNDHAKELY 931
            FS  NA YFA L  +AY    E K +      N  LG+    W ++++ +          T+ +VAA    V VVFRGT +  DW  NLDI  ++           G VH+GF+  ++S+W  R + + +++ +  +  +  DR ++++GHSLGGALA+VAAA+L   + ++ +AGVYTIGSPR+F    A  +D        L+ K FR  NNND VTR+P     +HVGTE+Y+D  G I   ++ D   G   ++  G + DG +DH+   Y
Sbjct:   10 FSTQNAFYFASLCKIAYKPEQEAKGLVKGNSTNDGLGFDRFHWFDADEAAKRSSFDAIQDTEAFVAANDDMVAVVFRGTKELTDWATNLDISPRDCAEQWEAPDAVGAVHEGFNEGVDSVWEVRGNMRKVIKNL--YNEKGKDRKLYIAGHSLGGALATVAAARLSY-IDNLDIAGVYTIGSPRLFDPSAAAGFDSRMNDGTPLKEKYFRCRNNNDIVTRIPLPPSYEHVGTEIYLDRFGAISTSSFADRILGRLSALCRGELIDGVDDHSTSEY 281          
BLAST of mRNA_C-tenellus_contig11626.1.1 vs. uniprot
Match: A0A1X7AEQ2_9GAMM (Lipase (Class 3) n=1 Tax=Parendozoicomonas haliclonae TaxID=1960125 RepID=A0A1X7AEQ2_9GAMM)

HSP 1 Score: 150 bits (380), Expect = 6.520e-39
Identity = 91/263 (34.60%), Postives = 136/263 (51.71%), Query Frame = 2
Query:  191 AKGFSVTNAHYFAHLSIVAYETKDIATSELCNMLGYTDVFWLNSEDYSTQGYVAAQASHVVVVFRGTDQGADWWVN-----LDIFNKETKHGDVHKGFHTALNSIWGNRKDFKGILEIVKSFRAQTPDRPIFLSGHSLGGALASVAAAQLELDVPDVSVAGVYTIGSPRVFSREYATAYDKALEAKTFRAVNNNDFVTRVPHIL---QHVGTEVYIDPSGNIGPRNWLDFFAGYWQSIWG------GSITDGFNDHAKELYKA 937
            A  F   N  Y +  + +AYE +    + L N+   T       ++  T+  VA     ++V FRGT+     W+N      D + ++   G VH GF+ A NS+W        +L  ++  R +T ++ I+L+GHSLGGALA++AAA LEL  PD+ V GVYT G PR  +  +A  Y+  L+ +TFR VNNND +TR+P  +    H+GT +Y D  G I     L ++A +W  + G          DG  DH  + Y+A
Sbjct:    8 ASNFKKKNLAYLSRFANLAYEDESTVRTALDNLDLDTSNNSFFFKEGDTEAVVAGDRKKIIVAFRGTEATLGEWMNNAQIAKDTWTEDNPLGMVHSGFYEAFNSVWNQ------VLAEIQ--RLRTHNQTIWLTGHSLGGALATIAAATLELQQPDIRVNGVYTFGQPRTANHLFAKNYNNRLKERTFRCVNNNDVITRIPPQIFGYSHIGTLMYFDTDGTIHTDGKLSWWARFWDRLEGRYDDIWNLAPDGVEDHRMDNYQA 262          
BLAST of mRNA_C-tenellus_contig11626.1.1 vs. uniprot
Match: A0A7R6W869_9GAMM (Triacylglycerol lipase n=1 Tax=Methyloprofundus sp. TaxID=2020875 RepID=A0A7R6W869_9GAMM)

HSP 1 Score: 150 bits (379), Expect = 9.860e-39
Identity = 94/271 (34.69%), Postives = 149/271 (54.98%), Query Frame = 2
Query:  176 KLEPSAKGFSVTNAHYFAHLSIVAYETKDIATSELCNMLGYT---DVFWLNSEDYSTQGYVAAQASHVVVVFRGTD-QGADWWVNLDIFN----KETKHGDVHKGFHTALNSIWGNRKDFKGILEIVKSFRAQTPDRPIFLSGHSLGGALASVAAAQLELDVPDVSVAGVYTIGSPRVFSREYATAYDKALEAKTFRAVNNNDFVTRVPHIL---QHVGTEVYIDPSGNIGPRNWLDFFAGYWQSIWG------GSITDGFNDHAKELYKA 937
            K  PSAKGFS  N  Y A  S +AYE+K+     + +  G+    D ++ +     TQ ++      +++ FRGT+ + ADW  ++ +F       T  G VHKGF+ AL ++      F  I   + + R  T ++ I+++GHSLGGALA++AAA L+    ++   G+YT G PR+  R +A A++K L+ K FR VNNND V+RVP  +    HVGT  Y D +G +   + L ++A +W  + G        I D  +DH+ ++Y++
Sbjct:    5 KFNPSAKGFSKLNLAYLAFCSNLAYESKEKIRLNMESQ-GFNLERDNYFFSDSVTGTQCFIVGDNKKIIITFRGTEGKVADWVTDIQLFKDTWTNSTPIGQVHKGFYKALQAV------FLNIENEINTLR--TNNQTIWVTGHSLGGALATLAAATLKFQGSEIHFNGLYTFGQPRLGDRMFANAFNKYLKQKCFRVVNNNDVVSRVPPQIFGYSHVGTLKYFDVNGKLHSDSSLSWWAKFWDRLEGRYDNGFDIIPDDISDHSMDIYQS 266          
BLAST of mRNA_C-tenellus_contig11626.1.1 vs. uniprot
Match: UPI0014450BD3 (lipase family protein n=1 Tax=Anabaena sp. UHCC 0187 TaxID=2590018 RepID=UPI0014450BD3)

HSP 1 Score: 151 bits (382), Expect = 4.580e-38
Identity = 89/242 (36.78%), Postives = 137/242 (56.61%), Query Frame = 2
Query:  182 EPSAKGFSVTNAHYFAHLSIVAYETKDIATSELCNMLGYT---DVFWLNSEDYSTQGYVAAQASHVVVVFRGTDQGADWWVNLDIFNKETKHGDVHKGFHTALNSIWGNRKDFKGILEIVKSFRAQTPDRPIFLSGHSLGGALASVAAAQLELDVPDVSVAGVYTIGSPRVFSREYATAYDKALEAKTFRAVNNNDFVTRVPHI-LQHVGTEVYIDPSGNIGPR---NWLDFFAGYWQSIWG 886
            EP+ + FS  N  Y A+ +  AY   D + ++L   LG+       +L   D  TQG +      ++V FRGT+   DW  N+ +     K G VH GF+++L S+W +       +  +KS R    ++PI+++GHSLGGALA++A A L+ ++P+  VAG+YT G PRV  + +A + DK ++ + FRAVNNND V RVP +   HVG  +Y D  GN+      +WL+  A +W+ + G
Sbjct:  113 EPNTRTFSPGNLAYLAYFAEAAYGNPDESKAKL-EKLGFQINGHEHYLEFPDTDTQGLMVGDDEKIIVAFRGTENLTDWLTNIKLLKASWKVGMVHAGFYSSLESLWPDA------IGRLKSLRNN--NQPIWITGHSLGGALATLAGATLDDEMPEFEVAGIYTFGQPRVGDQIFAQSLDKGMKERFFRAVNNNDIVPRVPSVKFNHVGNLLYFDCDGNLNQNMSLSWLNPKA-WWERLRG 344          
BLAST of mRNA_C-tenellus_contig11626.1.1 vs. uniprot
Match: A0A355CND3_9CYAN (Lipase_3 domain-containing protein n=3 Tax=unclassified Microcoleaceae TaxID=2053578 RepID=A0A355CND3_9CYAN)

HSP 1 Score: 152 bits (385), Expect = 8.560e-38
Identity = 88/264 (33.33%), Postives = 141/264 (53.41%), Query Frame = 2
Query:  182 EPSAKGFSVTNAHYFAHLSIVAYETKDIATSELCNMLGYT---DVFWLNSEDYSTQGYVAAQASHVVVVFRGTDQGADWWVNLDIFNKETKHGDVHKGFHTALNSIWGNRKDFKGILEIVKSFRAQTPDRPIFLSGHSLGGALASVAAAQLELDVPDVSVAGVYTIGSPRVFSREYATAYDKALEAKTFRAVNNNDFVTRVPHI-LQHVGTEVYIDPSGNIG---------PRNWLDFFAGYWQSIWGGSITDGFNDHAKELYK 934
            EP  + FS  N  Y A+ +   Y + D + ++L   LG+       +L   D  T+G +      +++ FRGT+   DW  NL +     K G VH+GF+ +L+S+W +       +  +KS R  T ++PI+++GHSLGGALA++A A L+ ++P+  +AG+YT G PRV    +A + DK ++ + FR+VNNND VT +P +   HVG  +Y D  GN+          P+ W + F  Y + +    + D   DH    Y+
Sbjct:  200 EPKTRTFSKGNLAYLAYFAEATYSSPDESKAKL-ESLGFQINGHEHYLEFPDTDTEGLMVGDDEKIIIAFRGTENLTDWQTNLKLLKTSWKVGMVHEGFYKSLDSLWPDA------IGRLKSLR--TNNQPIWITGHSLGGALATLAGATLDQEMPEYEIAGIYTFGQPRVGDLIFAQSLDKGMKERFFRSVNNNDVVTTIPSLKFSHVGNLLYFDSDGNLNENQLLSWLNPKTWCNRFRDYSKGVINLEL-DSIGDHRMGDYR 453          
BLAST of mRNA_C-tenellus_contig11626.1.1 vs. uniprot
Match: K9PYD0_9CYAN (Lipase class 3 n=1 Tax=Leptolyngbya sp. PCC 7376 TaxID=111781 RepID=K9PYD0_9CYAN)

HSP 1 Score: 147 bits (370), Expect = 2.140e-37
Identity = 94/272 (34.56%), Postives = 148/272 (54.41%), Query Frame = 2
Query:  191 AKGFSVTNAHYFAHLSIVAYETKDIATSELCNMLGY--TDV-FWLNSEDYSTQGYVAAQASHVVVVFRGTDQG-ADWWVNLDIFNK----ETKHGDVHKGFHTALNSIWGNRKDFKGILEIVKSFR-AQTPDRPIFLSGHSLGGALASVAAAQLELDVPDVSVAGVYTIGSPRVFSREYATAYDKALEAKTFRAVNNNDFVTRVPHIL---QHVGTEVYIDPSGNIGPRNWLDFFAGYWQSIWG------GSITDGFNDHAKELYKAAFLAA 952
            AK  S  N  Y A+ + + Y++K    SEL   LG+  TD  F+L+S +  TQ +VA     ++V FRG+++  ADW  N     +    +   G VH+GF+ AL+S+W          E+ K  R  +T  + ++++GHSLGGALA++AAA+L +D P ++V G+YT G PR+ +  +A  ++  L+  +FR VNNND VTRVP  +    H+G  +Y D  G +     L +++ +W  + G         TDG  DH+   Y+   + A
Sbjct:    9 AKSLSKMNMLYLANCAKLVYQSKAKIESELTK-LGFDLTDKNFFLSSTETDTQCFVAGDRRKIIVAFRGSERKIADWATNAKAIQRHWTDDQDDGKVHRGFYRALDSLWD---------ELEKEIRNLRTDSQTLWITGHSLGGALATLAAARLHIDSPKIAVNGLYTFGQPRIGNNRFAKVFNSKLKNISFRCVNNNDVVTRVPPQIFNYSHIGKLMYFDAKGKLRNDRNLSWWSRFWDRVEGRYDDIFDLDTDGIGDHSMAEYERLAIKA 270          
BLAST of mRNA_C-tenellus_contig11626.1.1 vs. uniprot
Match: A0A6H5KWV7_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWV7_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.930e-36
Identity = 99/313 (31.63%), Postives = 150/313 (47.92%), Query Frame = 2
Query:  101 FQINFTTRSVTMQDKVGQFEPIGHYKLEPSAKG--FSVTNAHYFAHLSIVAYETKDIATSELCNM--LGYTDVFWLNSED-----------YSTQGYVAAQASHVVVVFRGTDQGADWWVNLDIFNKETKHG--------DVHKGFHTALNSIWGNRKDF-KGILEIVKSF-RAQTPDRPIFLSGHSLGGALASVAAAQLELDVPDVSVAGVYTIGSPRVFSREYATAYDKAL------EAKTFRAVNNNDFVTRVP-HILQHVGTEVYIDPSGNIGPRNWLDFFAGYWQSIWGGSITDGFNDHAKELYKAAF 943
            F +N   R+           P+   +L+P  K   FS  N  +F+ +S + Y  +    S +     LGY    W  ++              T+ +VAA    ++VVFRG+ +  DW  N ++  +             DVH+GF  A+ ++W        G+  I+K+  + +   R ++L+GHSLGGALA+VAAA+L   + DV ++G+YTIGSPRVF    A  ++  +      + K FR  NNND VTR P    +HVGTE+Y D  G +     LD   G + ++   S+ DG NDH    Y   F
Sbjct:   33 FTVNSPVRNDVTISSFAPSAPVSEVELKPDVKATSFSAQNGFFFSKMSKLVYSPRIEVESAMQGKDGLGYEHFHWFEADPAVSGASIWDRIQDTEAFVAANDDVILVVFRGSSELTDWTTNFNLVRRLVPSDWLLDGLGCDVHQGFDDAVETVWNPGSAHPSGMRNIIKTLCKEEGKHRKLYLAGHSLGGALATVAAARLAF-MDDVKISGIYTIGSPRVFGENMADRFNAKMNDGTRMKDKYFRCRNNNDLVTRGPLRPYKHVGTEIYFDRFGGLSTSTLLDRILGRFSALLRFSLVDGANDHGAGEYIRLF 344          
BLAST of mRNA_C-tenellus_contig11626.1.1 vs. uniprot
Match: A0A1Q4R7D5_9CYAN (Lipase n=1 Tax=Limnothrix rosea IAM M-220 TaxID=454133 RepID=A0A1Q4R7D5_9CYAN)

HSP 1 Score: 144 bits (363), Expect = 2.140e-36
Identity = 95/271 (35.06%), Postives = 147/271 (54.24%), Query Frame = 2
Query:  176 KLEPSAKGFSVTNAHYFAHLSIVAYETKDIATSELCNMLGYTDV----FWLNSEDYSTQGYVAAQASHVVVVFRGTDQG-ADWWVNLDI----FNKETKHGDVHKGFHTALNSIWGNRKDFKGILEIVKSFRA-QTPDRPIFLSGHSLGGALASVAAAQLELDVPDVSVAGVYTIGSPRVFSREYATAYDKALEAKTFRAVNNNDFVTRVPHIL---QHVGTEVYIDPSGNIGPRNWLDFFAGYWQSIWG------GSITDGFNDHAKELY 931
            +  P AK  S  N    A+ + + Y+ K    + L N LG+ D+    F+L++ D  TQ +V      +++ FRG+++  ADW  N       F+++   G VH+GF+ ALNS+W          E+    +A +T ++ I+L+GHSLGGALA++A A+L LD   + V+G+YT G PRV S++++ A++  L+  TFR VNNND VTRVP  +    HVG  +Y D  G +     L ++A +W  + G          DG  DH+   Y
Sbjct:    4 RFNPRAKSLSKANLVCLAYCANLIYQPKQKIEASLKN-LGF-DLEGRNFFLSNPDTDTQCFVVGDRQKIIIAFRGSERKIADWATNTKAIRTNFSEDKTLGTVHRGFNAALNSLWP---------ELETEIQALRTANQTIWLTGHSLGGALATLATAKLHLDNSQIPVSGLYTFGQPRVGSQKFSIAFNSQLKNITFRCVNNNDVVTRVPPQIFGYSHVGRLMYFDARGRLRNDRNLSWWARFWDRLEGRYRDVFDLDPDGIGDHSMAEY 263          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11626.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4H8_9PHAE1.430e-4435.86Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
UPI001C49A6C72.350e-4336.80lipase family protein n=1 Tax=Marinospirillum perl... [more]
D8LDK8_ECTSI3.360e-4136.00Putative lipase n=2 Tax=Ectocarpus siliculosus Tax... [more]
A0A1X7AEQ2_9GAMM6.520e-3934.60Lipase (Class 3) n=1 Tax=Parendozoicomonas haliclo... [more]
A0A7R6W869_9GAMM9.860e-3934.69Triacylglycerol lipase n=1 Tax=Methyloprofundus sp... [more]
UPI0014450BD34.580e-3836.78lipase family protein n=1 Tax=Anabaena sp. UHCC 01... [more]
A0A355CND3_9CYAN8.560e-3833.33Lipase_3 domain-containing protein n=3 Tax=unclass... [more]
K9PYD0_9CYAN2.140e-3734.56Lipase class 3 n=1 Tax=Leptolyngbya sp. PCC 7376 T... [more]
A0A6H5KWV7_9PHAE1.930e-3631.63Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A1Q4R7D5_9CYAN2.140e-3635.06Lipase n=1 Tax=Limnothrix rosea IAM M-220 TaxID=45... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11626contigC-tenellus_contig11626:2..3305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LDK3
PFAMsLipase_3
Model size1331
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576,GO:0005615,GO:0044421
Exons6
Evalue4.56e-50
EggNOG OGsKOG4569@1|root,KOG4569@2759|Eukaryota
Descriptionphospholipase A1 activity
Cds size837
COG categoryG
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11626.1.1prot_C-tenellus_contig11626.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11626 363..2886 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.2295053-UTR-C-tenellus_contig11626:1..3621680789187.2295053-UTR-C-tenellus_contig11626:1..362Choristocarpus tenellus KU2346UTRC-tenellus_contig11626 2..362 -
1680789187.3001022-UTR-C-tenellus_contig11626:2886..29351680789187.3001022-UTR-C-tenellus_contig11626:2886..2935Choristocarpus tenellus KU2346UTRC-tenellus_contig11626 2887..2935 -
1680789187.310668-UTR-C-tenellus_contig11626:3221..33051680789187.310668-UTR-C-tenellus_contig11626:3221..3305Choristocarpus tenellus KU2346UTRC-tenellus_contig11626 3222..3305 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.2388952-CDS-C-tenellus_contig11626:362..5101680789187.2388952-CDS-C-tenellus_contig11626:362..510Choristocarpus tenellus KU2346CDSC-tenellus_contig11626 363..510 -
1680789187.2475948-CDS-C-tenellus_contig11626:1326..14671680789187.2475948-CDS-C-tenellus_contig11626:1326..1467Choristocarpus tenellus KU2346CDSC-tenellus_contig11626 1327..1467 -
1680789187.2627566-CDS-C-tenellus_contig11626:1827..20451680789187.2627566-CDS-C-tenellus_contig11626:1827..2045Choristocarpus tenellus KU2346CDSC-tenellus_contig11626 1828..2045 -
1680789187.2725608-CDS-C-tenellus_contig11626:2423..25611680789187.2725608-CDS-C-tenellus_contig11626:2423..2561Choristocarpus tenellus KU2346CDSC-tenellus_contig11626 2424..2561 -
1680789187.281624-CDS-C-tenellus_contig11626:2694..28861680789187.281624-CDS-C-tenellus_contig11626:2694..2886Choristocarpus tenellus KU2346CDSC-tenellus_contig11626 2695..2886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11626.1.1

>prot_C-tenellus_contig11626.1.1 ID=prot_C-tenellus_contig11626.1.1|Name=mRNA_C-tenellus_contig11626.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=279bp
MQDKVGQFEPIGHYKLEPSAKGFSVTNAHYFAHLSIVAYETKDIATSELC
NMLGYTDVFWLNSEDYSTQGYVAAQASHVVVVFRGTDQGADWWVNLDIFN
KETKHGDVHKGFHTALNSIWGNRKDFKGILEIVKSFRAQTPDRPIFLSGH
SLGGALASVAAAQLELDVPDVSVAGVYTIGSPRVFSREYATAYDKALEAK
TFRAVNNNDFVTRVPHILQHVGTEVYIDPSGNIGPRNWLDFFAGYWQSIW
GGSITDGFNDHAKELYKAAFLAAISADV*
back to top

mRNA from alignment at C-tenellus_contig11626:2..3305-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11626.1.1 ID=mRNA_C-tenellus_contig11626.1.1|Name=mRNA_C-tenellus_contig11626.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3304bp|location=Sequence derived from alignment at C-tenellus_contig11626:2..3305- (Choristocarpus tenellus KU2346)
AAGGCACAAGGGGGAGGATGCTTTTGGATCGAGCGTTTGGATAGTTGAGG GTTTGGTGATGAGCACTATTATGTCTCTCTAGTGGTATGTCCAATAGTCG TCGTATGCTCGATAGCGATGGTGTACAATCGTGTATGGTGTGCTTGCCTG TTGTCTCACGTGAGGTGGTCTTCCCTTTCTGTATGTTGGGTTGGTGTTTG ACTTTCAATAATGATACTGGCGAAGTTACCTTGCACAGTCTTTGGATTGC CTGGGTCGCCTGGATTGAACGTTTTTCCTTCTTTCGACGATTTTTCCACG CATTTATGTGCGCGCTGTCTACCCGCTGTTGCCCGCTGTTGTCACACCAC ATGTCTTGTGTTCTCGTTAGCCACCAGAAAGACTTTTTCCAGATCAATTT CACAACCAGGAGTGTGACAATGCAAGACAAGGTAGGCCAGTTCGAGCCGA TTGGCCATTATAAACTGGAGCCTTCGGCTAAAGGTTTCTCAGTGACCAAC GCGCACTACTTTGCACACCTTAGTATTGTGGCTTACGAGACAAAAGATAT CGCTACATCTGAGCTCTGCAACATGCTCGGGTACACAGATGTCTTTTGGC TCAACTCTGAGGTGAGGCGAAGAATTTTGTCTGTGAAGAGTTGGAATGAG TGTTAGAACGGTGGCTTGTACCCAATTGACTAATTTTCTTTATTGGATCT CCCACGGAATTCGTTCTCTCACGCCCCTCCTACCCTCTCTCCAGGATTAC AGTACCCAAGGCTATGTAGCTGCCCAAGCTAGTCATGTGGTAGTGGTCTT CCGCGGAACTGACCAAGGTGCAGACTGGTGGGTAAACCTCGACATCTTTA ACAAGGAGACAAAACATGGTGATGTCCACAAGGTGAGATGAGGAGATATG TGATTGTTGCAACGGTTGAACTTTGAGATCATGGTTTGATGTGCTGAGGG CGAAATGATGAATGAGAAAGATCGATTGGGAAAGGTATCTTTCTGCAACT CCTCGTCCTTTGTAAGTAAGACCTCAGGTTTGACTGTTGGCATCATTATT CCTGTTGTGCTTCTGTCCATCCTGGCTACCTTCTAGACATTAATTGGTGT ATTCCAAGACCATCAGGTCAACCTTCCTCACGCCACACATTCTATTCCTC CTTGCCCCCTGTCTACATCACACCCGTCATGTGAGATCGAGCCTTCTATC CCTTGAACCTTCCTACTGGTGTCACGTTCTCCCCACAATGCTCATTGCAA CCTTTCCCAGGGCTTCCACACTGCTCTGAACAGCATTTGGGGCAATCGTA AGGACTTTAAGGGTATCCTTGAGATTGTGAAGTCATTTCGAGCACAAACG CCGGACAGACCAATTTTCCTAAGTGGCCACTCGCTTGGTGGAGCATTAGC ATCTGTTGCCGCAGCGCAACTGGAGCTTGACGTTCCTGACGTGTCAGTAG CAGGCGTTTACACCATTGGAAGCCCAAGGTACACATACCTTGATATTATA AGTACACGAAAATGTGCTGGATGATTATCATGTAGGTCAAAAGATGAGTG ATGATTAATACTCCAGCATGTGTAAGTACCTTTACCAAGTGATAACTAAA TTTCTGTACCATATAACATAATACTCGAAGGTATGTCACGACCACAGCAC TGGAGATAAAAACATCGTCAACACTCTAGTCCAAAACATTTGTCTCGAAC CACTCAAGTTCCAAGGGTAGGTGACTACTTTTTATAATGTTGGATGCCCG GTTGCTTATGTTGTTATCAATATCCTGAAACGCGTCGCTTTCCTGCTCTC CTCTCTCCCTTTTTGTTGTGTACCGTCTCCTCTCTCAGGGTGTTCAGTCG TGAGTATGCAACTGCTTATGATAAGGCCCTCGAGGCCAAGACGTTCCGAG CGGTCAACAACAATGACTTCGTCACCCGGGTTCCCCATATTCTGCAGCAT GTGGGCACTGAGGTCTACATCGACCCAAGGTAATTCTCCCCAAAAATAGT ACACGTATAGGTCAACTTTGTTTGTTTGAAAGGTATGGTAGGCCATAGTT TTCCAAGAGTGGCGCGTCCCTTTGCTGGATAGTGCTGTCTACCAATAATG GAGAGGGAGCGATGATTGTTGTAATCCACCATTTTCTCCATGGTTGGGAC CTCATCTTGGTTACTTTTCCTCACTAACCTCCTCGATTGAGGCTCAAAGT ATCTGGGAGGGGGTAGCCGCTGTCCATTTGGGGCAAATTTGTTCATCTTG CGATTTTGGGGTGATTTGGTTGCATACGTCGGATGGATAATGTAAGTGCA CTTTTCCTGGTTATGCCCCAAATGGACACCCTGGTGCAGACCACCCCCCC TCAGATACTTTGGGTCTGATTTTTTTGGCGGCTTCATCAGCTTTGTCACA TTTCAAGAGAAAAGGAGAAAGCATTATTCTCCCCCCTCAAAAGTGGTCGT GGTTGTTTTTGCTGGAGGTGTTTTGGGTTCAAGACTCCCAAAGTAGTTTG CATAGCCCTTTTTGCCAAAAGTGTATTTAATCTCTTCCACATTGTTTTTG TCCGCAAAAACATAGTTCCAACAAATGTTTGAAGACTGCTATCAATGGTT ATGGTAGTATGTTACGACTGTAGAGCTCCAGTTACACCCAGGCAGTACAG CTTACTGGAAAAAATCCCATTGGGACATCCCCCTATATCTTTATGTCCCC CCCCTCATCATTTCCCCCCCCCTCTTTGCATCTGTTTTGTCTTGTGCTCT ATTCCCTTCCCCTGCTTGCCACTCCCCATAAATATCAAACTCCAGCGGAA ATATTGGGCCTCGCAACTGGCTAGACTTCTTTGCTGGTTACTGGCAATCA ATATGGGGCGGAAGTATAACTGATGGGTTCAATGATCATGCGAAAGAGCT TTATAAGGCAGCATTCTTGGCTGCCATAAGTGCTGACGTATAACCGATGG GTTCAATGATCACGCAAAAGACTGTATGAGGCAGCGTTCTTGACTGTCAT AAGTGCTGACATATCTTGATACCTTTAAGAGAGGAACTAGCTGATGACCA AGGTTAGATTGCTTGAATTGATGTGGGCTAGGTATGTCTCCACACAGTAG GATGTGTGTGGGTGTGAAGTGCTGTTTGGCAATTGTAATAAAATAATCAA GAAAGCAGGATAATAACGTGTGTGGGTCAATTTCTTGAAACAGTTTCTGG CTTTGGGGGCGAGTGTTACTTTGTTGTGTATATGTTACAGGCGCCCCTCA ATGCTCACCTTCCAGGATGTACAACTCAAATCCAACGACCTCAAAACGAC GCTA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11626:2..3305-

>mRNA_C-tenellus_contig11626.1.1 ID=mRNA_C-tenellus_contig11626.1.1|Name=mRNA_C-tenellus_contig11626.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=837bp|location=Sequence derived from alignment at C-tenellus_contig11626:2..3305- (Choristocarpus tenellus KU2346)
ATGCAAGACAAGGTAGGCCAGTTCGAGCCGATTGGCCATTATAAACTGGA
GCCTTCGGCTAAAGGTTTCTCAGTGACCAACGCGCACTACTTTGCACACC
TTAGTATTGTGGCTTACGAGACAAAAGATATCGCTACATCTGAGCTCTGC
AACATGCTCGGGTACACAGATGTCTTTTGGCTCAACTCTGAGGATTACAG
TACCCAAGGCTATGTAGCTGCCCAAGCTAGTCATGTGGTAGTGGTCTTCC
GCGGAACTGACCAAGGTGCAGACTGGTGGGTAAACCTCGACATCTTTAAC
AAGGAGACAAAACATGGTGATGTCCACAAGGGCTTCCACACTGCTCTGAA
CAGCATTTGGGGCAATCGTAAGGACTTTAAGGGTATCCTTGAGATTGTGA
AGTCATTTCGAGCACAAACGCCGGACAGACCAATTTTCCTAAGTGGCCAC
TCGCTTGGTGGAGCATTAGCATCTGTTGCCGCAGCGCAACTGGAGCTTGA
CGTTCCTGACGTGTCAGTAGCAGGCGTTTACACCATTGGAAGCCCAAGGG
TGTTCAGTCGTGAGTATGCAACTGCTTATGATAAGGCCCTCGAGGCCAAG
ACGTTCCGAGCGGTCAACAACAATGACTTCGTCACCCGGGTTCCCCATAT
TCTGCAGCATGTGGGCACTGAGGTCTACATCGACCCAAGCGGAAATATTG
GGCCTCGCAACTGGCTAGACTTCTTTGCTGGTTACTGGCAATCAATATGG
GGCGGAAGTATAACTGATGGGTTCAATGATCATGCGAAAGAGCTTTATAA
GGCAGCATTCTTGGCTGCCATAAGTGCTGACGTATAA
back to top