mRNA_C-tenellus_contig11618.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11618.1.1
Unique NamemRNA_C-tenellus_contig11618.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11618.1.1 vs. uniprot
Match: A0A6H5KKF1_9PHAE (VPS13 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.300e-8
Identity = 46/134 (34.33%), Postives = 66/134 (49.25%), Query Frame = 2 
Query:  293 RPMMSTNIQFSVVSFNCLLSLDSRPLAKLSVSSLAMETVSESWW---------VRCRGGVRVRVSAGEESRDRGPTLAAGAAEAVAGAGINGVSRVRAMKWTQMSSMKFLRLNVDGLGLMDLTPDGQLHHEVIT 667
            RP +ST++   V  F CLLSL+SRPLA LS++ L  E     WW          R  G      ++     +     AA +   +  AG  G +R      T +    +LR ++ GL L+DLT DGQLH++VI+
Sbjct: 1922 RPSVSTSVHLQVREFRCLLSLESRPLASLSMTGLVFEASRSEWWDLDDIKACIFRDLGETNAAATSPRPGEESTGAAAAESKSMMPTAGWPGWTRDGGRHRTALG---YLRASLQGLELLDLTADGQLHNQVIS 2052
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11618.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKF1_9PHAE2.300e-834.33VPS13 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11618contigC-tenellus_contig11618:102..1153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1033
Hectar predicted targeting categoryother localisation
Exons2
Cds size684
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789186.7303555-UTR-C-tenellus_contig11618:101..3981680789186.7303555-UTR-C-tenellus_contig11618:101..398Choristocarpus tenellus KU2346UTRC-tenellus_contig11618 102..398 -
1680789186.7647355-UTR-C-tenellus_contig11618:1101..11531680789186.7647355-UTR-C-tenellus_contig11618:1101..1153Choristocarpus tenellus KU2346UTRC-tenellus_contig11618 1102..1153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789186.7434485-CDS-C-tenellus_contig11618:398..4671680789186.7434485-CDS-C-tenellus_contig11618:398..467Choristocarpus tenellus KU2346CDSC-tenellus_contig11618 399..467 -
1680789186.7532778-CDS-C-tenellus_contig11618:486..11011680789186.7532778-CDS-C-tenellus_contig11618:486..1101Choristocarpus tenellus KU2346CDSC-tenellus_contig11618 487..1101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11618.1.1prot_C-tenellus_contig11618.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11618 399..1101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11618.1.1

>prot_C-tenellus_contig11618.1.1 ID=prot_C-tenellus_contig11618.1.1|Name=mRNA_C-tenellus_contig11618.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=228bp
MSQWPPPSPAATAPDFGGITSPTPPTGHIGVHSGSRVRVDRSRHATGGDY
ATVDRRGNSWDCVQDGGWVGFHEGLAFELPRPMMSTNIQFSVVSFNCLLS
LDSRPLAKLSVSSLAMETVSESWWVRCRGGVRVRVSAGEESRDRGPTLAA
GAAEAVAGAGINGVSRVRAMKWTQMSSMKFLRLNVDGLGLMDLTPDGQLH
HEVITGAMEGRGRGGAAPLVPVMAVGK*
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mRNA from alignment at C-tenellus_contig11618:102..1153-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11618.1.1 ID=mRNA_C-tenellus_contig11618.1.1|Name=mRNA_C-tenellus_contig11618.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1052bp|location=Sequence derived from alignment at C-tenellus_contig11618:102..1153- (Choristocarpus tenellus KU2346)
GGGGACTTGGGCTGAGGGGTCAGAGGTAGGTGACTTGAAGAGAGGCACCC
CGATGTCGCAGTGGCCGCCACCCTCTCCAGCTGCAACCGCCCCTGATTTC
GGAGGTATCACGAGCCCCACACCTCCTACAGGCCACATCGGTGTCCACAG
TGGTAGCCGGGTGAGAGTGGACAGATCTCGACATGCTACGGGTGGTGACT
ATGCTACTGTGGACAGGAGGGGAAATAGCTGGGACTGTGTGCAGGATGGG
GGTTGGGTCGGTTTCCACGAGGGTTTGGCGTTTGAACTCCCAAGACCAAT
GATGAGCACCAACATCCAGTTCAGTGTGGTGTCTTTCAATTGCTTGCTCT
CCCTGGACAGTCGTCCGCTGGCGAAACTGTCAGTGAGTAGCCTTGCCATG
GAGACCGTCTCTGAGTCTTGGTGGGTCCGGTGCCGTGGTGGAGTCAGGGT
TAGGGTGTCAGCGGGGGAAGAATCAAGAGACAGGGGACCAACGCTGGCAG
CAGGAGCTGCAGAGGCTGTTGCTGGTGCAGGGATCAATGGAGTGAGCAGG
GTCAGGGCCATGAAGTGGACTCAGATGAGCTCCATGAAGTTCCTCCGCTT
AAACGTGGATGGCCTTGGGTTGATGGACCTTACACCAGATGGTCAGCTGC
ACCATGAGGTCATCACCCTCAAAGGACAACAACAACGGGGCCATGGAGGG
CAGGGGGAGGGGAGGGGCAGCACCCCTGGTCCCAGTGATGGCCGTAGGCA
AATGAGGGGTGGATCTGAGCGCCCACAGCCATTACCGAGAGGTTCCCCAG
CTCTGTCTATTGAGCTTATCCCGGCTACCCCTTCTACTTCTGGGCTTAGC
GATGGAGGAAGTGACCATGAGGATGCTTGGACAAGTATGGCAGGTGATGA
GGGGGGTAAGGTGAGGCGTGAATCAAAGATTAATGTGTCTCTGCAAGGCC
TTCGCCTTTGCTTTCTCAAGAGGTTTCTGGCGGAGCTCATCAAGTATGCC
GGCAAGGATGGTCTTGGCCCTGTTTTGGCACTTGCTAAGGGTACAACTGA
AG
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Coding sequence (CDS) from alignment at C-tenellus_contig11618:102..1153-

>mRNA_C-tenellus_contig11618.1.1 ID=mRNA_C-tenellus_contig11618.1.1|Name=mRNA_C-tenellus_contig11618.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=684bp|location=Sequence derived from alignment at C-tenellus_contig11618:102..1153- (Choristocarpus tenellus KU2346)
ATGTCGCAGTGGCCGCCACCCTCTCCAGCTGCAACCGCCCCTGATTTCGG
AGGTATCACGAGCCCCACACCTCCTACAGGCCACATCGGTGTCCACAGTG
GTAGCCGGGTGAGAGTGGACAGATCTCGACATGCTACGGGTGGTGACTAT
GCTACTGTGGACAGGAGGGGAAATAGCTGGGACTGTGTGCAGGATGGGGG
TTGGGTCGGTTTCCACGAGGGTTTGGCGTTTGAACTCCCAAGACCAATGA
TGAGCACCAACATCCAGTTCAGTGTGGTGTCTTTCAATTGCTTGCTCTCC
CTGGACAGTCGTCCGCTGGCGAAACTGTCAGTGAGTAGCCTTGCCATGGA
GACCGTCTCTGAGTCTTGGTGGGTCCGGTGCCGTGGTGGAGTCAGGGTTA
GGGTGTCAGCGGGGGAAGAATCAAGAGACAGGGGACCAACGCTGGCAGCA
GGAGCTGCAGAGGCTGTTGCTGGTGCAGGGATCAATGGAGTGAGCAGGGT
CAGGGCCATGAAGTGGACTCAGATGAGCTCCATGAAGTTCCTCCGCTTAA
ACGTGGATGGCCTTGGGTTGATGGACCTTACACCAGATGGTCAGCTGCAC
CATGAGGTCATCACCGGGGCCATGGAGGGCAGGGGGAGGGGAGGGGCAGC
ACCCCTGGTCCCAGTGATGGCCGTAGGCAAATGA
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