mRNA_C-tenellus_contig11611.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11611.1.1
Unique NamemRNA_C-tenellus_contig11611.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11611.1.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.260e-36
Identity = 68/148 (45.95%), Postives = 84/148 (56.76%), Query Frame = 1
Query:    1 HIPKTMIIAANAHPDSTHSFDGKLGVWRVCAPKTADRISKNHKEG-----------------------DLYEQDCTLDHLWHRKW*TE-LLPAIKSKMSWLQGKRIVIQQDSAILHTGKGNSEILSGTGKTEGGSIRLVMQPCNSPDL 372
            H+PK M+I ANA PD  H FDGK+G+WR+C  +TA R SK                            + YE DCT+D  W++ W  + LLPAIK KM WL+ KR+V+QQD A  HTGKGN EIL+  G   G  + LV QP  SPDL
Sbjct:  190 HLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDL 337          
BLAST of mRNA_C-tenellus_contig11611.1.1 vs. uniprot
Match: A0A6G0WM27_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM27_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.710e-12
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 1
Query:    4 IPKTMIIAANAHP---DSTHSF-DGKLGVWRVCAPKTADRISKNHKEGDLYEQDCTL-DHLWHRKW*TELLPAIKSKMSWLQGKRIVIQQDSAILHTGKGNSEILSGTGKTEGGSIRLVMQPCNSPDL 372
            I K M +AA A P   ++T+ F DGKLG+W     + A R SKN     L     ++   ++     + +LPAIK KMS+++  +I IQQD+A  H+ K  +   +  G  +G ++ L  QP NSPD 
Sbjct:  214 ITKVMFLAAVARPRHDEATNQFFDGKLGMWPFVIQEPAKRTSKNRARDTLISTPISVTSEVYFDMLVSNVLPAIKRKMSFMKNSKIFIQQDNAGPHS-KSVNHRFNQVGSYDGWNVALKNQPANSPDF 340          
BLAST of mRNA_C-tenellus_contig11611.1.1 vs. uniprot
Match: A0A090N4M5_OSTTA (Transposase, Tc1-like n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N4M5_OSTTA)

HSP 1 Score: 63.2 bits (152), Expect = 4.070e-9
Identity = 44/130 (33.85%), Postives = 66/130 (50.77%), Query Frame = 1
Query:    4 IPKTMIIAANAHPDSTHSFDGKLGVWRVCAPKTADRISKNHKEGDLYEQDCTLD-HLWHRKW*TELLPAIKSKMSWLQGKRIVIQQDSAILHTGKGNSEILSGTGKT-------EGGSIRLVMQPCNSPD 369
            + K M + A A P     FDG++G++R    K A R SK HK GD+Y++DC +D  L++     +L+P I  KM+      + +Q D A  H      + L+  GK        +   I+ V+QP NSPD
Sbjct:  281 VQKVMGLRAVARPCG--DFDGRIGMYRCAKKKVAQRNSKFHKRGDVYDEDCDVDAKLFYELVTEKLIPDIYRKMADFD--IVFVQMDGARPHVKC--MDALNAAGKERKRIDVKQMPMIKFVLQPANSPD 404          
BLAST of mRNA_C-tenellus_contig11611.1.1 vs. uniprot
Match: A0A2E6C2P6_9EURY (Uncharacterized protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E6C2P6_9EURY)

HSP 1 Score: 62.0 bits (149), Expect = 6.770e-9
Identity = 42/128 (32.81%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    4 IPKTMIIAANAHPDSTHSFDGKLGVWRVCAPKTADRISKNHKEGDLYEQDCTLD-HLWHRKW*TELLPAIKSKMSWLQGKRIVIQQDSAILHTGK-GNSEILSGTGKTEGGS----IRLVMQPCNSPD 369
            + K M + A A P     F+G+LG++R    K A+R SK H+ GD+Y++DC +D  +++     +L+P I  KM+      + +Q D+A  H  +  + E +    K   G     I+ V+QP NSPD
Sbjct:   37 VQKVMGLCAVARPYG--DFNGRLGMYRCARKKVAERNSKYHERGDVYDEDCEVDGDMFYEIVTKQLIPDIYDKMADFDV--VFVQMDNARPHVKRIADLERIGKKRKRIKGKQMPLIKFVLQPANSPD 160          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11611.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.260e-3645.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0WM27_9STRA4.710e-1235.94Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A090N4M5_OSTTA4.070e-933.85Transposase, Tc1-like n=2 Tax=Ostreococcus tauri T... [more]
A0A2E6C2P6_9EURY6.770e-932.81Uncharacterized protein (Fragment) n=1 Tax=Euryarc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11611contigC-tenellus_contig11611:3626..3999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog70448.A0A090MBK9
PFAMsHTH_Tnp_Tc3_2
Model size374
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.43e-06
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789186.5973332-UTR-C-tenellus_contig11611:3625..38101680789186.5973332-UTR-C-tenellus_contig11611:3625..3810Choristocarpus tenellus KU2346UTRC-tenellus_contig11611 3626..3810 -
1680789186.6148229-UTR-C-tenellus_contig11611:3984..39991680789186.6148229-UTR-C-tenellus_contig11611:3984..3999Choristocarpus tenellus KU2346UTRC-tenellus_contig11611 3985..3999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789186.6068122-CDS-C-tenellus_contig11611:3810..39841680789186.6068122-CDS-C-tenellus_contig11611:3810..3984Choristocarpus tenellus KU2346CDSC-tenellus_contig11611 3811..3984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11611.1.1prot_C-tenellus_contig11611.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11611 3811..3984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11611.1.1

>prot_C-tenellus_contig11611.1.1 ID=prot_C-tenellus_contig11611.1.1|Name=mRNA_C-tenellus_contig11611.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=58bp
MIIAANAHPDSTHSFDGKLGVWRVCAPKTADRISKNHKEGDLYEQDCTLD
HLWHRKW*
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mRNA from alignment at C-tenellus_contig11611:3626..3999-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11611.1.1 ID=mRNA_C-tenellus_contig11611.1.1|Name=mRNA_C-tenellus_contig11611.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=374bp|location=Sequence derived from alignment at C-tenellus_contig11611:3626..3999- (Choristocarpus tenellus KU2346)
CATATCCCCAAAACCATGATCATTGCAGCCAACGCCCACCCAGATTCGAC TCACAGCTTTGATGGAAAGCTTGGTGTTTGGCGTGTGTGTGCGCCAAAAA CGGCGGACAGGATAAGCAAGAACCATAAAGAGGGGGATCTGTATGAGCAG GACTGTACTTTAGACCATTTGTGGCACAGGAAGTGGTAAACGGAGTTGCT GCCTGCAATCAAGTCCAAGATGTCTTGGTTGCAGGGGAAGCGCATTGTCA TTCAGCAAGACAGTGCCATCCTCCACACAGGCAAGGGCAACTCAGAAATT TTGTCAGGGACAGGGAAGACTGAGGGGGGGTCGATTAGGCTTGTGATGCA GCCATGTAACTCCCCCGATCTCAG
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Coding sequence (CDS) from alignment at C-tenellus_contig11611:3626..3999-

>mRNA_C-tenellus_contig11611.1.1 ID=mRNA_C-tenellus_contig11611.1.1|Name=mRNA_C-tenellus_contig11611.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=174bp|location=Sequence derived from alignment at C-tenellus_contig11611:3626..3999- (Choristocarpus tenellus KU2346)
ATGATCATTGCAGCCAACGCCCACCCAGATTCGACTCACAGCTTTGATGG
AAAGCTTGGTGTTTGGCGTGTGTGTGCGCCAAAAACGGCGGACAGGATAA
GCAAGAACCATAAAGAGGGGGATCTGTATGAGCAGGACTGTACTTTAGAC
CATTTGTGGCACAGGAAGTGGTAA
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