mRNA_C-tenellus_contig11620.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11620.1.1
Unique NamemRNA_C-tenellus_contig11620.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11620.1.1 vs. uniprot
Match: A0A6H5JR82_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR82_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 4.920e-60
Identity = 100/165 (60.61%), Postives = 127/165 (76.97%), Query Frame = 1 
Query:    1 DVNEATTKLFGEFLRQKLLSGMPKHNPAKELVRRSFRYLYRGQGHVLTFAEFKEGLANSFGSLIPLSIIQATFDMFDTEPRTWQLDFDEFYTWLETGERNLNSHGICREQPERAALKSL-----KARKPHSNDTSGDFKASVKDIDGRTGMSIEQKDRATLKVHW 480
            D+NE  +KL G +LR+ LL  +  + PAKELV+RSFR+L+RGQGH+LTF EFKEGL+N+FG+LIPL +IQATFD+FDTEPRTWQLDFDEF  WL+TGER LNSHG+ ++  +  +         KARKP SNDTSG+F +S+KD +G   MS+EQ DRA LKV +
Sbjct:  147 DINETMSKLLGGYLREHLLDNITCNEPAKELVKRSFRHLHRGQGHLLTFDEFKEGLSNTFGALIPLQLIQATFDIFDTEPRTWQLDFDEFCHWLDTGERVLNSHGVMKKPVKTDSAPPAEGAPPKARKPRSNDTSGEFNSSIKDCNG-VSMSMEQADRAQLKVEY 310
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BLAST of mRNA_C-tenellus_contig11620.1.1 vs. uniprot
Match: D7G7F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F4_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 2.190e-56
Identity = 101/167 (60.48%), Postives = 127/167 (76.05%), Query Frame = 1 
Query:    1 DVNEATTKLFGEFLRQKLLSGMPKHNPAKELVRRSFRYLYRGQGHVLTFAEFKEGLANSFGSLIPLSIIQATFDMFDTEPRTWQLDFDEFYTWLETGERNLNSHGICREQPERAALKSL-----KARKPHSNDTSGDFKASVKDIDGRTGMSIEQKDRATLKVHWLQ 486
            D NE  +KL G +LR  LL+ +  + PAKELV+RSFR+L+RGQGHVLTF EFKEGL+N+FG+LIPL +IQATFD+FDTEPRTWQLDFDEF  WL+TGER LNSHG+ ++  +  +         KARKP SNDTSG+F +S+KD +G   MS+EQ DRA LK H ++
Sbjct:  133 DTNETKSKLLGGYLRDHLLANITCNEPAKELVKRSFRHLHRGQGHVLTFDEFKEGLSNTFGALIPLQLIQATFDIFDTEPRTWQLDFDEFCHWLDTGERVLNSHGVMKKPVKTNSAPPAEGAPPKARKPRSNDTSGEFNSSIKDCNG-VSMSMEQADRAQLKAHLMK 298
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BLAST of mRNA_C-tenellus_contig11620.1.1 vs. uniprot
Match: A0A836C9J2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9J2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.580e-16
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:  130 GHVLTFAEFKEGLANSFGSLIPLSIIQATFDMFDTEPRTWQLDFDEFYTWLETGER 297
            GHVLTF EFK+GL  +FG  +   I++ATFD+FDT PRTWQLDFDEF  WL+TG+R
Sbjct:  212 GHVLTFEEFKDGLGQAFGGQLHPDIVRATFDLFDTVPRTWQLDFDEFCAWLDTGKR 267
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11620.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JR82_9PHAE4.920e-6060.61Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G7F4_ECTSI2.190e-5660.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C9J2_9STRA2.580e-1666.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11620contigC-tenellus_contig11620:2974..4041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size489
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_000050.1
Cds size489
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.0033085-CDS-C-tenellus_contig11620:2973..30831680789187.0033085-CDS-C-tenellus_contig11620:2973..3083Choristocarpus tenellus KU2346CDSC-tenellus_contig11620 2974..3083 +
1680789187.0135093-CDS-C-tenellus_contig11620:3315..34061680789187.0135093-CDS-C-tenellus_contig11620:3315..3406Choristocarpus tenellus KU2346CDSC-tenellus_contig11620 3316..3406 +
1680789187.0251203-CDS-C-tenellus_contig11620:3537..36971680789187.0251203-CDS-C-tenellus_contig11620:3537..3697Choristocarpus tenellus KU2346CDSC-tenellus_contig11620 3538..3697 +
1680789187.0348318-CDS-C-tenellus_contig11620:3913..40411680789187.0348318-CDS-C-tenellus_contig11620:3913..4041Choristocarpus tenellus KU2346CDSC-tenellus_contig11620 3914..4041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11620.1.1prot_C-tenellus_contig11620.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11620 2974..4041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11620.1.1

>prot_C-tenellus_contig11620.1.1 ID=prot_C-tenellus_contig11620.1.1|Name=mRNA_C-tenellus_contig11620.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=163bp
DVNEATTKLFGEFLRQKLLSGMPKHNPAKELVRRSFRYLYRGQGHVLTFA
EFKEGLANSFGSLIPLSIIQATFDMFDTEPRTWQLDFDEFYTWLETGERN
LNSHGICREQPERAALKSLKARKPHSNDTSGDFKASVKDIDGRTGMSIEQ
KDRATLKVHWLQ*
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mRNA from alignment at C-tenellus_contig11620:2974..4041+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11620.1.1 ID=mRNA_C-tenellus_contig11620.1.1|Name=mRNA_C-tenellus_contig11620.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1068bp|location=Sequence derived from alignment at C-tenellus_contig11620:2974..4041+ (Choristocarpus tenellus KU2346)
GATGTGAACGAGGCCACCACCAAACTCTTCGGAGAATTTCTGCGCCAAAA
GCTCTTATCCGGCATGCCGAAGCACAACCCTGCCAAGGAACTCGTCCGTC
GGTCCTTCAGGTGTGGAAATTTGGAGCTGTGATCCTCAACTTAGAGTCGG
TCTTCGCGGTCCTGTATTGTCCCCAAAGAAGTGATCGATGAATGCCAGCC
AGGCATATGTTGGGGCTCACCTATTGCCTGTTCCACCTAATACGATGGCT
TGCAGCAATTGCCCATATATCTTATGTCGAGTTCTCCCCCTGTGTCACAA
TGGTGCCTGGTGTTGAAACTTTGTTTGAACAAACTGCGGCAGGTACTTGT
ACCGTGGTCAGGGACATGTGCTCACATTTGCAGAGTTCAAGGAAGGCCTC
GCAAACTCTTTCGGGTCTCTCATTCCCCTCTCAGTAAGTGTATATGATTA
ATCTTTCAGTTATAACATCAAAATTGGAAGGTTGTTAAGTCATCATCGTC
AACAGGCAAGTAACACCATGGAACAGGATTGAACGACTACACCCTTCCTG
CATTGTTATCGCAGATTATTCAAGCAACATTTGACATGTTCGACACAGAA
CCCCGAACGTGGCAGTTAGACTTTGATGAGTTCTATACTTGGCTAGAGAC
TGGTGAACGTAATCTCAACAGCCATGGCATTTGCAGAGAGCAGCCTGAGA
GGGCAGCATTGAAGTCTCTGAAAGGTGGGATTGAATCAGGCTTGGCAAAG
AGAGCATTGGTCTACATTGCAAGCGTACTCCCTTCAACAAAAAAAGCAGG
GCAAGGATTTTATTGCAACTCTATGCAAGGTACTTTACTATAACTCTTTT
GACCTCAAGAGTAGTAATGAAAGCATCCATTAGTTCTTCTACCCTTGATC
TCTTATCCCTTACCATAATTTCCAATGTCAAATTTCCAAGCGCGCAAGCC
ACACTCTAACGACACTTCGGGAGATTTCAAGGCTAGTGTCAAGGACATCG
ATGGCCGCACAGGCATGAGTATTGAGCAGAAAGACCGTGCTACGCTGAAG
GTACATTGGTTGCAATAG
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Coding sequence (CDS) from alignment at C-tenellus_contig11620:2974..4041+

>mRNA_C-tenellus_contig11620.1.1 ID=mRNA_C-tenellus_contig11620.1.1|Name=mRNA_C-tenellus_contig11620.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=489bp|location=Sequence derived from alignment at C-tenellus_contig11620:2974..4041+ (Choristocarpus tenellus KU2346)
GATGTGAACGAGGCCACCACCAAACTCTTCGGAGAATTTCTGCGCCAAAA
GCTCTTATCCGGCATGCCGAAGCACAACCCTGCCAAGGAACTCGTCCGTC
GGTCCTTCAGGTACTTGTACCGTGGTCAGGGACATGTGCTCACATTTGCA
GAGTTCAAGGAAGGCCTCGCAAACTCTTTCGGGTCTCTCATTCCCCTCTC
AATTATTCAAGCAACATTTGACATGTTCGACACAGAACCCCGAACGTGGC
AGTTAGACTTTGATGAGTTCTATACTTGGCTAGAGACTGGTGAACGTAAT
CTCAACAGCCATGGCATTTGCAGAGAGCAGCCTGAGAGGGCAGCATTGAA
GTCTCTGAAAGCGCGCAAGCCACACTCTAACGACACTTCGGGAGATTTCA
AGGCTAGTGTCAAGGACATCGATGGCCGCACAGGCATGAGTATTGAGCAG
AAAGACCGTGCTACGCTGAAGGTACATTGGTTGCAATAG
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