mRNA_C-tenellus_contig11607.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11607.1.1
Unique NamemRNA_C-tenellus_contig11607.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11607.1.1 vs. uniprot
Match: A0A6J2W9K4_CHACN (hyaluronan synthase 1-like n=2 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2W9K4_CHACN)

HSP 1 Score: 72.8 bits (177), Expect = 6.440e-13
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:   55 LFERNPLVLANVFYPLLYLTTLLPIKIFALFTMNNTGWGTSSRKKLVTNYCPVLSVVLWQLNLLAALVWHFFGRPM 282
            L  RNP++L    Y + Y+++LLPIK FA+FTMN T WGTS R+KLV NY P++ + +W   LL  L +  +   +
Sbjct:  438 LLRRNPIMLFMSLYSVQYMSSLLPIKFFAIFTMNKTSWGTSGRRKLVGNYIPLVPLSVWAAVLLGGLGYTIYKETI 513
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BLAST of mRNA_C-tenellus_contig11607.1.1 vs. uniprot
Match: A0A8C4XE74_ERPCA (Hyaluronan synthase 1-like n=4 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4XE74_ERPCA)

HSP 1 Score: 69.7 bits (169), Expect = 7.780e-12
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:   55 LFERNPLVLANVFYPLLYLTTLLPIKIFALFTMNNTGWGTSSRKKLVTNYCPVLSVVLWQLNLLAALVWHFF 270
            L  +N +++    Y +LY+T+LLP K FA+ TMN + WGTS RKK+V NY P+L + +W L LL  L++  +
Sbjct:  429 LLRKNFIMVFMSLYSMLYMTSLLPAKYFAILTMNKSSWGTSGRKKIVGNYIPLLPLSIWGLILLCGLIYAIY 500
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BLAST of mRNA_C-tenellus_contig11607.1.1 vs. uniprot
Match: A0A0P7WRT0_SCLFO (Hyaluronan synthase 1-like (Fragment) n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7WRT0_SCLFO)

HSP 1 Score: 68.9 bits (167), Expect = 1.440e-11
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:   55 LFERNPLVLANVFYPLLYLTTLLPIKIFALFTMNNTGWGTSSRKKLVTNYCPVLSVVLWQLNLLAALVWHFF 270
            L  +N +++    Y +LY+T+LLP K FAL TMN + WGTS R+K+V NY PVL + +W   LL+ L ++ +
Sbjct:  408 LLRKNIIMIFMSLYSVLYMTSLLPAKYFALLTMNKSNWGTSGRRKIVGNYIPVLPLSVWAAILLSGLCYNIY 479
[Close]
BLAST of mRNA_C-tenellus_contig11607.1.1 vs. uniprot
Match: C3ZWY7_BRAFL (Uncharacterized protein (Fragment) n=6 Tax=Branchiostoma TaxID=7737 RepID=C3ZWY7_BRAFL)

HSP 1 Score: 68.6 bits (166), Expect = 1.980e-11
Identity = 28/70 (40.00%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:   61 ERNPLVLANVFYPLLYLTTLLPIKIFALFTMNNTGWGTSSRKKLVTNYCPVLSVVLWQLNLLAALVWHFF 270
             +NP+++    Y +LY+T+LLP K +A+ T+N +GWGTS RKK+VTN+ P++ ++ W L L   + +  +
Sbjct:  442 RKNPIMIFMSVYSMLYMTSLLPTKYWAILTINKSGWGTSGRKKIVTNFIPLVPLIAWFLILAGGIAFSIY 511
[Close]
BLAST of mRNA_C-tenellus_contig11607.1.1 vs. uniprot
Match: A0A6J2W8L1_CHACN (hyaluronan synthase 1-like n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2W8L1_CHACN)

HSP 1 Score: 68.6 bits (166), Expect = 1.990e-11
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:   61 ERNPLVLANVFYPLLYLTTLLPIKIFALFTMNNTGWGTSSRKKLVTNYCPVLSVVLWQLNLLAALVWHFFGR 276
             R+P+++    Y +LY+T+LLP+K FA+ TMN   WGTS R+K+V NY P+L + +W   LL+ L +  +  
Sbjct:  450 RRSPIMVFMSLYSVLYMTSLLPVKYFAILTMNKRSWGTSGRRKMVGNYIPLLPLSVWAAILLSGLGYTIYNE 521
[Close]
BLAST of mRNA_C-tenellus_contig11607.1.1 vs. uniprot
Match: C3ZWY6_BRAFL (Uncharacterized protein (Fragment) n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZWY6_BRAFL)

HSP 1 Score: 68.2 bits (165), Expect = 2.710e-11
Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   61 ERNPLVLANVFYPLLYLTTLLPIKIFALFTMNNTGWGTSSRKKLVTNYCPVLSVVLWQLNL 243
             RNP+++    Y +LY+T+LLP K +A+ T+N  GWGTS RKK+VTN+ P++ ++ W L L
Sbjct:  441 RRNPIMIFMSVYSMLYMTSLLPAKYWAILTINKNGWGTSGRKKIVTNFIPLVPLIAWFLIL 501
[Close]
BLAST of mRNA_C-tenellus_contig11607.1.1 vs. uniprot
Match: A0A8C4F638_DICLA (Hyaluronan synthase 1 n=2 Tax=Moronidae TaxID=42148 RepID=A0A8C4F638_DICLA)

HSP 1 Score: 67.4 bits (163), Expect = 5.060e-11
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:   61 ERNPLVLANVFYPLLYLTTLLPIKIFALFTMNNTGWGTSSRKKLVTNYCPVLSVVLWQLNLLAALVWHFFGRPML 285
             RN +++    Y ++Y+T+LLP K FA+ TMN + WGTS R+K+V NY P+L + +W   LL+ L +  +    L
Sbjct:  447 RRNMVMVFMSLYSVMYMTSLLPAKYFAILTMNKSSWGTSGRRKIVGNYMPLLPLSVWATILLSGLTYRIYKESQL 521
[Close]
BLAST of mRNA_C-tenellus_contig11607.1.1 vs. uniprot
Match: C3ZWX3_BRAFL (Uncharacterized protein (Fragment) n=3 Tax=Branchiostoma TaxID=7737 RepID=C3ZWX3_BRAFL)

HSP 1 Score: 67.0 bits (162), Expect = 6.820e-11
Identity = 26/48 (54.17%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   94 YPLLYLTTLLPIKIFALFTMNNTGWGTSSRKKLVTNYCPVLSVVLWQL 237
            Y  LY+T+L+PIK +A+ T+N TGWGTS RKK+VTN+ P++ +++W L
Sbjct:  411 YSFLYMTSLVPIKFWAIMTINKTGWGTSGRKKIVTNFMPIVPLIMWAL 458
[Close]
BLAST of mRNA_C-tenellus_contig11607.1.1 vs. uniprot
Match: C3ZWY8_BRAFL (Uncharacterized protein n=5 Tax=Branchiostoma TaxID=7737 RepID=C3ZWY8_BRAFL)

HSP 1 Score: 67.0 bits (162), Expect = 6.900e-11
Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   61 ERNPLVLANVFYPLLYLTTLLPIKIFALFTMNNTGWGTSSRKKLVTNYCPVLSVVLWQLNLLAALVWHFF 270
             R+P ++    Y +LY+T+LLP K +A+ T+N +GWGTS RKK+VTN+ P++ ++ W L L   L +  +
Sbjct:  442 RRSPTMVFMSIYSILYMTSLLPAKYWAMLTINKSGWGTSGRKKIVTNFIPLVPLIAWALILGGGLAYTIY 511
[Close]
BLAST of mRNA_C-tenellus_contig11607.1.1 vs. uniprot
Match: A0A6P3WG21_CLUHA (hyaluronan synthase 3 n=8 Tax=Osteoglossocephalai TaxID=1489341 RepID=A0A6P3WG21_CLUHA)

HSP 1 Score: 67.0 bits (162), Expect = 6.900e-11
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:   46 TFILFERNPLVLANV-FYPLLYLTTLLPIKIFALFTMNNTGWGTSSRKKLVTNYCPVLSVVLWQLNLLAALVWHFF 270
            T+  F R  LV+  +  Y LLY+++LLP KIFALFT+N  GWGTS R+K+V N+   + V +W L LL  + +  +
Sbjct:  433 TYACFLRGSLVMIFMSLYSLLYMSSLLPAKIFALFTINKAGWGTSGRRKIVVNFIGAIPVTVWGLILLGGVAYTIY 508
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11607.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J2W9K4_CHACN6.440e-1344.74hyaluronan synthase 1-like n=2 Tax=Chanos chanos T... [more]
A0A8C4XE74_ERPCA7.780e-1244.44Hyaluronan synthase 1-like n=4 Tax=Erpetoichthys c... [more]
A0A0P7WRT0_SCLFO1.440e-1144.44Hyaluronan synthase 1-like (Fragment) n=2 Tax=Scle... [more]
C3ZWY7_BRAFL1.980e-1140.00Uncharacterized protein (Fragment) n=6 Tax=Branchi... [more]
A0A6J2W8L1_CHACN1.990e-1141.67hyaluronan synthase 1-like n=1 Tax=Chanos chanos T... [more]
C3ZWY6_BRAFL2.710e-1147.54Uncharacterized protein (Fragment) n=2 Tax=Branchi... [more]
A0A8C4F638_DICLA5.060e-1140.00Hyaluronan synthase 1 n=2 Tax=Moronidae TaxID=4214... [more]
C3ZWX3_BRAFL6.820e-1154.17Uncharacterized protein (Fragment) n=3 Tax=Branchi... [more]
C3ZWY8_BRAFL6.900e-1141.43Uncharacterized protein n=5 Tax=Branchiostoma TaxI... [more]
A0A6P3WG21_CLUHA6.900e-1144.74hyaluronan synthase 3 n=8 Tax=Osteoglossocephalai ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11607contigC-tenellus_contig11607:91..378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog176946.XP_007441093.1
Preferred nameHAS1
PFAMsChitin_synth_2,Glyco_tranf_2_3
Model size288
Max annot lvl33208|Metazoa
KEGG koko:K00752
KEGG TC4.D.1.1.10,4.D.1.1.4,4.D.1.1.5
Hectar predicted targeting categorysignal peptide
GOsGO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006082,GO:0006807,GO:0007155,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009719,GO:0009987,GO:0010033,GO:0010762,GO:0010764,GO:0016020,GO:0016021,GO:0016043,GO:0016051,GO:0016053,GO:0016740,GO:0016757,GO:0016758,GO:0019752,GO:0022607,GO:0022610,GO:0030198,GO:0030203,GO:0030212,GO:0030213,GO:0030334,GO:0030336,GO:0031224,GO:0031226,GO:0032879,GO:0033692,GO:0034637,GO:0034645,GO:0036119,GO:0036120,GO:0040012,GO:0040013,GO:0042221,GO:0043062,GO:0043170,GO:0043436,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044425,GO:0044459,GO:0044464,GO:0045226,GO:0046379,GO:0046394,GO:0048519,GO:0048523,GO:0050501,GO:0050789,GO:0050794,GO:0050896,GO:0051270,GO:0051271,GO:0051716,GO:0065007,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071840,GO:0071944,GO:0085029,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903510,GO:2000145,GO:2000146
Exons1
Evalue1.75e-12
EggNOG OGsCOG1215@1|root,KOG2571@2759|Eukaryota,38FM0@33154|Opisthokonta,3BGSK@33208|Metazoa,3D1VH@33213|Bilateria,489HR@7711|Chordata,48USR@7742|Vertebrata
EC2.4.1.212
DescriptionHyaluronan synthase 1
Cds size288
COG categoryM
CAZyGT2
BRITEko00000,ko01000,ko01003,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789186.322337-CDS-C-tenellus_contig11607:90..3781680789186.322337-CDS-C-tenellus_contig11607:90..378Choristocarpus tenellus KU2346CDSC-tenellus_contig11607 91..378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11607.1.1prot_C-tenellus_contig11607.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11607 91..378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11607.1.1

>prot_C-tenellus_contig11607.1.1 ID=prot_C-tenellus_contig11607.1.1|Name=mRNA_C-tenellus_contig11607.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=96bp
IAIITVVLPFLRSLVTFILFERNPLVLANVFYPLLYLTTLLPIKIFALFT
MNNTGWGTSSRKKLVTNYCPVLSVVLWQLNLLAALVWHFFGRPML*
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mRNA from alignment at C-tenellus_contig11607:91..378+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11607.1.1 ID=mRNA_C-tenellus_contig11607.1.1|Name=mRNA_C-tenellus_contig11607.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=288bp|location=Sequence derived from alignment at C-tenellus_contig11607:91..378+ (Choristocarpus tenellus KU2346)
ATCGCGATCATTACTGTGGTGCTGCCGTTCTTGCGTTCTCTCGTCACCTT
CATCCTGTTCGAAAGGAACCCACTCGTTTTAGCCAACGTGTTTTACCCGT
TGCTCTACCTCACCACCCTGCTGCCCATCAAGATCTTTGCCTTGTTCACG
ATGAACAACACCGGCTGGGGCACCTCCTCGAGGAAGAAACTCGTGACCAA
CTACTGCCCAGTCTTGTCGGTGGTGTTGTGGCAGCTCAATTTGCTCGCAG
CACTTGTATGGCACTTCTTTGGGCGTCCTATGCTGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig11607:91..378+

>mRNA_C-tenellus_contig11607.1.1 ID=mRNA_C-tenellus_contig11607.1.1|Name=mRNA_C-tenellus_contig11607.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=288bp|location=Sequence derived from alignment at C-tenellus_contig11607:91..378+ (Choristocarpus tenellus KU2346)
ATCGCGATCATTACTGTGGTGCTGCCGTTCTTGCGTTCTCTCGTCACCTT
CATCCTGTTCGAAAGGAACCCACTCGTTTTAGCCAACGTGTTTTACCCGT
TGCTCTACCTCACCACCCTGCTGCCCATCAAGATCTTTGCCTTGTTCACG
ATGAACAACACCGGCTGGGGCACCTCCTCGAGGAAGAAACTCGTGACCAA
CTACTGCCCAGTCTTGTCGGTGGTGTTGTGGCAGCTCAATTTGCTCGCAG
CACTTGTATGGCACTTCTTTGGGCGTCCTATGCTGTAA
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