mRNA_C-tenellus_contig116.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig116.1.1
Unique NamemRNA_C-tenellus_contig116.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig116.1.1 vs. uniprot
Match: A0A6H5KNU9_9PHAE (CRIM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU9_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 1.660e-70
Identity = 128/225 (56.89%), Postives = 156/225 (69.33%), Query Frame = 2 
Query:  809 EGLTEDPHSHHGADGSSGGCTSLQLTTSLISECKALALGSHLTQAPDAYQLRIADDEWDPDLDFPELDSSATITDVGVDQFVLCPKGKVEPMLHIHITLHQGLHGPLTGTGAMEAPGAGASMTLEVDFKIPGGEDTHHLSIPLAVEVVP-DSMRFEELRPRGSGASGEDLEATQ------------------DGAVKLRNIDTGEEIALEEIDKRVPPAMDPSQL 1426
            E L  DP   HG D   GGCT+ QL  +L+SECK+  LGS LTQ  D Y LR+ADD+WDPDLDFP LDSSA ITDVGVDQFVLC + ++EPMLHI I LH+GL+GPLTGTGAMEAPGAGAS+TLEVDF+ PG E THH+S+P+A E    D +RF +   RGS AS +  E  +                  + AVK+RN+DTGE+I L EI  RVPP++DP ++
Sbjct:  246 ESLMGDPRVDHGTDHGPGGCTAEQLIRALVSECKSRDLGSELTQGADKYVLRMADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASITLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPGNKEQVVEEIGIEEAVKVRNMDTGEDITLAEIKDRVPPSLDPGEV 470
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BLAST of mRNA_C-tenellus_contig116.1.1 vs. uniprot
Match: D7FJ13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ13_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 1.170e-56
Identity = 102/173 (58.96%), Postives = 124/173 (71.68%), Query Frame = 2 
Query:  965 IADDEWDPDLDFPELDSSATITDVGVDQFVLCPKGKVEPMLHIHITLHQGLHGPLTGTGAMEAPGAGASMTLEVDFKIPGGEDTHHLSIPLAVEVVP-DSMRFEELRPRGSGASGEDLEATQ------------------DGAVKLRNIDTGEEIALEEIDKRVPPAMDPSQL 1426
            +ADD+WDPDLDFP LDSSA ITDVGVDQFVLC + ++EPMLHI I LH+GL+GPLTGTGAMEAPGAGASMTLEVDF+ PG E THH+S+P+A E    D +RF +   RGS AS +  E  +                  + AVKLRN+DTGE+I L EI  RVPP++DP ++
Sbjct:    1 MADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASMTLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPSNKEKVVGEIGMEEAVKLRNMDTGEDITLAEIKDRVPPSLDPGEV 173
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BLAST of mRNA_C-tenellus_contig116.1.1 vs. uniprot
Match: A0A835ZDT3_9STRA (CRIM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT3_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.050e-17
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 3 
Query:  393 MKKVSTGERVNFSDLRRSVGRIQHGDADSDLASEQMLVSELMNTTPSSSYEGDTWRDGYIYNGHDGSPPGSLDGRYDSDIEAADEVVSAA--EEVNPKADLIVKEDVPEI--KAESGQESLLSMGLAAVKISEEE 785
            MKK+STGERVN  D+RR + +++    D+ +A EQMLV ELM+TTPSSS+  D WRDGYIY   DG+  G+    Y SD + A+ VVS +   E     DL  K +V ++    +S   SLLS  LAAVK  E++
Sbjct:    1 MKKISTGERVNLQDIRRGIDQLRLSHTDAAIAGEQMLVEELMDTTPSSSFGEDAWRDGYIY---DGAAGGASPKDY-SDDDGAEAVVSGSYPPEGQESQDLFEKVEVAKLPDSQDSNPTSLLSGALAAVKSQEQQ 131
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig116.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KNU9_9PHAE1.660e-7056.89CRIM domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FJ13_ECTSI1.170e-5658.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZDT3_9STRA3.050e-1746.67CRIM domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig116contigC-tenellus_contig116:3002..7851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1465
Hectar predicted targeting categoryother localisation
Exons7
Cds size417
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig116.1.1prot_C-tenellus_contig116.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig116 3405..4137 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.5461972-UTR-C-tenellus_contig116:3001..31871680789185.5461972-UTR-C-tenellus_contig116:3001..3187Choristocarpus tenellus KU2346UTRC-tenellus_contig116 3002..3187 +
1680789185.5582182-UTR-C-tenellus_contig116:3198..34041680789185.5582182-UTR-C-tenellus_contig116:3198..3404Choristocarpus tenellus KU2346UTRC-tenellus_contig116 3199..3404 +
1680789185.5962558-UTR-C-tenellus_contig116:4137..41991680789185.5962558-UTR-C-tenellus_contig116:4137..4199Choristocarpus tenellus KU2346UTRC-tenellus_contig116 4138..4199 +
1680789185.604206-UTR-C-tenellus_contig116:4350..44191680789185.604206-UTR-C-tenellus_contig116:4350..4419Choristocarpus tenellus KU2346UTRC-tenellus_contig116 4351..4419 +
1680789185.612752-UTR-C-tenellus_contig116:4614..47401680789185.612752-UTR-C-tenellus_contig116:4614..4740Choristocarpus tenellus KU2346UTRC-tenellus_contig116 4615..4740 +
1680789185.620522-UTR-C-tenellus_contig116:6878..70501680789185.620522-UTR-C-tenellus_contig116:6878..7050Choristocarpus tenellus KU2346UTRC-tenellus_contig116 6879..7050 +
1680789185.6357915-UTR-C-tenellus_contig116:7624..78511680789185.6357915-UTR-C-tenellus_contig116:7624..7851Choristocarpus tenellus KU2346UTRC-tenellus_contig116 7625..7851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.5712347-CDS-C-tenellus_contig116:3404..37251680789185.5712347-CDS-C-tenellus_contig116:3404..3725Choristocarpus tenellus KU2346CDSC-tenellus_contig116 3405..3725 +
1680789185.5819108-CDS-C-tenellus_contig116:4041..41371680789185.5819108-CDS-C-tenellus_contig116:4041..4137Choristocarpus tenellus KU2346CDSC-tenellus_contig116 4042..4137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig116.1.1

>prot_C-tenellus_contig116.1.1 ID=prot_C-tenellus_contig116.1.1|Name=mRNA_C-tenellus_contig116.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=139bp
MKKVSTGERVNFSDLRRSVGRIQHGDADSDLASEQMLVSELMNTTPSSSY
EGDTWRDGYIYNGHDGSPPGSLDGRYDSDIEAADEVVSAAEEVNPKADLI
VKEDVPEIKAESGQESLLSMGLAAVKISEEEVVQGGGG*
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mRNA from alignment at C-tenellus_contig116:3002..7851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig116.1.1 ID=mRNA_C-tenellus_contig116.1.1|Name=mRNA_C-tenellus_contig116.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4850bp|location=Sequence derived from alignment at C-tenellus_contig116:3002..7851+ (Choristocarpus tenellus KU2346)
GTCATTGAGATGATTTTGTAGTAGGGAATTCTTGGACTTCATTCAACTAG
TCGATTATGACTTCCTGGTGCCAGACGTTGTTGGTTTTGGCATTTCCCAA
ACTAATCGCAAACCCAGAAGATCTATCCCGTAACGTTTCAATTCTTCTCG
TCAGTAATTGGAGAAGTTTAAGCACCTATTTTGGATGCTCATTTGAGGCC
TTCCAACTGAACTCTCCGTAGGTGGTGCTGACTTCACAAACGTATTCATT
AGTTAGGACTTCCTTCAACTTTCCCCTCCTTTATGAAGGTGCTTGAAGTT
CTTCCTTTCCTACTGTTCTATTTCAATATATTCAGAGGCGTTTGGGGAAT
TGGACAGGGAGGAGGACATTGTTGAGAGGGAAAGGAATAGGGTTGCAGTC
AACATGAAGAAGGTCAGCACGGGGGAGAGGGTAAACTTCTCCGATTTGCG
TCGAAGCGTCGGGCGAATACAGCACGGGGATGCAGACAGCGACCTGGCCA
GCGAGCAAATGCTCGTTTCTGAGTTGATGAATACAACGCCTTCATCTTCT
TATGAAGGTGATACATGGCGAGATGGGTATATCTACAACGGCCATGACGG
ATCGCCACCTGGGTCATTGGATGGACGGTACGACTCGGACATTGAAGCTG
CCGATGAGGTGGTTAGCGCTGCGGAGGAGGTCAATCCTAAAGCCGATCTA
ATCGTGAAGGAGGACGTGCCAGAGGTGAGGACGTTTTTCTAGTGCACCTC
GTCTTGAAAATTGAAGCGAAGAGATACCTTGAATCTCCTCAGGTCTATTA
ATATCGCATCAAGGTGTGTACAGACCCTTAGGTATCCCTCCCCAGTGCAA
CAACCTGTGGGATGGAGGCATTGCAGTCGAGATCGAATAGAGATTTATCT
TGAACTATCACAGAGCGAGCACGCTATGTCGAACTCTTTCAAACCTTGTC
TGATCTGTATCCGGGGGTATCCGGGAGTATACTCTGGTATTGAACACATA
CAAATACAGTGAGTAATGTAGGACCCCCTGCGCTGTGCAGATCAAGGCGG
AATCCGGACAGGAGTCGTTGCTTTCCATGGGTCTTGCTGCGGTCAAGATC
AGTGAAGAAGAAGTGGTTCAGGGGGGGGGGGGGTAGAAGGCTTAACTGAA
GACCCACACAGTCACCATGGGGCAGATGGAAGCTCCGGCGGGTGCACGGT
GAGATTTTGCCTTGAATACTATTGTTTATTAGACTGCAGTCTACACTGCC
TTGTACTTAAGTCGTGGGAGGTGATCACACAGGTCTATGAGTTTCCAACT
TGTGCGTGTGCCCTCGTGCCGTTCTCTTCCACGTGCTATTGTTCTTCAGT
CACTTCAGCTGACTACATCATTAATATCGGAGTGCAAGGCCTTGGCACTT
GGGAGTCATTTGACACAGGTGGGTTGTGCCTGACGTTGTAGATGAATGCT
TCTATTGCAACCTTCCTATGCATCATTACATATGCCGTTATCCAGGATAT
TACACTCCCCCCTGTCACATCCCGCCATCTATTTATGAGACTCGATTCTG
CTACTGGGTAACCTTGTTGTTCCGTGTTGATTTGTTGATGCTGTTGCTGT
GCTTGTGTCATAGGCACCAGATGCCTATCAACTTCGAATAGCAGATGATG
AGTGGGACCCAGACTTGGACTTTCCGGAGCTGGATTCATCTGCAACTATA
ACGGATGTGGGAGTGGATCAATTTGTGCTCTGCCCAAAGGTGCCTAGATG
TCCCCTCTGGATATTACACATTGCACTGATTCTGGATTGGTTTCTCTGAA
GAAGAGTGAGAACTGGATAATCATTGATGATGCAGCACTAACATGCATGA
TTAACTATTCCTCTTTTTTTTTTCTTATTTACTTAATTTTTTACTATGAA
ATCACTCCTTGAGATGTTCCTTTTTTCATTTCCTGAGGTTTTACTTTTTA
TTGCTTCATTGGGGAATTGGGCTACATTTCTTATGTTGCTACACTGTGGA
ATGCCATTGGGGACATGGATTGGAGATTGATTGTCATCAGGCTAAAGCCA
TTTCAAAACTGATAAGGAACCTTCGATAGTAAGGGCCAAGTACCTTTGTC
TTTTAAGTATCTTTGGTGGCAGCCTCCTTGTTATGCTGTGTATGAGCCTA
TTAATCTTGCGCTAACAATATGCTGCATGTAACCAGGTTGTATATATATA
TATATATATTTTATACCTATCTTCTCTTTACTTTTTTTTCTGTTACATCC
CGTATGACAAAAGTCCAACAATACTGTTCAAGATGCCTAGACAGAGGTAA
CTGTATTTTTCTGGATCAAGATAGTTCAACTGTCTAATGTGCTCATCAAA
AGCACTCAAGTTAAGTGTTTGAAATATCATCAAATGGTGTGGAACAAAGT
TTGATAGTTGGAGTATTTGCAAGATGAGGGGTGAGGAAAGGTACTTTTTC
GAGCTGATACTCTTCACCTAATTTTTGTGTTTTCCAAGTCTAGTGATCAG
TGGTGAGAGACATTTTATGGTTTAGTGAAGTAGGAGCTAGTTAATGGACA
AAGAAGTGGTTTTGAAATTCCCTGTAATCACTTCCAATGAAATGTGACAC
GAACAAACAGCAAGTATTTTGAAGGCAAAAGTGAGATACATATCCTCCCT
GTATTGATAGGAGTCAGCTGACCTACTGGAGTTGTTTGTTCTCTAACCTT
CACTGGAGTCAGCAGCATGCAATGGTTCTATTAAGGTTGCAATGAATGCC
CTGTTGCAAACCACTCAGTTGTTAAATTGGGTGCGTTGACCACTCCTCTC
TTGTTGTCCGGATCTTTAGTGTGATCTGATGCCCACTGTACAAGAATCAA
GTATAAATTTGTTTTGGAAGTGTGTGGTAGACTACTCTGGGCTATCTTGA
CAATATTCAGTGCTTTAGAGCCTTAGGAGAAACTGAAGGGTTATGCAATG
GTAAGCATGGGCGACCTCTACAACTTGTTGGAATGTCGACAGATTACTTG
AATAGAACATTTTCTGCACAAAGTTGTCCCCAAAATGTCTTTGGAGGTGT
AGTTAATATGTGCTAGGCAATTGTGGGGGTTTCACCTTATTGGAATCACG
ATAGGATTTTGTGCTTGGAGTATGCACAACTGTAAACCGCAAATTGAGCA
TACTGCCTTTCTAATTAGCTCTCATACGCTTTTTGCTAATTGTATGGTTA
GGGCATTTACACCCTCTGAACTCCTAAATTTGTCCACCTTATTTTCACCT
TCATTTTCATGAGCCTGCATTACGAGGATTTTTTATGAGGTGAGAAAAGC
CTTGCAATTTGCGTCTCCTCTTCTCCCTGTGGAAAATGATTTCAGTGTGG
AAGGGTGCGTAGGTCTTTTTGAGGTGTTTCCCACTTTGGGGGACTACTTC
GTACTTCACCATAGTTGCTCATGTTCATCTTCATCATATAACATGAAGTC
AGATATACAGTGCAGCAATGGATGTGCACTGAAGCGCAAGGGTTGCTTAT
CAATATCGTGTCATGGTCACCATGCAAGTGGCACGTACGAGCATAAATTG
GTAGTGAATAACTGCAATGTGGTGTGATCAGCTTGTAAGATACTATGTCT
TGCACCATTTCTGGATAGTGCTACCATACTGTATTGCAGTGAGTATCTCA
ACATTGGCCATGGTTGCAGTCTTCTCGGACTCTGGTCAACCCTTTTATAT
TTACTCCTATGTTTGCCTTAGTATTAGGTATTGACTGATGGCCAAATTGA
TGTACAAAAGTGGTTACCTACTCACTACTACTTGGTACATAATCATTCAC
CACTCTGTTCAGTGACATTTCATCAGCCTCCAACTATATTTGTATACATC
AATTTCGTTGATCTCTTAACTTGGCAGGGGAAGGTAGAGCCAATGCTCCA
CATCCACATCACACTCCACCAGGGCCTTCATGGGCCCCTAACAGGGACTG
GGGCTATGGAGGCACCAGGGGCAGGGGCCAGCATGACGCTTGAGGTGGAC
TTCAAGATTCCTGGGGGAGAAGACACCCATCACCTAAGCATACCATTAGG
TGAGACTATCTTATGACTTGCTTGTATTGTGCCAGGTGAATGTTTTAGAG
TTTCCAGAGATTCGGTTCAATCTTGAACTTGACTTTGCACTAGATTAGTG
TGTCGCTGATTGATGACTATGGTTACCATTTCATCTTTGCCTGGAAGTAT
CATGAATGAAGCAAAAGAGTTTCTGGTCAATGCCTTCCAAATCTGACACA
CGTAAGTAAGAATGCACAATAAAGTTCTTTTTCAATTGTATTTTTCTCTT
GATAGGGTTGATTTGGCCTGGTTTTGTGGTTCAAATTTAACATGTAACCG
TCTGATTCTTTTTCAAAGAGGTGTCAGCAGAGACTAGTTAATAGTCGAAT
AAATGCATTTCATGGACCTTTCAAAACAACTTCGAACTGTGCCAAATGTT
TTGTTAGTAAAAAAATATTAAAAGGCTCATCTCTTGTCCGTTCAATTTTT
TTTCAAACACGAATGCACAGGGTGTGCTCCACCCTTACTTCCACCCTTTC
ACCTTTATAACTCTCATCTTCACTGTTGTTGCCTGTCACTATGCCTTGTG
CTGCTCATATTTATCTGTCTCAGCTGTTGAAGTTGTACCAGATTCCATGC
GCTTTGAAGAACTTCGACCAAGGGGTAGTGGAGCTAGTGGAGAAGATTTG
GAGGCAACTCAGGATGGTGCTGTCAAACTTCGAAATATTGACACTGGAGA
AGAGATTGCACTGGAAGAAATAGACAAGCGTGTGCCCCCTGCAATGGATC
CAAGTCAGCTGTTGAATTTTTGAATGGGAGCCAAGTCATTTAGGAGACAG
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Coding sequence (CDS) from alignment at C-tenellus_contig116:3002..7851+

>mRNA_C-tenellus_contig116.1.1 ID=mRNA_C-tenellus_contig116.1.1|Name=mRNA_C-tenellus_contig116.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=417bp|location=Sequence derived from alignment at C-tenellus_contig116:3002..7851+ (Choristocarpus tenellus KU2346)
ATGAAGAAGGTCAGCACGGGGGAGAGGGTAAACTTCTCCGATTTGCGTCG
AAGCGTCGGGCGAATACAGCACGGGGATGCAGACAGCGACCTGGCCAGCG
AGCAAATGCTCGTTTCTGAGTTGATGAATACAACGCCTTCATCTTCTTAT
GAAGGTGATACATGGCGAGATGGGTATATCTACAACGGCCATGACGGATC
GCCACCTGGGTCATTGGATGGACGGTACGACTCGGACATTGAAGCTGCCG
ATGAGGTGGTTAGCGCTGCGGAGGAGGTCAATCCTAAAGCCGATCTAATC
GTGAAGGAGGACGTGCCAGAGATCAAGGCGGAATCCGGACAGGAGTCGTT
GCTTTCCATGGGTCTTGCTGCGGTCAAGATCAGTGAAGAAGAAGTGGTTC
AGGGGGGGGGGGGGTAG
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