mRNA_C-tenellus_contig11598.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11598.3.1
Unique NamemRNA_C-tenellus_contig11598.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11598.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11598contigC-tenellus_contig11598:3794..4278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size485
Hectar predicted targeting categorysignal peptide
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.310158-UTR-C-tenellus_contig11598:3793..39051680789185.310158-UTR-C-tenellus_contig11598:3793..3905Choristocarpus tenellus KU2346UTRC-tenellus_contig11598 3794..3905 -
1680789185.331065-UTR-C-tenellus_contig11598:4226..42781680789185.331065-UTR-C-tenellus_contig11598:4226..4278Choristocarpus tenellus KU2346UTRC-tenellus_contig11598 4227..4278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.32111-CDS-C-tenellus_contig11598:3905..42261680789185.32111-CDS-C-tenellus_contig11598:3905..4226Choristocarpus tenellus KU2346CDSC-tenellus_contig11598 3906..4226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11598.3.1prot_C-tenellus_contig11598.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11598 3906..4226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11598.3.1

>prot_C-tenellus_contig11598.3.1 ID=prot_C-tenellus_contig11598.3.1|Name=mRNA_C-tenellus_contig11598.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=107bp
MFIHHAALLTNQLSLWVLPPSGCTVKVWNTYGIPALSGMMMCYVMIASAT
IAPRWLCVMKRSCTVCGLISLPIIFTSEVTGSIPSTEVMTPLHGRKGLMV
SHLCGA*
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mRNA from alignment at C-tenellus_contig11598:3794..4278-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11598.3.1 ID=mRNA_C-tenellus_contig11598.3.1|Name=mRNA_C-tenellus_contig11598.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=485bp|location=Sequence derived from alignment at C-tenellus_contig11598:3794..4278- (Choristocarpus tenellus KU2346)
GACACTGAACACTGTGTATTTTTGTCCAATTGAGTGGGGGGCCTGCTGTT
GTATGTTTATTCACCATGCGGCCCTCCTCACAAACCAACTTAGTCTCTGG
GTGTTGCCACCATCTGGTTGCACGGTAAAAGTATGGAATACTTACGGAAT
ACCGGCCCTGAGTGGCATGATGATGTGTTACGTGATGATAGCTAGTGCAA
CCATCGCACCGCGATGGTTGTGTGTTATGAAAAGGTCTTGCACAGTGTGT
GGATTAATAAGCCTCCCCATAATTTTCACGTCGGAAGTAACTGGCTCTAT
TCCGTCGACCGAAGTAATGACACCATTGCACGGACGGAAAGGGTTAATGG
TATCACACTTATGTGGAGCTTAGCAATGTGTTAAGTGTTCCTTACGTAGT
TTATACAGCTCTTTTTATTTATTTTTCCAGTCTGTAATTAATTGTCCATG
CCATACCGAACCAGTGCTGAAAGAAGTGAAGAGCC
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Coding sequence (CDS) from alignment at C-tenellus_contig11598:3794..4278-

>mRNA_C-tenellus_contig11598.3.1 ID=mRNA_C-tenellus_contig11598.3.1|Name=mRNA_C-tenellus_contig11598.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=321bp|location=Sequence derived from alignment at C-tenellus_contig11598:3794..4278- (Choristocarpus tenellus KU2346)
ATGTTTATTCACCATGCGGCCCTCCTCACAAACCAACTTAGTCTCTGGGT
GTTGCCACCATCTGGTTGCACGGTAAAAGTATGGAATACTTACGGAATAC
CGGCCCTGAGTGGCATGATGATGTGTTACGTGATGATAGCTAGTGCAACC
ATCGCACCGCGATGGTTGTGTGTTATGAAAAGGTCTTGCACAGTGTGTGG
ATTAATAAGCCTCCCCATAATTTTCACGTCGGAAGTAACTGGCTCTATTC
CGTCGACCGAAGTAATGACACCATTGCACGGACGGAAAGGGTTAATGGTA
TCACACTTATGTGGAGCTTAG
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