mRNA_C-tenellus_contig11599.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11599.2.1
Unique NamemRNA_C-tenellus_contig11599.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11599.2.1 vs. uniprot
Match: A0A6H5K092_9PHAE (2OG-FeII_Oxy_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K092_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 7.490e-39
Identity = 147/494 (29.76%), Postives = 187/494 (37.85%), Query Frame = 2
Query:  269 QMEPPLSVCRRLFRRENEDHVVDVWKVLSEHHRSELRDHGFTIVDGMATPHVAGLAHDEA---LKRASVGKLAMAHPGGDVGVTKVV---------------------------------YEPSVRDDVTMFISPAQEKALLEAADGTDMDGVVIGVDTQVLAIHHILGLLRNLGDDLGRLVRLTGGVEYQLAVYPTGVGARYKRHRDAFPDDGWESNTTQDDDIFGEDGDQGKAISLEGVATEMCLDSETIEVGVEKRKLEAQVTGFRRVTAVLYLAREGE-WDEEDGGALRLYPPVKEEL--RERCSKG--GE--------------------------------QDEAGIVG---------VDD---------------------------------------------------------------------------------------FVDIMPIGGRAVLFLSGAVDHEVRPVTGNRERAALTAWYH 1243
            +MEPPLSVC+RL + +        W VLS+  R+ L   GFT++D +A   +A  A+DEA   + RA+ G LA AH     G   +                                  Y  SVRDD+T F+S  +E      A G    G          A+   L +L  LG+DLGR+VRL G VE+QLAVYP+G+GARY+RHRDA+PDDG E            D D+    + +G   E+  +  T     E    +     FRR+TA+ YL R G  W   DGGALRLYPP    L   E C  G  GE                                 D A   G         +DD                                                                                       FVD+ P+ GRAV+F SGAV+HEV PVTG   RAALT W+H
Sbjct:   88 KMEPPLSVCQRLLKDDGGGDGP--WLVLSDSQRASLSQRGFTVLDRLAPASLAADAYDEASFAIARAASGVLAPAHGSSGGGARSINGGCGHETSEGDGALNEEGLKDEHAPAAAPGLTGYVKSVRDDLTAFVSSEREAG--RGARGAAETG----------AVGRTLAILARLGEDLGRMVRLRGRVEHQLAVYPSGIGARYERHRDAYPDDGEE------------DYDEDPPAATDG---EVNANHNT--KAEEAEGADGGSVSFRRITAICYLRRNGTPWQASDGGALRLYPPTASPLAQEEECDNGSSGEVVCKLASRLDFEAEQEDRRQHQQQPDTRGPCSSDAAAATGGRDRVTGDDIDDGRAGGSSSCRXXXXXXXXXXXXXXXXXXXICHVSXXXXXXXXVATNTGESASSRDDWAXXXXXXXXXXXXXTNSGGDETGGEGTRQGFVDVPPLAGRAVVFFSGAVEHEVLPVTGQLPRAALTTWFH 550          
BLAST of mRNA_C-tenellus_contig11599.2.1 vs. uniprot
Match: D8LHC0_ECTSI (2OG-FeII_Oxy_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHC0_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 7.440e-28
Identity = 107/373 (28.69%), Postives = 136/373 (36.46%), Query Frame = 2
Query:  521 YEPSVRDDVTMFISPAQEKALLEAADGTDMDGVVIGVDTQVLAIHHILGLLRNLGDDLGRLVRLTGGVEYQLAVYPTGVGARYKRHRDAFPDDGWESNTTQDDDIFGEDGDQGKAISLEGVATEMCLDSETIEVGVEKRKLEAQVTGFRRVTAVLYLAREGE-WDEEDGGALRLYPPVKEEL----------------------------------------RERCS----------------------------------KGGEQDEAGIVGVDD---------------------------------------------------------FVDIMPIGGRAVLFLSGAVDHEVRPVTGNRERAALTAWYH 1243
            Y  SVRDD+T+F+S  +E                +G           L +L  LG+DLGR+VRL G VE+QLAVYP G+GARY+RHRDA+PDDG        +D + ED            AT+  +++       E    +     FRR+TA+ YL R G  W   DGGALRLYPP    L                                        R+RCS                                  + G   E G  G  D                                                         F+D+ P+ GRAV+F SGAV+HEV PVTG   RAALT W+H
Sbjct:  147 YVKSVRDDLTVFVSSEREAGAAAXXXXXXXXXXAVG---------RTLAILARLGEDLGRMVRLRGRVEHQLAVYPAGIGARYERHRDAYPDDG--------EDDYDED---------PPAATDGEVNANHNTEAEEGEGADGGSVSFRRITAICYLRRSGAPWQASDGGALRLYPPTASPLAQEKQRDNGNSGEVVWKLASWLDLAEEHEDRRQDQQQPTTRDRCSSDAAPAAGGRDAVVGDDIIDGRTGGSNSYRISSCRSGSGGEDGRTGGGDIGHGSGXXXXXXXXXXXXXXASSRDDWVGDGAQXXXXXXXXXXXXGNEAGGEGPRQGFIDVPPLAGRAVVFFSGAVEHEVLPVTGPLPRAALTTWFH 493          
BLAST of mRNA_C-tenellus_contig11599.2.1 vs. uniprot
Match: A0A7S1SWH8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SWH8_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 2.240e-13
Identity = 100/401 (24.94%), Postives = 136/401 (33.92%), Query Frame = 2
Query:  275 EPPLSVCRRLFRRENE---DHVVDVWKVLSEHHRSELRDHGFTIVDGMATPHVAGLAHDEALKRASVGKLAMAHPGGDVGVTKVVYEPSVRDDVTMFISPAQEKALLEAADGTDMDGVVIGVDTQVLAIHHILGLLRNLGDDLGRLVRLTGG-VEYQLAVYPTGVGARYKRHRDAFPDDGWESNTTQDDDIFGEDGDQGKAISLEGVATEMCLDSETIEVGVEKRKLEAQVTGFRRVTAVLYLAREGEWDEEDGGALRLYPPVK--------------EELR----ERCSKGGEQDEAGIV------------------------------GVDDF----------------------------VDIMPIGGRAVLFLSGAVDHEVRPVTGNRERAALTAW 1237
            E P  VC RLFR       D        L E H + L + GF +VDG  T  VA      A++ ++ G++    P  ++   +   + S R D+  F+   QE   +E                       +L  +  L +DL ++V L     EYQLA Y  G GA YKRHRDA P                                  C D+   +               RR+T V+Y      W+E  GGALRL+PP++               +LR       S  G      +V                               VD F                            +D+ P+ GR V+FLSG VDHEV P     +R ALTAW
Sbjct:   26 ENPFQVCSRLFRLSTSQPWDPSCAALTHLKEEHVAHLLERGFVVVDGFLTADVASELRSAAMEMSTSGEM---RPAAELDAGEHFSDRSARSDILRFVHLGQEGRAIEG----------------------VLKRMEELQEDLRQVVHLRRRQAEYQLAHYK-GNGAFYKRHRDALP----------------------------------CGDTNEDQ---------------RRMTIVVYT--NPSWEEAQGGALRLWPPIRPTAPPNNENGVVRIHDLRLANGGAASSNGGAPNGNVVDAPHRLAVVNSNGNGNGHHADHDTLSLDSHSVDSFCSHGRFPLNLCTALPHVKLSEDENGVGVMDVAPVAGRMVVFLSGCVDHEVLP--SYSDRIALTAW 347          
BLAST of mRNA_C-tenellus_contig11599.2.1 vs. uniprot
Match: A0A433P730_9FUNG (2OG-Fe(II) oxygenase superfamily-domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433P730_9FUNG)

HSP 1 Score: 77.0 bits (188), Expect = 7.400e-13
Identity = 75/238 (31.51%), Postives = 97/238 (40.76%), Query Frame = 2
Query:  530 SVRDDVTMFISPAQEKALLEAADGTDMDGVVIGVDTQVL-AIHHILGLLRNLGDDLGRLVRLTGGVEYQLAVYPTGVGARYKRHRDAFPDDGWESNTTQDDDIFGEDGDQGKAISLEGVATEMCLDSETIEVGVEKRKLEAQVTGFRRVTAVLYLAREGEWDEEDGGALRLYPPVKEELRERCSKGGEQDEAGIVGVDDFVDIMPIGGRAVLFLSGAVDHEVRPVTGNRERAALTAWY 1240
            + RDD+TM++ P Q                   V T  L A+ H L +   L  DL  L+ L    EYQLA YP   GARY+RHRDAFP D                                                +   T  RRVT+++YL     W   DGG LRL+           ++  E D     G D  VDI P+ GR V+FLSG VDH V  +   ++R A+TAW+
Sbjct:   20 TARDDLTMWLHPGQ-------------------VPTPGLSALAHFLSV--TLKSDLHYLLHLANETEYQLAYYPPN-GARYERHRDAFPTD------------------------------------------------DPADTQQRRVTSIVYL--NPGWINGDGGELRLF-----------ARPAEVD-----GSD--VDIEPVAGRLVVFLSGVVDHAV--IGSGKQRFAITAWH 165          
BLAST of mRNA_C-tenellus_contig11599.2.1 vs. uniprot
Match: A0A7S4Q1E2_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q1E2_9DINO)

HSP 1 Score: 73.2 bits (178), Expect = 5.060e-10
Identity = 51/127 (40.16%), Postives = 66/127 (51.97%), Query Frame = 2
Query:  878 GVATEMCLDSETI----EVGVEKRKLEAQVTG---FRRVTAVLYLAREGEWDEEDGGALRLYPPVKEELRERCSKGGEQDEAGIVGVDDFVDIMPIGGRAVLFLSGAVDHEVRPVTGNRERAALTAW 1237
            GV + M LD+  +    E GV  R+      G    R +T + YL  +  WDEE  GALRLY  +  E      K    +EA   G+ DF+D++P+ GR VLFLS  V HEVRP    R R A+T W
Sbjct:  370 GVLSTMRLDASVMVSAYEAGVSYRRHMDSYGGDDNHRMLTVLAYL-NDYSWDEESAGALRLYKDLAPE-----GKVVSAEEADAGGLGDFLDVLPLAGRVVLFLSRRVWHEVRPA--ERNRYAMTLW 488          
BLAST of mRNA_C-tenellus_contig11599.2.1 vs. uniprot
Match: A0A830HZU8_9CHLO (P4Hc domain-containing protein n=3 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HZU8_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 6.370e-10
Identity = 66/194 (34.02%), Postives = 77/194 (39.69%), Query Frame = 2
Query:  671 LRNLGDDLGRLV--RLTGGVEYQLAVYPTGVGARYKRHRDAFPDDGWESNTTQDDDIFGEDGDQGKAISLEGVATEMCLDSETIEVGVEKRKLEAQVTGFRRVTAVLYLAREGEWDEEDGGALRLYPPVKEELRERCSKGGEQDEAGIVGVDDFVDIMPIGGRAVLFLSGAVDHEVRPVTGNRE-RAALTAWYH 1243
            L  LGDD+ R    RL GG E QLAVY T    RY RHRDA P               G D                                    T  RR+T VLYL+     D +DGGALRLY P                       + + D++P  G AV+FLSGA+DHEV  +      RAALT W H
Sbjct:  155 LHRLGDDIARDAGARLRGGREVQLAVYRTS--GRYARHRDALP--------------LGADDXXXXXXXX-----------------XXXXXXXXXXTQRRRLTIVLYLSSASP-DGKDGGALRLYRPSP--------------------ANGYEDVIPSAGCAVVFLSGAIDHEVLSLEDTGYVRAALTLWMH 294          
BLAST of mRNA_C-tenellus_contig11599.2.1 vs. uniprot
Match: UPI000E0B8E66 (2OG-Fe(II) oxygenase n=1 Tax=Pleomorphovibrio marinus TaxID=2164132 RepID=UPI000E0B8E66)

HSP 1 Score: 68.2 bits (165), Expect = 1.920e-9
Identity = 41/97 (42.27%), Postives = 53/97 (54.64%), Query Frame = 2
Query:  950 QVTGFRRVTAVLYLAREGEWDEEDGGALRLYPPVKEELRERCSKGGEQDEAGIVGVDDFVDIMPIGGRAVLFLSGAVDHEVRPVTGNRERAALTAWY 1240
            Q   +R VT +LYL     W EEDGGALR+Y P               DE GI   +  +DI P+GGR V FLSG + HEV  +T  +ER ++T W+
Sbjct:  127 QSVAYRMVTVILYLNHG--WKEEDGGALRIYFP---------------DENGI---EKGLDIYPVGGRLVCFLSGEIPHEV--MTTKKERISITGWF 201          
BLAST of mRNA_C-tenellus_contig11599.2.1 vs. uniprot
Match: UPI0010CA953F (2OG-Fe(II) oxygenase n=1 Tax=Echinicola rosea TaxID=1807691 RepID=UPI0010CA953F)

HSP 1 Score: 67.8 bits (164), Expect = 2.460e-9
Identity = 41/93 (44.09%), Postives = 51/93 (54.84%), Query Frame = 2
Query:  962 FRRVTAVLYLAREGEWDEEDGGALRLYPPVKEELRERCSKGGEQDEAGIVGVDDFVDIMPIGGRAVLFLSGAVDHEVRPVTGNRERAALTAWY 1240
            +R VTA+LYL  E  WDE DGGA+R+Y P            GE  E      +   DI P GGR V+FLSG + HEV P    RER ++T W+
Sbjct:  127 YRVVTAILYLNEE--WDEGDGGAVRMYFP------------GENGE------ESNTDIYPKGGRLVVFLSGEIPHEVLPT--RRERISITGWF 197          
BLAST of mRNA_C-tenellus_contig11599.2.1 vs. uniprot
Match: A3I1A9_9BACT (Oxidoreductase, 2OG-Fe(II) oxygenase family n=1 Tax=Algoriphagus machipongonensis TaxID=388413 RepID=A3I1A9_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 8.450e-9
Identity = 36/92 (39.13%), Postives = 49/92 (53.26%), Query Frame = 2
Query:  962 FRRVTAVLYLAREGEWDEEDGGALRLYPPVKEELRERCSKGGEQDEAGIVGVDDFVDIMPIGGRAVLFLSGAVDHEVRPVTGNRERAALTAW 1237
            +R+VT ++YL     W EED G LR+Y P                     G ++ +DI PIGGR V+FLSG + HEV P   N+ER ++T W
Sbjct:  129 YRQVTVIIYL--NDSWSEEDAGMLRMYLPQAN------------------GSEEILDISPIGGRLVVFLSGEIPHEVLPT--NKERISITGW 198          
BLAST of mRNA_C-tenellus_contig11599.2.1 vs. uniprot
Match: A0A2Z4IHC5_9BACT (2OG-Fe(II) oxygenase n=1 Tax=Echinicola strongylocentroti TaxID=1795355 RepID=A0A2Z4IHC5_9BACT)

HSP 1 Score: 65.1 bits (157), Expect = 2.060e-8
Identity = 36/92 (39.13%), Postives = 49/92 (53.26%), Query Frame = 2
Query:  962 FRRVTAVLYLAREGEWDEEDGGALRLYPPVKEELRERCSKGGEQDEAGIVGVDDFVDIMPIGGRAVLFLSGAVDHEVRPVTGNRERAALTAW 1237
            +R VT +LYL     W  EDGGALR+Y P   E+ E+                  +D+ P+GGR V+FLSG + HEV P    +ER ++T W
Sbjct:  127 YRVVTTILYL--NDTWTREDGGALRMYLPGSGEVEEK------------------MDVFPVGGRMVVFLSGEIPHEVLPT--KKERISITGW 196          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11599.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K092_9PHAE7.490e-3929.762OG-FeII_Oxy_3 domain-containing protein n=1 Tax=E... [more]
D8LHC0_ECTSI7.440e-2828.692OG-FeII_Oxy_3 domain-containing protein n=1 Tax=E... [more]
A0A7S1SWH8_9CHLO2.240e-1324.94Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A433P730_9FUNG7.400e-1331.512OG-Fe(II) oxygenase superfamily-domain-containing... [more]
A0A7S4Q1E2_9DINO5.060e-1040.16Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A830HZU8_9CHLO6.370e-1034.02P4Hc domain-containing protein n=3 Tax=Pycnococcus... [more]
UPI000E0B8E661.920e-942.272OG-Fe(II) oxygenase n=1 Tax=Pleomorphovibrio mari... [more]
UPI0010CA953F2.460e-944.092OG-Fe(II) oxygenase n=1 Tax=Echinicola rosea TaxI... [more]
A3I1A9_9BACT8.450e-939.13Oxidoreductase, 2OG-Fe(II) oxygenase family n=1 Ta... [more]
A0A2Z4IHC5_9BACT2.060e-839.132OG-Fe(II) oxygenase n=1 Tax=Echinicola strongyloc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11599contigC-tenellus_contig11599:986..2851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog72019.SARC_09383T0
Preferred nameEGLN1
PFAMs2OG-FeII_Oxy_3,zf-MYND
Model size1674
Max annot lvl33154|Opisthokonta
KEGG koko:K09592
KEGG Pathwayko04066,ko05200,ko05211,map04066,map05200,map05211
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000302,GO:0001558,GO:0001666,GO:0001701,GO:0001890,GO:0001892,GO:0003006,GO:0003007,GO:0003205,GO:0003206,GO:0003231,GO:0003279,GO:0003281,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006082,GO:0006355,GO:0006357,GO:0006464,GO:0006520,GO:0006575,GO:0006611,GO:0006807,GO:0006810,GO:0006873,GO:0006875,GO:0006879,GO:0006886,GO:0006913,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0007507,GO:0007517,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008198,GO:0008270,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0014070,GO:0014706,GO:0015031,GO:0015833,GO:0016491,GO:0016705,GO:0016706,GO:0018126,GO:0018193,GO:0018208,GO:0018401,GO:0019219,GO:0019222,GO:0019471,GO:0019511,GO:0019538,GO:0019725,GO:0019752,GO:0019825,GO:0019826,GO:0019899,GO:0022414,GO:0022603,GO:0023051,GO:0023052,GO:0023057,GO:0030003,GO:0030307,GO:0030425,GO:0030518,GO:0030520,GO:0030522,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031543,GO:0031545,GO:0031974,GO:0031981,GO:0032364,GO:0032501,GO:0032502,GO:0032870,GO:0032879,GO:0032880,GO:0033036,GO:0033483,GO:0033554,GO:0033993,GO:0034613,GO:0036094,GO:0036211,GO:0036293,GO:0036294,GO:0036477,GO:0040008,GO:0042176,GO:0042221,GO:0042493,GO:0042592,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043009,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043401,GO:0043412,GO:0043433,GO:0043436,GO:0043523,GO:0043618,GO:0043620,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045184,GO:0045454,GO:0045732,GO:0045765,GO:0045893,GO:0045927,GO:0045935,GO:0045944,GO:0046872,GO:0046907,GO:0046914,GO:0046916,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048568,GO:0048583,GO:0048585,GO:0048608,GO:0048644,GO:0048646,GO:0048729,GO:0048731,GO:0048738,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050848,GO:0050849,GO:0050896,GO:0051090,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051213,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051336,GO:0051342,GO:0051344,GO:0051346,GO:0051641,GO:0051649,GO:0051716,GO:0055008,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0060255,GO:0060343,GO:0060347,GO:0060411,GO:0060412,GO:0060415,GO:0060537,GO:0060711,GO:0061061,GO:0061383,GO:0061384,GO:0061418,GO:0061458,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070727,GO:0070887,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071453,GO:0071456,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071731,GO:0072359,GO:0080090,GO:0097366,GO:0097447,GO:0097458,GO:0098771,GO:0120025,GO:0120038,GO:0140096,GO:1901214,GO:1901216,GO:1901342,GO:1901564,GO:1901605,GO:1901698,GO:1901700,GO:1902531,GO:1902532,GO:1902680,GO:1903506,GO:1903508,GO:1905289,GO:1905290,GO:2000026,GO:2000112,GO:2001141
Exons2
Evalue2.63e-19
EggNOG OGsKOG3710@1|root,KOG3710@2759|Eukaryota,38C21@33154|Opisthokonta
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001320.1
EC1.14.11.29
DescriptionEgl nine homolog
Cds size975
COG categoryT
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.3794286-UTR-C-tenellus_contig11599:985..14131680789185.3794286-UTR-C-tenellus_contig11599:985..1413Choristocarpus tenellus KU2346UTRC-tenellus_contig11599 986..1413 -
1680789185.424454-UTR-C-tenellus_contig11599:2580..28511680789185.424454-UTR-C-tenellus_contig11599:2580..2851Choristocarpus tenellus KU2346UTRC-tenellus_contig11599 2581..2851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.39575-CDS-C-tenellus_contig11599:1413..19261680789185.39575-CDS-C-tenellus_contig11599:1413..1926Choristocarpus tenellus KU2346CDSC-tenellus_contig11599 1414..1926 -
1680789185.4063158-CDS-C-tenellus_contig11599:2118..25801680789185.4063158-CDS-C-tenellus_contig11599:2118..2580Choristocarpus tenellus KU2346CDSC-tenellus_contig11599 2119..2580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11599.2.1prot_C-tenellus_contig11599.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11599 1414..2580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11599.2.1

>prot_C-tenellus_contig11599.2.1 ID=prot_C-tenellus_contig11599.2.1|Name=mRNA_C-tenellus_contig11599.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=325bp
MEPPLSVCRRLFRRENEDHVVDVWKVLSEHHRSELRDHGFTIVDGMATPH
VAGLAHDEALKRASVGKLAMAHPGGDVGVTKVVYEPSVRDDVTMFISPAQ
EKALLEAADGTDMDGVVIGVDTQVLAIHHILGLLRNLGDDLGRLVRLTGG
VEYQLAVYPTGVGARYKRHRDAFPDDGWESNTTQDDDIFGEDGDQGKAIS
LEGVATEMCLDSETIEVGVEKRKLEAQVTGFRRVTAVLYLAREGEWDEED
GGALRLYPPVKEELRERCSKGGEQDEAGIVGVDDFVDIMPIGGRAVLFLS
GAVDHEVRPVTGNRERAALTAWYH*
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mRNA from alignment at C-tenellus_contig11599:986..2851-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11599.2.1 ID=mRNA_C-tenellus_contig11599.2.1|Name=mRNA_C-tenellus_contig11599.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1866bp|location=Sequence derived from alignment at C-tenellus_contig11599:986..2851- (Choristocarpus tenellus KU2346)
AACGGTGGCGAGGTGGAGGAGGGGGAAGAAGAGGAGGAGGAAATCATAAT TGATGAGGAGGAAATGTTGAAGTTGTTGGACAAGGTAGTTTGATTTGTAC TACTCTCTTGAAGTCTGGTCTTCTCGGTATCGCCAGTGACATCAACTTCC TCTCAACCCTACCTAACATTTTTCCATGCGTCTACACACGAAGGAGTGCT TCCCCACTAACTGATGTACTGCTTATTCCATCTCGGTGATCCCTTGCCCC ACATACGCCTTTTACTTACAGATGGAACCGCCTTTGTCGGTTTGCCGGAG ACTTTTCAGACGCGAGAATGAAGATCATGTGGTTGATGTGTGGAAGGTGC TCTCCGAACACCACAGGTCTGAGCTGCGTGACCACGGCTTCACGATTGTG GACGGGATGGCCACCCCACATGTGGCGGGGTTAGCTCATGACGAGGCCTT AAAGAGGGCATCTGTGGGAAAGCTGGCTATGGCTCACCCTGGGGGCGATG TCGGAGTGACTAAAGTAGTGTACGAGCCGTCAGTTAGAGACGATGTGACG ATGTTTATCTCCCCAGCACAGGAAAAAGCCCTTCTGGAGGCTGCGGATGG TACTGACATGGATGGTGTGGTGATAGGAGTAGACACTCAGGTATTGGCTA TACATCACATACTCGGACTGCTGAGGAACCTTGGGGACGATTTGGGGAGG TTGGTGAGACTCACAGGGGGAGTGGAGTACCAGGTACGATGTGTGAGGTC GACTTCCTGTTTTGCATTCCAACCGCTTTTCTCTACCTACTTCCCCCTTG AGTTCCAATGCAATACAGCCACTCGGGAGCCTTTTGTCCTTCCCTTCCAC CTCTGGTAACGGCAACACTGTCCCTCCTTTCCATTTCATTGTGCCACCTT CCGTCGACACCTGTTGACTATCCAGTTGGCAGTGTACCCTACAGGGGTTG GAGCTAGATACAAGCGCCACAGAGATGCCTTTCCGGATGACGGTTGGGAA TCGAATACTACTCAGGATGATGATATTTTTGGTGAAGATGGGGATCAGGG CAAGGCAATCTCGTTAGAGGGCGTGGCAACAGAAATGTGCTTAGATAGTG AAACAATAGAAGTAGGGGTAGAGAAGAGAAAATTGGAAGCCCAGGTAACT GGTTTCCGTCGTGTAACTGCCGTTTTGTACCTTGCTCGAGAGGGAGAATG GGATGAGGAGGATGGAGGAGCCTTGCGATTATACCCTCCAGTAAAGGAAG AGCTCAGGGAAAGGTGTTCAAAAGGAGGAGAACAGGACGAAGCTGGGATA GTGGGTGTGGACGATTTTGTGGACATAATGCCGATTGGAGGACGGGCTGT GTTGTTCCTCAGTGGGGCTGTAGACCACGAGGTCAGACCTGTTACTGGCA ATAGAGAAAGGGCAGCTCTCACCGCATGGTACCACTGATTGAGACCCGTC TTTGCTCATTTTTTTGCCTCCTTCCTTACATGAGGTGTATCTCAAGCTGC TCCGTACTGTCTCTTGTGTTTTAGTCTATTACACCTACTGTGTTTATGAA CCATGTCTGGTGGTTGTATTACATACCCAAGGTTGACTACTTCCTCCATA GAAGTCAGGTTTGTCATCATCACATGATCAACATTCTCCTGGTTGTGTAT GTAAATGCTTTGGACACGAGAGCAATTTCGTTGTTGACCTCAGCGTCCCA AAACACATGATAGGGGGGCATGGAAGGAAAGGAATCAGCATTTGTGCAGA TCAAATATACATCATGTGGTATTGTTGGATCATCCAGTGATTCTTGTGGA ACATGTATATCGTGTATTCTGAGAGATACTAAAGCCCATTCAAGCCCCCC CCCATCATCTCCTTCC
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Coding sequence (CDS) from alignment at C-tenellus_contig11599:986..2851-

>mRNA_C-tenellus_contig11599.2.1 ID=mRNA_C-tenellus_contig11599.2.1|Name=mRNA_C-tenellus_contig11599.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=975bp|location=Sequence derived from alignment at C-tenellus_contig11599:986..2851- (Choristocarpus tenellus KU2346)
ATGGAACCGCCTTTGTCGGTTTGCCGGAGACTTTTCAGACGCGAGAATGA
AGATCATGTGGTTGATGTGTGGAAGGTGCTCTCCGAACACCACAGGTCTG
AGCTGCGTGACCACGGCTTCACGATTGTGGACGGGATGGCCACCCCACAT
GTGGCGGGGTTAGCTCATGACGAGGCCTTAAAGAGGGCATCTGTGGGAAA
GCTGGCTATGGCTCACCCTGGGGGCGATGTCGGAGTGACTAAAGTAGTGT
ACGAGCCGTCAGTTAGAGACGATGTGACGATGTTTATCTCCCCAGCACAG
GAAAAAGCCCTTCTGGAGGCTGCGGATGGTACTGACATGGATGGTGTGGT
GATAGGAGTAGACACTCAGGTATTGGCTATACATCACATACTCGGACTGC
TGAGGAACCTTGGGGACGATTTGGGGAGGTTGGTGAGACTCACAGGGGGA
GTGGAGTACCAGTTGGCAGTGTACCCTACAGGGGTTGGAGCTAGATACAA
GCGCCACAGAGATGCCTTTCCGGATGACGGTTGGGAATCGAATACTACTC
AGGATGATGATATTTTTGGTGAAGATGGGGATCAGGGCAAGGCAATCTCG
TTAGAGGGCGTGGCAACAGAAATGTGCTTAGATAGTGAAACAATAGAAGT
AGGGGTAGAGAAGAGAAAATTGGAAGCCCAGGTAACTGGTTTCCGTCGTG
TAACTGCCGTTTTGTACCTTGCTCGAGAGGGAGAATGGGATGAGGAGGAT
GGAGGAGCCTTGCGATTATACCCTCCAGTAAAGGAAGAGCTCAGGGAAAG
GTGTTCAAAAGGAGGAGAACAGGACGAAGCTGGGATAGTGGGTGTGGACG
ATTTTGTGGACATAATGCCGATTGGAGGACGGGCTGTGTTGTTCCTCAGT
GGGGCTGTAGACCACGAGGTCAGACCTGTTACTGGCAATAGAGAAAGGGC
AGCTCTCACCGCATGGTACCACTGA
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