mRNA_C-tenellus_contig116.1.3 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig116.1.3
Unique NamemRNA_C-tenellus_contig116.1.3
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig116.1.3 vs. uniprot
Match: A0A6H5KNU9_9PHAE (CRIM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU9_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 1.850e-66
Identity = 117/202 (57.92%), Postives = 144/202 (71.29%), Query Frame = 2 
Query:  227 QLTTSLISECKALALGSHLTQAPDAYQLRIADDEWDPDLDFPELDSSATITDVGVDQFVLCPKGKVEPMLHIHITLHQGLHGPLTGTGAMEAPGAGASMTLEVDFKIPGGEDTHHLSIPLAVEVVP-DSMRFEELRPRGSGASGEDLEATQ------------------DGAVKLRNIDTGEEIALEEIDKRVPPAMDPSQL 775
            QL  +L+SECK+  LGS LTQ  D Y LR+ADD+WDPDLDFP LDSSA ITDVGVDQFVLC + ++EPMLHI I LH+GL+GPLTGTGAMEAPGAGAS+TLEVDF+ PG E THH+S+P+A E    D +RF +   RGS AS +  E  +                  + AVK+RN+DTGE+I L EI  RVPP++DP ++
Sbjct:  269 QLIRALVSECKSRDLGSELTQGADKYVLRMADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASITLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPGNKEQVVEEIGIEEAVKVRNMDTGEDITLAEIKDRVPPSLDPGEV 470
[Close]
BLAST of mRNA_C-tenellus_contig116.1.3 vs. uniprot
Match: D7FJ13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ13_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 2.550e-59
Identity = 102/173 (58.96%), Postives = 124/173 (71.68%), Query Frame = 2 
Query:  314 IADDEWDPDLDFPELDSSATITDVGVDQFVLCPKGKVEPMLHIHITLHQGLHGPLTGTGAMEAPGAGASMTLEVDFKIPGGEDTHHLSIPLAVEVVP-DSMRFEELRPRGSGASGEDLEATQ------------------DGAVKLRNIDTGEEIALEEIDKRVPPAMDPSQL 775
            +ADD+WDPDLDFP LDSSA ITDVGVDQFVLC + ++EPMLHI I LH+GL+GPLTGTGAMEAPGAGASMTLEVDF+ PG E THH+S+P+A E    D +RF +   RGS AS +  E  +                  + AVKLRN+DTGE+I L EI  RVPP++DP ++
Sbjct:    1 MADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASMTLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPSNKEKVVGEIGMEEAVKLRNMDTGEDITLAEIKDRVPPSLDPGEV 173
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig116.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNU9_9PHAE1.850e-6657.92CRIM domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FJ13_ECTSI2.550e-5958.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig116contigC-tenellus_contig116:4131..7851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size814
Hectar predicted targeting categorymitochondrion
Exons4
Ec32 ortholog descriptionStress-activated map kinase interacting 1
Ec32 orthologEc-07_004820.1
Cds size630
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig116.1.3prot_C-tenellus_contig116.1.3Choristocarpus tenellus KU2346polypeptideC-tenellus_contig116 4288..7824 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.4552479-UTR-C-tenellus_contig116:4130..42871680789185.4552479-UTR-C-tenellus_contig116:4130..4287Choristocarpus tenellus KU2346UTRC-tenellus_contig116 4131..4287 +
1680789185.5076258-UTR-C-tenellus_contig116:7824..78511680789185.5076258-UTR-C-tenellus_contig116:7824..7851Choristocarpus tenellus KU2346UTRC-tenellus_contig116 7825..7851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.4649987-CDS-C-tenellus_contig116:4287..44191680789185.4649987-CDS-C-tenellus_contig116:4287..4419Choristocarpus tenellus KU2346CDSC-tenellus_contig116 4288..4419 +
1680789185.4784214-CDS-C-tenellus_contig116:4614..47401680789185.4784214-CDS-C-tenellus_contig116:4614..4740Choristocarpus tenellus KU2346CDSC-tenellus_contig116 4615..4740 +
1680789185.4869058-CDS-C-tenellus_contig116:6878..70501680789185.4869058-CDS-C-tenellus_contig116:6878..7050Choristocarpus tenellus KU2346CDSC-tenellus_contig116 6879..7050 +
1680789185.4953518-CDS-C-tenellus_contig116:7624..78241680789185.4953518-CDS-C-tenellus_contig116:7624..7824Choristocarpus tenellus KU2346CDSC-tenellus_contig116 7625..7824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig116.1.3

>prot_C-tenellus_contig116.1.3 ID=prot_C-tenellus_contig116.1.3|Name=mRNA_C-tenellus_contig116.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=210bp
MSFQLVRVPSCRSLPRAIVLQSLQLTTSLISECKALALGSHLTQAPDAYQ
LRIADDEWDPDLDFPELDSSATITDVGVDQFVLCPKGKVEPMLHIHITLH
QGLHGPLTGTGAMEAPGAGASMTLEVDFKIPGGEDTHHLSIPLAVEVVPD
SMRFEELRPRGSGASGEDLEATQDGAVKLRNIDTGEEIALEEIDKRVPPA
MDPSQLLNF*
back to top

mRNA from alignment at C-tenellus_contig116:4131..7851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig116.1.3 ID=mRNA_C-tenellus_contig116.1.3|Name=mRNA_C-tenellus_contig116.1.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3721bp|location=Sequence derived from alignment at C-tenellus_contig116:4131..7851+ (Choristocarpus tenellus KU2346)
GGGGTAGAAGGCTTAACTGAAGACCCACACAGTCACCATGGGGCAGATGG
AAGCTCCGGCGGGTGCACGGTGAGATTTTGCCTTGAATACTATTGTTTAT
TAGACTGCAGTCTACACTGCCTTGTACTTAAGTCGTGGGAGGTGATCACA
CAGGTCTATGAGTTTCCAACTTGTGCGTGTGCCCTCGTGCCGTTCTCTTC
CACGTGCTATTGTTCTTCAGTCACTTCAGCTGACTACATCATTAATATCG
GAGTGCAAGGCCTTGGCACTTGGGAGTCATTTGACACAGGTGGGTTGTGC
CTGACGTTGTAGATGAATGCTTCTATTGCAACCTTCCTATGCATCATTAC
ATATGCCGTTATCCAGGATATTACACTCCCCCCTGTCACATCCCGCCATC
TATTTATGAGACTCGATTCTGCTACTGGGTAACCTTGTTGTTCCGTGTTG
ATTTGTTGATGCTGTTGCTGTGCTTGTGTCATAGGCACCAGATGCCTATC
AACTTCGAATAGCAGATGATGAGTGGGACCCAGACTTGGACTTTCCGGAG
CTGGATTCATCTGCAACTATAACGGATGTGGGAGTGGATCAATTTGTGCT
CTGCCCAAAGGTGCCTAGATGTCCCCTCTGGATATTACACATTGCACTGA
TTCTGGATTGGTTTCTCTGAAGAAGAGTGAGAACTGGATAATCATTGATG
ATGCAGCACTAACATGCATGATTAACTATTCCTCTTTTTTTTTTCTTATT
TACTTAATTTTTTACTATGAAATCACTCCTTGAGATGTTCCTTTTTTCAT
TTCCTGAGGTTTTACTTTTTATTGCTTCATTGGGGAATTGGGCTACATTT
CTTATGTTGCTACACTGTGGAATGCCATTGGGGACATGGATTGGAGATTG
ATTGTCATCAGGCTAAAGCCATTTCAAAACTGATAAGGAACCTTCGATAG
TAAGGGCCAAGTACCTTTGTCTTTTAAGTATCTTTGGTGGCAGCCTCCTT
GTTATGCTGTGTATGAGCCTATTAATCTTGCGCTAACAATATGCTGCATG
TAACCAGGTTGTATATATATATATATATATTTTATACCTATCTTCTCTTT
ACTTTTTTTTCTGTTACATCCCGTATGACAAAAGTCCAACAATACTGTTC
AAGATGCCTAGACAGAGGTAACTGTATTTTTCTGGATCAAGATAGTTCAA
CTGTCTAATGTGCTCATCAAAAGCACTCAAGTTAAGTGTTTGAAATATCA
TCAAATGGTGTGGAACAAAGTTTGATAGTTGGAGTATTTGCAAGATGAGG
GGTGAGGAAAGGTACTTTTTCGAGCTGATACTCTTCACCTAATTTTTGTG
TTTTCCAAGTCTAGTGATCAGTGGTGAGAGACATTTTATGGTTTAGTGAA
GTAGGAGCTAGTTAATGGACAAAGAAGTGGTTTTGAAATTCCCTGTAATC
ACTTCCAATGAAATGTGACACGAACAAACAGCAAGTATTTTGAAGGCAAA
AGTGAGATACATATCCTCCCTGTATTGATAGGAGTCAGCTGACCTACTGG
AGTTGTTTGTTCTCTAACCTTCACTGGAGTCAGCAGCATGCAATGGTTCT
ATTAAGGTTGCAATGAATGCCCTGTTGCAAACCACTCAGTTGTTAAATTG
GGTGCGTTGACCACTCCTCTCTTGTTGTCCGGATCTTTAGTGTGATCTGA
TGCCCACTGTACAAGAATCAAGTATAAATTTGTTTTGGAAGTGTGTGGTA
GACTACTCTGGGCTATCTTGACAATATTCAGTGCTTTAGAGCCTTAGGAG
AAACTGAAGGGTTATGCAATGGTAAGCATGGGCGACCTCTACAACTTGTT
GGAATGTCGACAGATTACTTGAATAGAACATTTTCTGCACAAAGTTGTCC
CCAAAATGTCTTTGGAGGTGTAGTTAATATGTGCTAGGCAATTGTGGGGG
TTTCACCTTATTGGAATCACGATAGGATTTTGTGCTTGGAGTATGCACAA
CTGTAAACCGCAAATTGAGCATACTGCCTTTCTAATTAGCTCTCATACGC
TTTTTGCTAATTGTATGGTTAGGGCATTTACACCCTCTGAACTCCTAAAT
TTGTCCACCTTATTTTCACCTTCATTTTCATGAGCCTGCATTACGAGGAT
TTTTTATGAGGTGAGAAAAGCCTTGCAATTTGCGTCTCCTCTTCTCCCTG
TGGAAAATGATTTCAGTGTGGAAGGGTGCGTAGGTCTTTTTGAGGTGTTT
CCCACTTTGGGGGACTACTTCGTACTTCACCATAGTTGCTCATGTTCATC
TTCATCATATAACATGAAGTCAGATATACAGTGCAGCAATGGATGTGCAC
TGAAGCGCAAGGGTTGCTTATCAATATCGTGTCATGGTCACCATGCAAGT
GGCACGTACGAGCATAAATTGGTAGTGAATAACTGCAATGTGGTGTGATC
AGCTTGTAAGATACTATGTCTTGCACCATTTCTGGATAGTGCTACCATAC
TGTATTGCAGTGAGTATCTCAACATTGGCCATGGTTGCAGTCTTCTCGGA
CTCTGGTCAACCCTTTTATATTTACTCCTATGTTTGCCTTAGTATTAGGT
ATTGACTGATGGCCAAATTGATGTACAAAAGTGGTTACCTACTCACTACT
ACTTGGTACATAATCATTCACCACTCTGTTCAGTGACATTTCATCAGCCT
CCAACTATATTTGTATACATCAATTTCGTTGATCTCTTAACTTGGCAGGG
GAAGGTAGAGCCAATGCTCCACATCCACATCACACTCCACCAGGGCCTTC
ATGGGCCCCTAACAGGGACTGGGGCTATGGAGGCACCAGGGGCAGGGGCC
AGCATGACGCTTGAGGTGGACTTCAAGATTCCTGGGGGAGAAGACACCCA
TCACCTAAGCATACCATTAGGTGAGACTATCTTATGACTTGCTTGTATTG
TGCCAGGTGAATGTTTTAGAGTTTCCAGAGATTCGGTTCAATCTTGAACT
TGACTTTGCACTAGATTAGTGTGTCGCTGATTGATGACTATGGTTACCAT
TTCATCTTTGCCTGGAAGTATCATGAATGAAGCAAAAGAGTTTCTGGTCA
ATGCCTTCCAAATCTGACACACGTAAGTAAGAATGCACAATAAAGTTCTT
TTTCAATTGTATTTTTCTCTTGATAGGGTTGATTTGGCCTGGTTTTGTGG
TTCAAATTTAACATGTAACCGTCTGATTCTTTTTCAAAGAGGTGTCAGCA
GAGACTAGTTAATAGTCGAATAAATGCATTTCATGGACCTTTCAAAACAA
CTTCGAACTGTGCCAAATGTTTTGTTAGTAAAAAAATATTAAAAGGCTCA
TCTCTTGTCCGTTCAATTTTTTTTCAAACACGAATGCACAGGGTGTGCTC
CACCCTTACTTCCACCCTTTCACCTTTATAACTCTCATCTTCACTGTTGT
TGCCTGTCACTATGCCTTGTGCTGCTCATATTTATCTGTCTCAGCTGTTG
AAGTTGTACCAGATTCCATGCGCTTTGAAGAACTTCGACCAAGGGGTAGT
GGAGCTAGTGGAGAAGATTTGGAGGCAACTCAGGATGGTGCTGTCAAACT
TCGAAATATTGACACTGGAGAAGAGATTGCACTGGAAGAAATAGACAAGC
GTGTGCCCCCTGCAATGGATCCAAGTCAGCTGTTGAATTTTTGAATGGGA
GCCAAGTCATTTAGGAGACAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig116:4131..7851+

>mRNA_C-tenellus_contig116.1.3 ID=mRNA_C-tenellus_contig116.1.3|Name=mRNA_C-tenellus_contig116.1.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=630bp|location=Sequence derived from alignment at C-tenellus_contig116:4131..7851+ (Choristocarpus tenellus KU2346)
ATGAGTTTCCAACTTGTGCGTGTGCCCTCGTGCCGTTCTCTTCCACGTGC
TATTGTTCTTCAGTCACTTCAGCTGACTACATCATTAATATCGGAGTGCA
AGGCCTTGGCACTTGGGAGTCATTTGACACAGGCACCAGATGCCTATCAA
CTTCGAATAGCAGATGATGAGTGGGACCCAGACTTGGACTTTCCGGAGCT
GGATTCATCTGCAACTATAACGGATGTGGGAGTGGATCAATTTGTGCTCT
GCCCAAAGGGGAAGGTAGAGCCAATGCTCCACATCCACATCACACTCCAC
CAGGGCCTTCATGGGCCCCTAACAGGGACTGGGGCTATGGAGGCACCAGG
GGCAGGGGCCAGCATGACGCTTGAGGTGGACTTCAAGATTCCTGGGGGAG
AAGACACCCATCACCTAAGCATACCATTAGCTGTTGAAGTTGTACCAGAT
TCCATGCGCTTTGAAGAACTTCGACCAAGGGGTAGTGGAGCTAGTGGAGA
AGATTTGGAGGCAACTCAGGATGGTGCTGTCAAACTTCGAAATATTGACA
CTGGAGAAGAGATTGCACTGGAAGAAATAGACAAGCGTGTGCCCCCTGCA
ATGGATCCAAGTCAGCTGTTGAATTTTTGA
back to top