mRNA_C-tenellus_contig1162.5.3 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig1162.5.3 vs. uniprot
Match: B7ZGM7_9PHAE (60S ribosomal protein L36 (Fragment) n=3 Tax=Phaeophyceae TaxID=2870 RepID=B7ZGM7_9PHAE) HSP 1 Score: 134 bits (336), Expect = 2.870e-33 Identity = 70/75 (93.33%), Postives = 74/75 (98.67%), Query Frame = 2 Query: 596 KLGKRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALQKREDIKEVYSQMRARQAL 820 +LGKRVK+VREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRAL KREDIKEVYS+MRARQA+ Sbjct: 35 RLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQAM 109
BLAST of mRNA_C-tenellus_contig1162.5.3 vs. uniprot
Match: F0YH51_AURAN (60S ribosomal protein L36 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH51_AURAN) HSP 1 Score: 119 bits (297), Expect = 3.590e-28 Identity = 59/75 (78.67%), Postives = 71/75 (94.67%), Query Frame = 2 Query: 596 KLGKRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALQKREDIKEVYSQMRARQAL 820 +L R K+VREVVREVAGL+PYEKRILDMIKTGGAS+EKR+YKFAK RLGTHKRA++KRED+K++Y+QMRARQA+ Sbjct: 21 RLSARTKVVREVVREVAGLVPYEKRILDMIKTGGASSEKRMYKFAKMRLGTHKRAIKKREDMKDIYAQMRARQAM 95
BLAST of mRNA_C-tenellus_contig1162.5.3 vs. uniprot
Match: A0A835YST3_9STRA (60S ribosomal protein L36 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST3_9STRA) HSP 1 Score: 116 bits (290), Expect = 3.790e-27 Identity = 59/76 (77.63%), Postives = 69/76 (90.79%), Query Frame = 2 Query: 596 KLGKRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALQKREDIKEVYSQMRARQALA 823 +LGKRV +VR+VVREVAGLMPYEKRILDMIK GGASAEKR+YKFAK+RLGTHKRAL KR+DIK++Y++ RA Q A Sbjct: 28 RLGKRVSVVRQVVREVAGLMPYEKRILDMIKVGGASAEKRMYKFAKKRLGTHKRALAKRDDIKDMYAKQRAHQTKA 103
BLAST of mRNA_C-tenellus_contig1162.5.3 vs. uniprot
Match: K8YZ07_NANGC (60S ribosomal protein L36 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZ07_NANGC) HSP 1 Score: 115 bits (288), Expect = 7.730e-27 Identity = 58/73 (79.45%), Postives = 69/73 (94.52%), Query Frame = 2 Query: 599 LGKRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALQKREDIKEVYSQMRARQA 817 L K+VKLVREVVR+V GLMPYEKRILD+IKTGG+ AEK++YKFAKRRLGTH+RAL+KRE+IKE YS++RARQA Sbjct: 32 LVKKVKLVREVVRDVVGLMPYEKRILDVIKTGGSGAEKKVYKFAKRRLGTHRRALKKREEIKEYYSKLRARQA 104
BLAST of mRNA_C-tenellus_contig1162.5.3 vs. uniprot
Match: A0A6V1KD91_HETAK (60S ribosomal protein L36 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KD91_HETAK) HSP 1 Score: 115 bits (287), Expect = 1.090e-26 Identity = 56/76 (73.68%), Postives = 69/76 (90.79%), Query Frame = 2 Query: 596 KLGKRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALQKREDIKEVYSQMRARQALA 823 K GKRV +VREV+REV+GLMPYE+R+LDM+KTGG +EKRIYKFAKRRLGTHKRAL KRE++K +Y ++RARQA+A Sbjct: 32 KKGKRVAVVREVIREVSGLMPYERRMLDMVKTGGVGSEKRIYKFAKRRLGTHKRALAKREEVKGIYGKIRARQAMA 107
BLAST of mRNA_C-tenellus_contig1162.5.3 vs. uniprot
Match: A0A7S2ICR1_9STRA (60S ribosomal protein L36 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2ICR1_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.270e-25 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 2 Query: 599 LGKRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALQKREDIKEVYSQMRARQA 817 LGKRV L RE+ REVAGL PYE+RILDMIKTGG++A+KRIYKFAK+RLG+HKRAL KREDIKEV +Q RA+QA Sbjct: 32 LGKRVSLCREIAREVAGLSPYERRILDMIKTGGSAADKRIYKFAKKRLGSHKRALAKREDIKEVNAQQRAKQA 104
BLAST of mRNA_C-tenellus_contig1162.5.3 vs. uniprot
Match: B8BZT3_THAPS (60S ribosomal protein L36 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZT3_THAPS) HSP 1 Score: 112 bits (279), Expect = 1.270e-25 Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 2 Query: 596 KLGKRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALQKREDIKEVYSQMRARQA 817 +LGKR L RE+ REVAGL PYE+RILDMIKTGG+SA+KRIYKFAKRRLG+HKRAL KREDIK V S+MRA+QA Sbjct: 31 RLGKRTALCREIAREVAGLSPYERRILDMIKTGGSSADKRIYKFAKRRLGSHKRALAKREDIKAVNSKMRAKQA 104
BLAST of mRNA_C-tenellus_contig1162.5.3 vs. uniprot
Match: A0A7R9ZLZ7_9STRA (60S ribosomal protein L36 n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLZ7_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.570e-25 Identity = 60/79 (75.95%), Postives = 71/79 (89.87%), Query Frame = 2 Query: 581 KNGTKKLGKRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALQKREDIKEVYSQMRARQA 817 K GT LG+R K+VRE++REVAGL PYE+RILDMIKTGG++A+KRIYKFAKRRLG+HKRA+ KREDIKEV +Q RARQA Sbjct: 87 KKGT--LGERTKMVRELIREVAGLSPYERRILDMIKTGGSAADKRIYKFAKRRLGSHKRAVVKREDIKEVNAQQRARQA 163
BLAST of mRNA_C-tenellus_contig1162.5.3 vs. uniprot
Match: A0A5D6XYW5_9STRA (60S ribosomal protein L36 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYW5_9STRA) HSP 1 Score: 112 bits (279), Expect = 3.380e-25 Identity = 55/72 (76.39%), Postives = 67/72 (93.06%), Query Frame = 2 Query: 602 GKRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALQKREDIKEVYSQMRARQA 817 GK++KLVR VVREV GLMPYEKRILDMIK+GG+SAEKRIYKF+K+RLGTH+RALQKRE++K Y+ +RA+QA Sbjct: 66 GKKIKLVRSVVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGTHRRALQKREEMKAYYAALRAKQA 137
BLAST of mRNA_C-tenellus_contig1162.5.3 vs. uniprot
Match: K0T5I4_THAOC (60S ribosomal protein L36 n=2 Tax=Thalassiosirales TaxID=33847 RepID=K0T5I4_THAOC) HSP 1 Score: 110 bits (275), Expect = 4.390e-25 Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 2 Query: 596 KLGKRVKLVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALQKREDIKEVYSQMRARQA 817 KLGKR L RE+ REVAGL PYE+RILDMIKTGG++A+KRIYKFAKRRLG+HKRA+ KREDIK + S+MRA+QA Sbjct: 31 KLGKRTALCREIAREVAGLSPYERRILDMIKTGGSAADKRIYKFAKRRLGSHKRAVAKREDIKAINSKMRAKQA 104 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1162.5.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig1162.5.3 >prot_C-tenellus_contig1162.5.3 ID=prot_C-tenellus_contig1162.5.3|Name=mRNA_C-tenellus_contig1162.5.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=108bp MNTHKFWRVRHRRLVALQGPSRTMLCKNGTKKLGKRVKLVREVVREVAGLback to top mRNA from alignment at C-tenellus_contig1162:9281..13430+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig1162.5.3 ID=mRNA_C-tenellus_contig1162.5.3|Name=mRNA_C-tenellus_contig1162.5.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4150bp|location=Sequence derived from alignment at C-tenellus_contig1162:9281..13430+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig1162:9281..13430+ >mRNA_C-tenellus_contig1162.5.3 ID=mRNA_C-tenellus_contig1162.5.3|Name=mRNA_C-tenellus_contig1162.5.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=324bp|location=Sequence derived from alignment at C-tenellus_contig1162:9281..13430+ (Choristocarpus tenellus KU2346)back to top |