mRNA_C-tenellus_contig11618.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11618.3.1
Unique NamemRNA_C-tenellus_contig11618.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11618.3.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 6.830e-15
Identity = 67/209 (32.06%), Postives = 101/209 (48.33%), Query Frame = 1 
Query:   28 AAEGPGFREACRLFRDEMAALGHAPSAINAVVENVMGEVPRLVKSASGLGGVVGKGSQTGLFE-GSQVQSRDGEGEAVLPDATMAEKEKVVTVDNVGTTVGGLGVDCASIATEAEIED-AEEGVVTRAMLLLPFCRMHDVGGDGGVDALXXXXXXXSEIEAPAAL---SVQVSGLTFSHHRLTYDHRVSATADGIAILDEDGIRILEAG 639
            AA   G+R+ACRLFRDEM ALG+   +++ VVE ++ E    +++ +   G  G G +   F+  + +  R G+ +    +ATM  +  V   D  G               +A++ +  E G+   +   +P       GGDG V             E P  L   +V+ SGLT +  RLTYD R +ATA+ I + D DG+RIL AG
Sbjct: 1619 AAASTGYRQACRLFRDEMGALGYDQGSLDGVVEALL-ETTARIRNPATAAGHEGSGKEAAFFQYPASMPGRSGQAQQ-QQEATMPGRATVEEADAPGE--------------QADVRELVEAGMAVLSDASVPAKGGSGSGGDGAVG------------EEPVLLDIAAVEASGLTLALTRLTYDTRFTATAEAIVVRDSDGVRILSAG 1799
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BLAST of mRNA_C-tenellus_contig11618.3.1 vs. uniprot
Match: A0A6H5KKF1_9PHAE (VPS13 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.470e-14
Identity = 68/209 (32.54%), Postives = 102/209 (48.80%), Query Frame = 1 
Query:   28 AAEGPGFREACRLFRDEMAALGHAPSAINAVVENVMGEVPRLVK-SASGLGGVVGKGSQTGLFE-GSQVQSRDGEGEAVLPDATMAEKEKVVTVDNVGTTVGGLGVDCASIATEAEIEDAEEGVVTRAMLLLPFCRMHDVGGDGGVDALXXXXXXXSEIEAPAAL---SVQVSGLTFSHHRLTYDHRVSATADGIAILDEDGIRILEAG 639
            AA   G+R+ACRLFRDEM ALG+   +++ VVE ++    R+   +A+   G  G G ++   +  + +  R G+ +    + TM  ++ V   D  G             A   E+ +A   V++ A +  P       GGDG V             E P  L   +V+ SGLT +  RLTYD R++ATA+ I + D DGIR+L AG
Sbjct: 1523 AAASTGYRQACRLFRDEMGALGYDQGSLDGVVEALLETTARIRDPAATAAAGHEGSGKESAFLQYPASMPGRSGQAQQ-QQETTMPGRDTVEEADAPGEP-----------ADVRELVEAGMAVLSDASV--PAEAGRGSGGDGAVG------------EEPVLLDIAAVEASGLTLALTRLTYDTRLTATAEAIIVRDSDGIRVLSAG 1705
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11618.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Y9_ECTSI6.830e-1532.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKF1_9PHAE5.470e-1432.54VPS13 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11618contigC-tenellus_contig11618:2001..3611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8Y9
PFAMsSHR-BD,VPS13_mid_rpt
Model size732
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.12e-15
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
Cds size729
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789186.8384247-CDS-C-tenellus_contig11618:2002..22061680789186.8384247-CDS-C-tenellus_contig11618:2002..2206Choristocarpus tenellus KU2346CDSC-tenellus_contig11618 2003..2206 -
1680789186.8497736-CDS-C-tenellus_contig11618:3086..36111680789186.8497736-CDS-C-tenellus_contig11618:3086..3611Choristocarpus tenellus KU2346CDSC-tenellus_contig11618 3087..3611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11618.3.1prot_C-tenellus_contig11618.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11618 2003..3611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11618.3.1

>prot_C-tenellus_contig11618.3.1 ID=prot_C-tenellus_contig11618.3.1|Name=mRNA_C-tenellus_contig11618.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=243bp
LRLAEGGRGAAEGPGFREACRLFRDEMAALGHAPSAINAVVENVMGEVPR
LVKSASGLGGVVGKGSQTGLFEGSQVQSRDGEGEAVLPDATMAEKEKVVT
VDNVGTTVGGLGVDCASIATEAEIEDAEEGVVTRAMLLLPFCRMHDVGGD
GGVDALNSLNSLNSEIEAPAALSVQVSGLTFSHHRLTYDHRVSATADGIA
ILDEDGIRILEAGCVANPSEGGVVDSQRGAATSSGGGGRGGKG
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mRNA from alignment at C-tenellus_contig11618:2001..3611-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11618.3.1 ID=mRNA_C-tenellus_contig11618.3.1|Name=mRNA_C-tenellus_contig11618.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1611bp|location=Sequence derived from alignment at C-tenellus_contig11618:2001..3611- (Choristocarpus tenellus KU2346)
TTGAGGCTGGCGGAGGGCGGTAGGGGTGCTGCAGAGGGTCCTGGGTTTAG
AGAGGCATGCAGGCTGTTCCGGGATGAGATGGCAGCCCTAGGGCATGCCC
CCTCAGCGATCAATGCTGTGGTGGAGAATGTGATGGGGGAGGTCCCCAGG
CTTGTGAAGAGTGCTTCTGGGCTTGGGGGGGTTGTGGGAAAAGGATCTCA
GACGGGGCTGTTTGAAGGGTCTCAAGTGCAGTCACGGGATGGTGAAGGTG
AAGCTGTTCTTCCCGATGCAACTATGGCCGAGAAAGAGAAAGTGGTCACT
GTTGATAATGTTGGGACCACTGTTGGAGGGTTAGGGGTAGATTGTGCGTC
CATTGCAACAGAGGCAGAGATAGAGGATGCTGAGGAGGGAGTGGTGACCC
GGGCTATGCTTCTTCTTCCCTTTTGCCGGATGCATGATGTTGGTGGGGAT
GGAGGGGTCGATGCCTTGAACTCCTTGAACTCCTTGAACTCAGAGATAGA
GGCACCTGCTGCGCTGTCCGTGCAGGCAAGTTTTTTTACTTTTTTTACTT
TCTTTCTTTCTTTCTTTCTGGTGTTTCTCTTTCTTATCTTATCGATATTT
GCTTTTGAGTATCTTTTTTTTGTTTTGTTTTTTGATGGGGCCATAGGGTC
ATGAAAGATTTTTGAAATCAGGCAGGGATGGGGGATGTGCATGTCTGTGG
ACGCACAAGTCCACGAGAGGGAATTGAACCAAATTCAAACATACCTTACA
GGTTGGCAGCACTGGACACCCCATAGGTGGGAGAGGTGAGGAATACCCCA
TCCAAATGCCCTTTTGCACCCTGTCCTTACCCCATAATGCTGTCGTACCT
CATCCTTGGTTACAGGTCCCACGTACTCTTATCTACTCTGTACCACGTGT
GATATACCTCACCTTGCATGTTGACTAACCTAGTATTATGTTATCCTTAC
ATTGAATGTGCTGATACACTATATAACATAGGTTTCATATACGTTTATAT
TTGGTTTGGTACAATACCATTCATAACGTGGAAACGGTATGATGAGCCAG
TGTTGGAAACCTGGCGGGCAATTGATGATTTAGTGAATGCTGTTGTACCA
TGTAACTCAACCATACAATGTAACTCAGTCAGTGGCTTTGGGCGACGAGC
CTTACTTCCGGTAAGCTTCTCAACATTCTATACAGCGTAGCATCAACGGC
GGCAGTGTCTCTCGATTGGTTTGGATACCCAGGACCCGATCACCTCCACA
CCAGACACATCCGCTAGGCCGTCACCAGCACAGACATTGGCCACGAAGGC
ATACCTGCCGTTTTTGTCAATGTCTGGGCTCCAATGTACGCCTCCCCGAA
TCTTTTCTGTACTCCCTTGGCTCTTTTGCTGATTTTCTATGATTTAATGT
CACAGGTGTCTGGGCTTACTTTCTCACACCATCGCCTCACTTATGATCAC
CGTGTGAGTGCCACTGCCGATGGCATTGCTATCCTAGATGAGGATGGCAT
ACGCATCCTTGAAGCTGGTTGTGTGGCAAATCCCTCGGAAGGCGGTGTCG
TTGACTCTCAGCGGGGCGCTGCCACTTCTTCGGGGGGAGGGGGGAGAGGT
GGCAAGGGCAC
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Coding sequence (CDS) from alignment at C-tenellus_contig11618:2001..3611-

>mRNA_C-tenellus_contig11618.3.1 ID=mRNA_C-tenellus_contig11618.3.1|Name=mRNA_C-tenellus_contig11618.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=729bp|location=Sequence derived from alignment at C-tenellus_contig11618:2001..3611- (Choristocarpus tenellus KU2346)
TTGAGGCTGGCGGAGGGCGGTAGGGGTGCTGCAGAGGGTCCTGGGTTTAG
AGAGGCATGCAGGCTGTTCCGGGATGAGATGGCAGCCCTAGGGCATGCCC
CCTCAGCGATCAATGCTGTGGTGGAGAATGTGATGGGGGAGGTCCCCAGG
CTTGTGAAGAGTGCTTCTGGGCTTGGGGGGGTTGTGGGAAAAGGATCTCA
GACGGGGCTGTTTGAAGGGTCTCAAGTGCAGTCACGGGATGGTGAAGGTG
AAGCTGTTCTTCCCGATGCAACTATGGCCGAGAAAGAGAAAGTGGTCACT
GTTGATAATGTTGGGACCACTGTTGGAGGGTTAGGGGTAGATTGTGCGTC
CATTGCAACAGAGGCAGAGATAGAGGATGCTGAGGAGGGAGTGGTGACCC
GGGCTATGCTTCTTCTTCCCTTTTGCCGGATGCATGATGTTGGTGGGGAT
GGAGGGGTCGATGCCTTGAACTCCTTGAACTCCTTGAACTCAGAGATAGA
GGCACCTGCTGCGCTGTCCGTGCAGGTGTCTGGGCTTACTTTCTCACACC
ATCGCCTCACTTATGATCACCGTGTGAGTGCCACTGCCGATGGCATTGCT
ATCCTAGATGAGGATGGCATACGCATCCTTGAAGCTGGTTGTGTGGCAAA
TCCCTCGGAAGGCGGTGTCGTTGACTCTCAGCGGGGCGCTGCCACTTCTT
CGGGGGGAGGGGGGAGAGGTGGCAAGGGC
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