mRNA_C-tenellus_contig11593.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11593.1.1
Unique NamemRNA_C-tenellus_contig11593.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5KDD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD0_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 4.610e-51
Identity = 103/296 (34.80%), Postives = 160/296 (54.05%), Query Frame = 1
Query:    1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGN-TRNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVR 885
            S L A+ EKCRPV  G   RR  A+    +W+P LEE  R A QFGV V   +E+  +D +L ++ G WV+  D  NAFN+ + +A +    +++P L+ Y+++ Y   +   ++ +D G  + +  +SGVQQGD +GP L+F +    + ++++ +   GVS + Y DD  +  + I    I     L   L+ VGI +N GK+ A  P GH  TP+E  LL   G+ +A    G   +G P+GTD +      +V+   G   LA  L  + DK+VA L+ S SL+ R G + R
Sbjct:   26 SSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAKAAKSVPNLVGYIARCYDEISAKSIYAMDSGERRTIECKSGVQQGDGMGPPLFFFILFPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVLTEGGADKLARMLVHMPDKQVAHLVTSQSLTQRSGNIER 319          
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.130e-47
Identity = 103/296 (34.80%), Postives = 158/296 (53.38%), Query Frame = 1
Query:    1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNT-RNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVR 885
            S L A+ EKCRPV  G   RR  A+    +W+P LEE  R A QFGV V   +E+  +D +L ++ G WV+  D  NAFN+ + +A +    +++P L+ Y+++ Y       ++ +D G  + +  +SGVQQGD +GP L+  +    + ++++ +   GV  + Y DD  +  + I    I     L   L+ VGI +N GK+ A  P GH  TP+E  LL   G+ +A    G   +G P+GTD +      +VI   G   LA  L  + DK+VA L+ S SL+ R GY+ R
Sbjct:  438 SSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 731          
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 2.650e-47
Identity = 102/296 (34.46%), Postives = 158/296 (53.38%), Query Frame = 1
Query:    1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNT-RNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVR 885
            S L A+ EKCRPV  G   RR  A+    +W+P LEE  R A QFGV V   +E+  +D +L ++ G WV+  D  NAFN+ + +A +    +++P L+ Y+++ Y       ++ +D G  + +  +SGVQQGD +GP L+  +    + ++++ +   GV  + Y DD  +  ++I    I     L   L+ VGI +N GK+ A  P GH  TP+E   L   G+ +A    G   +G P+GTD +      +VI   G   LA  L  + DK+VA L+ S SL+ R GY+ R
Sbjct:  437 SSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGGAEKLARLLVRMPDKQVAHLVTSQSLTQRSGYIER 730          
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.820e-46
Identity = 103/297 (34.68%), Postives = 157/297 (52.86%), Query Frame = 1
Query:    1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNT-RNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDT-PISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVR 885
            S L A+ EKCRPV  G   RR  A+    +W+P LEE  R A QFGV V   +E+  +D +L ++ G WV+  D  NAFN+ + +A +    +++P L+ Y+++ Y       ++ +D G  + +  +SGVQQGD +GP L+       + ++++ +   GV  + Y DD   +  + I    I     L   L+ VGI +N GK+ A  P GH  TP+E  LL   G+ +A    G   +G P+GTD +      +VI   G   LA  L  + DK+VA L+ S SL+ R GY+ R
Sbjct:   69 SSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 363          
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 4.190e-46
Identity = 102/296 (34.46%), Postives = 156/296 (52.70%), Query Frame = 1
Query:    1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNT-RNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVR 885
            S L A+ EKCRPV  G   RR  A+    +W+P LEE  R A QFGV V   +E+  +D +L ++ G WV+  D  NAFN+ + +A +    +++P L+ Y+++ Y       ++ +D G  + +  +SGVQQGD +GP L+  +    + ++++ +   GV  + Y DD  +  + I    I     L   L+ VGI +N GK+ A  P G    P+E  LL   G+ +A    G   +G P+GTD +      +VI   G   LA  L  + DK+VA L+ S SL+ R GYL R
Sbjct:  459 SSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALHPPGRDVAPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAIKVIAEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYLER 752          
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.080e-41
Identity = 91/277 (32.85%), Postives = 146/277 (52.71%), Query Frame = 1
Query:   58 RRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNT-RNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVR 885
            RR  A+    +W+P LEE  R A QFG  V   +E+  +D +L ++ G WV+  D  NAFN+ + +A +    +++P L+ Y+++ Y       ++ +D G  + +  +SGVQQGD +GP L+  +    + ++++ +   GV  + Y DD  +  + I    I     +   L+ VGI +N GK+ A  P GH  TP+E  LL   G+ +A    G   +G P+GTD +      +VI   G   LA  L  + DK+VA L+ S SL+ R GY+ R
Sbjct:    4 RRLIAAGTVREWKPKLEEIFREADQFGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 278          
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 7.120e-40
Identity = 86/264 (32.58%), Postives = 142/264 (53.79%), Query Frame = 1
Query:    1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNT-RNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTR 789
            S L A+ EKCRPV  G   RR  A+    +W+P LEE  R A QFGV V   +E+  +D +L ++ G WV+  D  +AFN+ + +  +    +++P +L Y+++ Y       ++ +D G  + +  +SGVQQGD +GP L+  +    + ++++++   GV  + Y DD  +    I    I     L   L+ VGI +N GK+ A  P GH  TP+E  LL   G+ +A    G   +G P+GTD    A++E+ ++++  R
Sbjct:   62 SSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTD----AYVEDKLQAAPRR 319          
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 5.750e-34
Identity = 72/216 (33.33%), Postives = 115/216 (53.24%), Query Frame = 1
Query:    1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNTRNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTP 648
            S L A+ EKCRPV  G   RR  A+    +W+P LEE  R A QFGV V   +E+  +D +L ++ G WV+  D  N  N+ + +A +    +++P L+  +++ Y      ++ +D G  + +  +SGVQQGD +GP L+  +    + ++++ +   GVS + Y DD  +  + I    I     L   L+ VGI +N GK+ A  P GH  TP
Sbjct:  115 SSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVTGGVEQVAMDAQLVDQTGHWVVQTDCSNGLNTGKRTAIMAQAAKSVPDLVGCIARCYELPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAESIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTP 330          
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 131 bits (330), Expect = 1.740e-30
Identity = 92/307 (29.97%), Postives = 147/307 (47.88%), Query Frame = 1
Query:    1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNTRNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQ----LKPNLQDVGINLNMGKTFAATPQGHQPTP---SELELLSTTGINLAPNPSGFVTLGAPVGT-DYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVRVTPP 897
            + LSAI +KCRP+A G   RR      C  + P L E     GQ+GV VP   E       L ++ G+ +++ D RNAFNS++ SA + AL + +P +L Y + +Y      L    + G  ++PS +GVQQG  LGPL Y     K L+  ++     G     + DD  +   + +    AA E     ++ N+Q +G+ LN  K+    P G         + E L  T + +A    G   +G PVG  DY  R+ ++  I       L   ++ ++D + +  +  +S ++RL +L+R  PP
Sbjct: 1222 ANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSGMAVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVLLPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEG--GMRIVGVPVGEPDYIKRSALD--IARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPP 1524          
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.160e-29
Identity = 80/268 (29.85%), Postives = 133/268 (49.63%), Query Frame = 1
Query:   85 TDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNT-RNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVR 885
            ++WR Y +  ++       G    IE     ++   + G WV+  D  NAFN+ + +A +    +++P L+ Y+++ Y       ++ +D G  + +  +SGVQQGD +GP L+  +    + ++++ +   GVS + Y DD  +  + I    I     L   L+ VGI +N GK+ A  P GH  TP+E  LL   G+ +A    G   +G P+ TD +      +VI   G   LA  L  + DK+VA L+ S SL+ R G + R
Sbjct:  493 SEWRCYDQIPAKAIYAMDSGERPTIE-CKSGVQQGXQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAEFIQVIPDLVNELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIETDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGCIER 757          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDD0_9PHAE4.610e-5134.80Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE1.130e-4734.80Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE2.650e-4734.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE1.820e-4634.68Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JI32_9PHAE4.190e-4634.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE1.080e-4132.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K0V7_9PHAE7.120e-4032.58Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KT19_9PHAE5.750e-3433.33Reverse transcriptase domain-containing protein (F... [more]
A0A6P0N5L4_9CYAN1.740e-3029.97Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5KJC0_9PHAE1.160e-2929.85Reverse transcriptase domain-containing protein (F... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11593contigC-tenellus_contig11593:4199..5107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15719669
PFAMsRVT_1,zf-RVT
Model size909
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.93e-17
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39QPF@33154|Opisthokonta
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size909
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.2258017-CDS-C-tenellus_contig11593:4198..51071680789185.2258017-CDS-C-tenellus_contig11593:4198..5107Choristocarpus tenellus KU2346CDSC-tenellus_contig11593 4199..5107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11593.1.1prot_C-tenellus_contig11593.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11593 4199..5107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11593.1.1

>prot_C-tenellus_contig11593.1.1 ID=prot_C-tenellus_contig11593.1.1|Name=mRNA_C-tenellus_contig11593.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=303bp
SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVP
NCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLS
YVSKVYGNTRNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQ
QVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLN
MGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNR
AHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVRVTPPL
LAR
back to top

mRNA from alignment at C-tenellus_contig11593:4199..5107-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11593.1.1 ID=mRNA_C-tenellus_contig11593.1.1|Name=mRNA_C-tenellus_contig11593.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=909bp|location=Sequence derived from alignment at C-tenellus_contig11593:4199..5107- (Choristocarpus tenellus KU2346)
TCCAGACTGTCCGCAATCGAGGAGAAGTGTCGCCCAGTTGCCTGTGGGTC TTTTGTTAGGAGGGCATGTGCTTCAGCTTTCTGCACGGACTGGCGCCCCT ACCTAGAGGAATTTTCCAGGGGAGCAGGACAATTCGGCGTCGGGGTCCCA AATTGCATTGAACGTGCACTCCTGGATATCCGCCTAAGGAATGAGTGCGG AGAATGGGTCATCAGTCTGGACGGAAGGAATGCTTTCAACAGCGTACGCC ACTCAGCCTTCATCCAGGCCCTCCCAGAGACCCTACCAGGCCTCCTATCT TATGTTTCCAAGGTATATGGGAATACAAGGAATTTTCTTTTCCCCCTAGA TGAGGGAGGGACGAAGATTCTACCATCAAGATCTGGGGTCCAACAGGGAG ACCCACTAGGCCCCCTATTATATTTCATGGTGACACACAAGGCCTTGCAA CAGGTCCAATCAGTTTTCGGACCCCAAGGGGTTTCCTCCCGGAGATATCA GGATGACACGCCCATTTCGGCGAGGGAGATCAACACTATTATCATAGCTG CTTTCGAGCAGCTAAAACCTAATCTCCAGGACGTAGGCATCAACCTAAAC ATGGGCAAGACATTTGCCGCAACTCCCCAGGGCCACCAACCCACGCCCTC GGAACTAGAGCTCCTTTCCACGACAGGAATCAACCTAGCCCCTAACCCCA GTGGTTTTGTCACTCTAGGGGCTCCAGTAGGAACAGATTACTTCAATCGA GCTCACATGGAGGAGGTGATAGAGAGCTCTGGGACACGAGCTTTAGCCAC ACACCTAAGCGAGATTGAGGACAAGAAGGTGGCCTGGCTCCTCAACTCCT GGTCCCTCTCCTCCCGGCTAGGCTATCTTGTGAGGGTCACTCCCCCCCTC CTGGCACGC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11593:4199..5107-

>mRNA_C-tenellus_contig11593.1.1 ID=mRNA_C-tenellus_contig11593.1.1|Name=mRNA_C-tenellus_contig11593.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=909bp|location=Sequence derived from alignment at C-tenellus_contig11593:4199..5107- (Choristocarpus tenellus KU2346)
TCCAGACTGTCCGCAATCGAGGAGAAGTGTCGCCCAGTTGCCTGTGGGTC
TTTTGTTAGGAGGGCATGTGCTTCAGCTTTCTGCACGGACTGGCGCCCCT
ACCTAGAGGAATTTTCCAGGGGAGCAGGACAATTCGGCGTCGGGGTCCCA
AATTGCATTGAACGTGCACTCCTGGATATCCGCCTAAGGAATGAGTGCGG
AGAATGGGTCATCAGTCTGGACGGAAGGAATGCTTTCAACAGCGTACGCC
ACTCAGCCTTCATCCAGGCCCTCCCAGAGACCCTACCAGGCCTCCTATCT
TATGTTTCCAAGGTATATGGGAATACAAGGAATTTTCTTTTCCCCCTAGA
TGAGGGAGGGACGAAGATTCTACCATCAAGATCTGGGGTCCAACAGGGAG
ACCCACTAGGCCCCCTATTATATTTCATGGTGACACACAAGGCCTTGCAA
CAGGTCCAATCAGTTTTCGGACCCCAAGGGGTTTCCTCCCGGAGATATCA
GGATGACACGCCCATTTCGGCGAGGGAGATCAACACTATTATCATAGCTG
CTTTCGAGCAGCTAAAACCTAATCTCCAGGACGTAGGCATCAACCTAAAC
ATGGGCAAGACATTTGCCGCAACTCCCCAGGGCCACCAACCCACGCCCTC
GGAACTAGAGCTCCTTTCCACGACAGGAATCAACCTAGCCCCTAACCCCA
GTGGTTTTGTCACTCTAGGGGCTCCAGTAGGAACAGATTACTTCAATCGA
GCTCACATGGAGGAGGTGATAGAGAGCTCTGGGACACGAGCTTTAGCCAC
ACACCTAAGCGAGATTGAGGACAAGAAGGTGGCCTGGCTCCTCAACTCCT
GGTCCCTCTCCTCCCGGCTAGGCTATCTTGTGAGGGTCACTCCCCCCCTC
CTGGCACGC
back to top