mRNA_C-tenellus_contig11594.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11594.1.1
Unique NamemRNA_C-tenellus_contig11594.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11594.1.1 vs. uniprot
Match: D7FLL8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL8_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 1.160e-59
Identity = 100/141 (70.92%), Postives = 123/141 (87.23%), Query Frame = 1
Query:   10 LMSTFLPVGYPHSVSPEYLRFQGWNIAQDLTTYLRGVLATQAVLEGMGVGRAGSTSLAATIQWLARDGSSMVGSLLFTSLASGDFGVNLKSWRLFADVANDVGMTLELLAP--AVGGGSRFLELVCLASVFKASCGVAAGA 426
            LM+TFLP GYP SV PEY+R++ W+I QDL+++LRGVLATQAVLEGMGVGRAGST LAAT+QW+ARDG+SM+G LLFTS+AS +FGVN+K+WRLFAD +ND+G+ LE+LAP  A   G RFL L+C+ASVFKA+CGVA GA
Sbjct:  200 LMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGA 340          
BLAST of mRNA_C-tenellus_contig11594.1.1 vs. uniprot
Match: I2CPN2_NANGC (Uncharacterized protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPN2_NANGC)

HSP 1 Score: 180 bits (456), Expect = 5.200e-54
Identity = 89/142 (62.68%), Postives = 112/142 (78.87%), Query Frame = 1
Query:    1 KMALMSTFLPVGYPHSVSPEYLRFQGWNIAQDLTTYLRGVLATQAVLEGMGVGRAGSTSLAATIQWLARDGSSMVGSLLFTSLASGDFGVNLKSWRLFADVANDVGMTLELLAPAVGGGSRFLELVCLASVFKASCGVAAGA 426
            K  L + FLPVG+P SV+PEYLR+Q WN+ QDL+TYLRG+LATQA+LEG+GVGR G+T LAAT+QW+ RDG+SM+  L+FTS  S +FGVN KSWRLFAD   D+G+TL++LAP       FL  +CLASV K+ CG+AAGA
Sbjct:  138 KTLLHTVFLPVGFPSSVAPEYLRYQQWNVVQDLSTYLRGILATQAILEGVGVGREGATPLAATLQWITRDGASMMSGLVFTSFLSTNFGVNAKSWRLFADFMVDIGITLDMLAPLFP--KNFLLCICLASVCKSLCGIAAGA 277          
BLAST of mRNA_C-tenellus_contig11594.1.1 vs. uniprot
Match: L1IND8_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IND8_GUITC)

HSP 1 Score: 174 bits (442), Expect = 2.890e-51
Identity = 86/142 (60.56%), Postives = 113/142 (79.58%), Query Frame = 1
Query:    1 KMALMSTFLPVGYPHSVSPEYLRFQGWNIAQDLTTYLRGVLATQAVLEGMGVGRAGSTSLAATIQWLARDGSSMVGSLLFTSLASGDFGVNLKSWRLFADVANDVGMTLELLAPAVGGGSRFLELVCLASVFKASCGVAAGA 426
            K  + +TFLP GYP S+  EY ++Q +N+ QDL++ LRG+L+TQ +LEGMGVG+AG TSLAAT+QW+ARDGSSM+G LLFT+ AS  FG+++K WRLFAD+ NDV + L++LAPA      FL ++CL+SVFKA CGVAAGA
Sbjct:  123 KRIMYATFLPSGYPASLPDEYTKYQAFNLLQDLSSNLRGILSTQKILEGMGVGKAGVTSLAATMQWMARDGSSMLGGLLFTAFASSSFGIDIKRWRLFADLINDVALLLDMLAPAYP--DLFLPIICLSSVFKAMCGVAAGA 262          
BLAST of mRNA_C-tenellus_contig11594.1.1 vs. uniprot
Match: W7U3D2_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3D2_9STRA)

HSP 1 Score: 180 bits (456), Expect = 2.910e-51
Identity = 89/142 (62.68%), Postives = 112/142 (78.87%), Query Frame = 1
Query:    1 KMALMSTFLPVGYPHSVSPEYLRFQGWNIAQDLTTYLRGVLATQAVLEGMGVGRAGSTSLAATIQWLARDGSSMVGSLLFTSLASGDFGVNLKSWRLFADVANDVGMTLELLAPAVGGGSRFLELVCLASVFKASCGVAAGA 426
            K  L + FLPVG+P SV+PEYLR+Q WN+ QDL+TYLRG+LATQA+LEG+GVGR G+T LAAT+QW+ RDG+SM+  L+FTS  S +FGVN KSWRLFAD   D+G+TL++LAP       FL  +CLASV K+ CG+AAGA
Sbjct:  133 KTLLHTVFLPVGFPSSVAPEYLRYQQWNVVQDLSTYLRGILATQAILEGVGVGREGATPLAATLQWITRDGASMMSGLVFTSFLSTNFGVNAKSWRLFADFMVDIGITLDMLAPLFP--KNFLLCICLASVCKSLCGIAAGA 272          
BLAST of mRNA_C-tenellus_contig11594.1.1 vs. uniprot
Match: A0A7S0EV14_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EV14_9CRYP)

HSP 1 Score: 175 bits (444), Expect = 2.390e-50
Identity = 86/142 (60.56%), Postives = 113/142 (79.58%), Query Frame = 1
Query:    1 KMALMSTFLPVGYPHSVSPEYLRFQGWNIAQDLTTYLRGVLATQAVLEGMGVGRAGSTSLAATIQWLARDGSSMVGSLLFTSLASGDFGVNLKSWRLFADVANDVGMTLELLAPAVGGGSRFLELVCLASVFKASCGVAAGA 426
            K  + +TFLP GYP S+  EY ++Q +N+ QDLT+ LRG+L+TQ +LEGMGVG+AG TSLAAT+QW+ARDGSSM+G LLFT+ AS  FG+++K WRLFAD+ NDV + L++LAPA      FL ++CL+SVFKA CGV+AGA
Sbjct:   59 KRIMYATFLPSGYPASLPDEYTKYQAYNLLQDLTSNLRGILSTQKILEGMGVGKAGVTSLAATMQWMARDGSSMLGGLLFTAFASSSFGIHIKRWRLFADLINDVALLLDMLAPAYP--ELFLPIICLSSVFKAMCGVSAGA 198          
BLAST of mRNA_C-tenellus_contig11594.1.1 vs. uniprot
Match: A0A813KE75_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KE75_POLGL)

HSP 1 Score: 170 bits (431), Expect = 2.820e-48
Identity = 86/142 (60.56%), Postives = 109/142 (76.76%), Query Frame = 1
Query:    1 KMALMSTFLPVGYPHSVSPEYLRFQGWNIAQDLTTYLRGVLATQAVLEGMGVGRAGSTSLAATIQWLARDGSSMVGSLLFTSLASGDFGVNLKSWRLFADVANDVGMTLELLAPAVGGGSRFLELVCLASVFKASCGVAAGA 426
            K +L   FLPVGYPHSVS EY  +Q W+  Q + +YLRGVLATQA+L G+GVG+ G+T+LAATI W+ +DGS MVG L F +  S  F VN+K+WRLFADVAN+VG+TL+LLAP  G    FL ++C+A+VFKA CGV+AGA
Sbjct:   74 KASLAGAFLPVGYPHSVSKEYFSYQAWDTVQAMCSYLRGVLATQALLRGVGVGKEGATALAATIIWVLKDGSGMVGGLGFATFCSVGFDVNVKTWRLFADVANNVGLTLDLLAPMAG--DYFLLVICVANVFKAMCGVSAGA 213          
BLAST of mRNA_C-tenellus_contig11594.1.1 vs. uniprot
Match: A0A813HLD8_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HLD8_POLGL)

HSP 1 Score: 170 bits (431), Expect = 1.700e-46
Identity = 86/142 (60.56%), Postives = 109/142 (76.76%), Query Frame = 1
Query:    1 KMALMSTFLPVGYPHSVSPEYLRFQGWNIAQDLTTYLRGVLATQAVLEGMGVGRAGSTSLAATIQWLARDGSSMVGSLLFTSLASGDFGVNLKSWRLFADVANDVGMTLELLAPAVGGGSRFLELVCLASVFKASCGVAAGA 426
            K +L   FLPVGYPHSVS EY  +Q W+  Q + +YLRGVLATQA+L G+GVG+ G+T+LAATI W+ +DGS MVG L F +  S  F VN+K+WRLFADVAN+VG+TL+LLAP  G    FL ++C+A+VFKA CGV+AGA
Sbjct:    9 KASLAGAFLPVGYPHSVSKEYFSYQAWDTVQAMCSYLRGVLATQALLRGVGVGKEGATALAATIIWVLKDGSGMVGGLGFATFCSVGFDVNVKTWRLFADVANNVGLTLDLLAPMAG--DYFLLVICVANVFKAMCGVSAGA 148          
BLAST of mRNA_C-tenellus_contig11594.1.1 vs. uniprot
Match: A0A482SIE4_9ARCH (RUS1 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIE4_9ARCH)

HSP 1 Score: 157 bits (398), Expect = 3.610e-43
Identity = 81/136 (59.56%), Postives = 101/136 (74.26%), Query Frame = 1
Query:   19 TFLPVGYPHSVSPEYLRFQGWNIAQDLTTYLRGVLATQAVLEGMGVGRAGSTSLAATIQWLARDGSSMVGSLLFTSLASGDFGVNLKSWRLFADVANDVGMTLELLAPAVGGGSRFLELVCLASVFKASCGVAAGA 426
            TFLP+GYP +V  EY  +Q WN+ QDL +YLRG++AT AVL GMGVGRA  TS+ ATI W+ RDG+S++G LLFTSL+S +F  N+K WRLFAD  N+VG+TL++L P       FL LVC+ S  KA CGVAAGA
Sbjct:  101 TFLPLGYPKTVPAEYTAYQAWNVIQDLCSYLRGIMATNAVLAGMGVGRADITSIQATILWVLRDGASLIGGLLFTSLSSYNFVQNIKFWRLFADSINNVGITLDMLTPYFP--LHFLPLVCVGSTCKALCGVAAGA 234          
BLAST of mRNA_C-tenellus_contig11594.1.1 vs. uniprot
Match: A0A7S2TJN0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TJN0_9EUKA)

HSP 1 Score: 149 bits (375), Expect = 6.200e-43
Identity = 76/137 (55.47%), Postives = 98/137 (71.53%), Query Frame = 1
Query:   16 STFLPVGYPHSVSPEYLRFQGWNIAQDLTTYLRGVLATQAVLEGMGVGRAGSTSLAATIQWLARDGSSMVGSLLFTSLASGDFGVNLKSWRLFADVANDVGMTLELLAPAVGGGSRFLELVCLASVFKASCGVAAGA 426
            S FLP+GYP SV+ EYL +Q W+  Q L +YLRGVLA +A  EG+GVG   +T+ AAT+QW+ +DG  MVGSLLF SL    F  N+KSWRLFAD+ N+VG+ L+++AP       FL +VC A++ KA CGVAAGA
Sbjct:   14 SVFLPIGYPSSVATEYLEYQAWDTVQALCSYLRGVLAAKAWFEGVGVGNTEATAAAATLQWVMKDGFGMVGSLLFASLCGPYFDTNVKSWRLFADLINNVGLFLDMIAPLTQ--EYFLLVVCFATICKAMCGVAAGA 148          
BLAST of mRNA_C-tenellus_contig11594.1.1 vs. uniprot
Match: M4BWZ3_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BWZ3_HYAAE)

HSP 1 Score: 149 bits (376), Expect = 9.700e-40
Identity = 74/139 (53.24%), Postives = 99/139 (71.22%), Query Frame = 1
Query:   10 LMSTFLPVGYPHSVSPEYLRFQGWNIAQDLTTYLRGVLATQAVLEGMGVGRAGSTSLAATIQWLARDGSSMVGSLLFTSLASGDFGVNLKSWRLFADVANDVGMTLELLAPAVGGGSRFLELVCLASVFKASCGVAAGA 426
            +   FLP GYP+SVS +Y+ FQ W+  Q + +YLRGVLATQ+VL+ +GVG   +T LAA +QW+ RDGS M+G L F  L    F +N+K WRLFADV NDVG+TL+++AP V   +   E++CL+S+FK  CGVA GA
Sbjct:   72 IQEMFLPAGYPNSVSEDYVSFQLWDTIQAMCSYLRGVLATQSVLQSVGVGNDTATPLAAALQWVLRDGSGMIGGLTFAYLVGPKFDLNVKRWRLFADVVNDVGLTLDMIAPLVP--TLVTEVLCLSSIFKTMCGVAVGA 208          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11594.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLL8_ECTSI1.160e-5970.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
I2CPN2_NANGC5.200e-5462.68Uncharacterized protein (Fragment) n=2 Tax=Nannoch... [more]
L1IND8_GUITC2.890e-5160.56Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
W7U3D2_9STRA2.910e-5162.68Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A7S0EV14_9CRYP2.390e-5060.56Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A813KE75_POLGL2.820e-4860.56Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
A0A813HLD8_POLGL1.700e-4660.56Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A482SIE4_9ARCH3.610e-4359.56RUS1 family protein n=1 Tax=archaeon TaxID=1906665... [more]
A0A7S2TJN0_9EUKA6.200e-4355.47Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
M4BWZ3_HYAAE9.700e-4053.24Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11594contigC-tenellus_contig11594:1911..3189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLL8
Preferred nameC16orf58
PFAMsDUF647
Model size426
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.82e-60
EggNOG OGsKOG4249@1|root,KOG4249@2759|Eukaryota
Ec32 ortholog descriptionRoot UVB sensitive family
Ec32 orthologEc-17_000660.1
Descriptionresponse to UV-B
Cds size423
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.2645853-UTR-C-tenellus_contig11594:1910..19131680789185.2645853-UTR-C-tenellus_contig11594:1910..1913Choristocarpus tenellus KU2346UTRC-tenellus_contig11594 1911..1913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.27462-CDS-C-tenellus_contig11594:1913..20031680789185.27462-CDS-C-tenellus_contig11594:1913..2003Choristocarpus tenellus KU2346CDSC-tenellus_contig11594 1914..2003 +
1680789185.2827685-CDS-C-tenellus_contig11594:2856..31891680789185.2827685-CDS-C-tenellus_contig11594:2856..3189Choristocarpus tenellus KU2346CDSC-tenellus_contig11594 2857..3189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11594.1.1prot_C-tenellus_contig11594.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11594 1914..3189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11594.1.1

>prot_C-tenellus_contig11594.1.1 ID=prot_C-tenellus_contig11594.1.1|Name=mRNA_C-tenellus_contig11594.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=141bp
MALMSTFLPVGYPHSVSPEYLRFQGWNIAQDLTTYLRGVLATQAVLEGMG
VGRAGSTSLAATIQWLARDGSSMVGSLLFTSLASGDFGVNLKSWRLFADV
ANDVGMTLELLAPAVGGGSRFLELVCLASVFKASCGVAAGA
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mRNA from alignment at C-tenellus_contig11594:1911..3189+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11594.1.1 ID=mRNA_C-tenellus_contig11594.1.1|Name=mRNA_C-tenellus_contig11594.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1279bp|location=Sequence derived from alignment at C-tenellus_contig11594:1911..3189+ (Choristocarpus tenellus KU2346)
AAGATGGCATTGATGTCCACCTTCCTTCCAGTGGGTTACCCGCATTCTGT CAGCCCCGAGTACCTGCGTTTTCAGGGTTGGAACATCGCACAGGTGGGAA ATTGTGTGTGTGGATATTCCATGGGTTAAGGAGTTGGGAGTATGTTGGTG GATGGATGCATTGATATATGGGGGCATCATTATTGAATGATGTAATGACT TAGGAGGCTAGGGGACTTTGCGGATTGAATGTATCCTGTTGGCTTGATGT GGCCATTTTGCTCTTGATTCTGGTTTAGAAATATGTTGATATGGTACAAG TTCAATATCCTGTGGAGGTAAGCAGTACCCCACTATTCTTGGGATTACAC GCTCTATTTCTGTGCCACTTATGTAAATAGGAACAAAAGGTGAAGGGTGG CATGTAAGAACACTCTTCCCCTCTCGATAACCTCTTGGGTGCAGCTTTTT TTGCACCATGGCCAAGTGAGTACTGTTGTCATGCCAACATACTTCAATCG TCTTGAGGGATGCAAATCTTTTCATTTTCATCTCAAGCATGTTGATTGAG AGCATTATTGTTTTTAAATCTACTCTTTGTAGCCTCCCACAAACTTGAGG TCCAAGTCCATCATGATAATTTGACTCAAGCCTTGCGTTTCTTTATTGCT GCTAACCTTAGGCAAGTGTAGAATGCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCGCGCGCGGCCCTAAGG GAGCTTCTGAGCTGCAGCACCGTGCGAGCGANNNNNNNNNNTATTGACAC CCTTCTCTTTTTTCTTTTTTCCTCTCCTTTCCTCAATTGAGTAAACCCCC CCCCCCCCCCCCCCCCCGTGTCTACATTACCTCCTTCCCTCTTCCATGCC CTCTCCCTCCAACATATGCGTATGTATCATTTGATATTTTTTGTAGGATC TAACAACCTACCTCCGAGGTGTGCTGGCTACGCAGGCAGTGCTAGAGGGC ATGGGTGTAGGCCGTGCTGGCTCCACCTCCCTTGCTGCAACCATTCAGTG GTTGGCAAGGGATGGATCGAGCATGGTGGGCTCATTACTGTTCACCTCCC TTGCCTCAGGCGACTTTGGAGTGAACCTTAAGTCATGGAGGCTCTTTGCA GATGTTGCCAATGATGTCGGCATGACACTCGAGTTGCTAGCCCCGGCTGT TGGGGGAGGCTCGCGCTTTCTTGAGCTGGTTTGCCTAGCCAGCGTGTTCA AAGCCTCTTGTGGGGTTGCTGCAGGCGCC
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Coding sequence (CDS) from alignment at C-tenellus_contig11594:1911..3189+

>mRNA_C-tenellus_contig11594.1.1 ID=mRNA_C-tenellus_contig11594.1.1|Name=mRNA_C-tenellus_contig11594.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=423bp|location=Sequence derived from alignment at C-tenellus_contig11594:1911..3189+ (Choristocarpus tenellus KU2346)
ATGGCATTGATGTCCACCTTCCTTCCAGTGGGTTACCCGCATTCTGTCAG
CCCCGAGTACCTGCGTTTTCAGGGTTGGAACATCGCACAGGATCTAACAA
CCTACCTCCGAGGTGTGCTGGCTACGCAGGCAGTGCTAGAGGGCATGGGT
GTAGGCCGTGCTGGCTCCACCTCCCTTGCTGCAACCATTCAGTGGTTGGC
AAGGGATGGATCGAGCATGGTGGGCTCATTACTGTTCACCTCCCTTGCCT
CAGGCGACTTTGGAGTGAACCTTAAGTCATGGAGGCTCTTTGCAGATGTT
GCCAATGATGTCGGCATGACACTCGAGTTGCTAGCCCCGGCTGTTGGGGG
AGGCTCGCGCTTTCTTGAGCTGGTTTGCCTAGCCAGCGTGTTCAAAGCCT
CTTGTGGGGTTGCTGCAGGCGCC
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