mRNA_C-tenellus_contig11593.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5KDD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD0_9PHAE) HSP 1 Score: 184 bits (466), Expect = 4.610e-51 Identity = 103/296 (34.80%), Postives = 160/296 (54.05%), Query Frame = 1 Query: 1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGN-TRNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVR 885 S L A+ EKCRPV G RR A+ +W+P LEE R A QFGV V +E+ +D +L ++ G WV+ D NAFN+ + +A + +++P L+ Y+++ Y + ++ +D G + + +SGVQQGD +GP L+F + + ++++ + GVS + Y DD + + I I L L+ VGI +N GK+ A P GH TP+E LL G+ +A G +G P+GTD + +V+ G LA L + DK+VA L+ S SL+ R G + R Sbjct: 26 SSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAKAAKSVPNLVGYIARCYDEISAKSIYAMDSGERRTIECKSGVQQGDGMGPPLFFFILFPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVLTEGGADKLARMLVHMPDKQVAHLVTSQSLTQRSGNIER 319
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 181 bits (459), Expect = 1.130e-47 Identity = 103/296 (34.80%), Postives = 158/296 (53.38%), Query Frame = 1 Query: 1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNT-RNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVR 885 S L A+ EKCRPV G RR A+ +W+P LEE R A QFGV V +E+ +D +L ++ G WV+ D NAFN+ + +A + +++P L+ Y+++ Y ++ +D G + + +SGVQQGD +GP L+ + + ++++ + GV + Y DD + + I I L L+ VGI +N GK+ A P GH TP+E LL G+ +A G +G P+GTD + +VI G LA L + DK+VA L+ S SL+ R GY+ R Sbjct: 438 SSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 731
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 179 bits (453), Expect = 2.650e-47 Identity = 102/296 (34.46%), Postives = 158/296 (53.38%), Query Frame = 1 Query: 1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNT-RNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVR 885 S L A+ EKCRPV G RR A+ +W+P LEE R A QFGV V +E+ +D +L ++ G WV+ D NAFN+ + +A + +++P L+ Y+++ Y ++ +D G + + +SGVQQGD +GP L+ + + ++++ + GV + Y DD + ++I I L L+ VGI +N GK+ A P GH TP+E L G+ +A G +G P+GTD + +VI G LA L + DK+VA L+ S SL+ R GY+ R Sbjct: 437 SSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGGAEKLARLLVRMPDKQVAHLVTSQSLTQRSGYIER 730
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE) HSP 1 Score: 175 bits (444), Expect = 1.820e-46 Identity = 103/297 (34.68%), Postives = 157/297 (52.86%), Query Frame = 1 Query: 1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNT-RNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDT-PISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVR 885 S L A+ EKCRPV G RR A+ +W+P LEE R A QFGV V +E+ +D +L ++ G WV+ D NAFN+ + +A + +++P L+ Y+++ Y ++ +D G + + +SGVQQGD +GP L+ + ++++ + GV + Y DD + + I I L L+ VGI +N GK+ A P GH TP+E LL G+ +A G +G P+GTD + +VI G LA L + DK+VA L+ S SL+ R GY+ R Sbjct: 69 SSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 363
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 176 bits (446), Expect = 4.190e-46 Identity = 102/296 (34.46%), Postives = 156/296 (52.70%), Query Frame = 1 Query: 1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNT-RNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVR 885 S L A+ EKCRPV G RR A+ +W+P LEE R A QFGV V +E+ +D +L ++ G WV+ D NAFN+ + +A + +++P L+ Y+++ Y ++ +D G + + +SGVQQGD +GP L+ + + ++++ + GV + Y DD + + I I L L+ VGI +N GK+ A P G P+E LL G+ +A G +G P+GTD + +VI G LA L + DK+VA L+ S SL+ R GYL R Sbjct: 459 SSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALHPPGRDVAPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAIKVIAEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYLER 752
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE) HSP 1 Score: 162 bits (411), Expect = 1.080e-41 Identity = 91/277 (32.85%), Postives = 146/277 (52.71%), Query Frame = 1 Query: 58 RRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNT-RNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVR 885 RR A+ +W+P LEE R A QFG V +E+ +D +L ++ G WV+ D NAFN+ + +A + +++P L+ Y+++ Y ++ +D G + + +SGVQQGD +GP L+ + + ++++ + GV + Y DD + + I I + L+ VGI +N GK+ A P GH TP+E LL G+ +A G +G P+GTD + +VI G LA L + DK+VA L+ S SL+ R GY+ R Sbjct: 4 RRLIAAGTVREWKPKLEEIFREADQFGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 278
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE) HSP 1 Score: 155 bits (391), Expect = 7.120e-40 Identity = 86/264 (32.58%), Postives = 142/264 (53.79%), Query Frame = 1 Query: 1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNT-RNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTR 789 S L A+ EKCRPV G RR A+ +W+P LEE R A QFGV V +E+ +D +L ++ G WV+ D +AFN+ + + + +++P +L Y+++ Y ++ +D G + + +SGVQQGD +GP L+ + + ++++++ GV + Y DD + I I L L+ VGI +N GK+ A P GH TP+E LL G+ +A G +G P+GTD A++E+ ++++ R Sbjct: 62 SSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTD----AYVEDKLQAAPRR 319
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE) HSP 1 Score: 135 bits (341), Expect = 5.750e-34 Identity = 72/216 (33.33%), Postives = 115/216 (53.24%), Query Frame = 1 Query: 1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNTRNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTP 648 S L A+ EKCRPV G RR A+ +W+P LEE R A QFGV V +E+ +D +L ++ G WV+ D N N+ + +A + +++P L+ +++ Y ++ +D G + + +SGVQQGD +GP L+ + + ++++ + GVS + Y DD + + I I L L+ VGI +N GK+ A P GH TP Sbjct: 115 SSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVTGGVEQVAMDAQLVDQTGHWVVQTDCSNGLNTGKRTAIMAQAAKSVPDLVGCIARCYELPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAESIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTP 330
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 131 bits (330), Expect = 1.740e-30 Identity = 92/307 (29.97%), Postives = 147/307 (47.88%), Query Frame = 1 Query: 1 SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNTRNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQ----LKPNLQDVGINLNMGKTFAATPQGHQPTP---SELELLSTTGINLAPNPSGFVTLGAPVGT-DYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVRVTPP 897 + LSAI +KCRP+A G RR C + P L E GQ+GV VP E L ++ G+ +++ D RNAFNS++ SA + AL + +P +L Y + +Y L + G ++PS +GVQQG LGPL Y K L+ ++ G + DD + + + AA E ++ N+Q +G+ LN K+ P G + E L T + +A G +G PVG DY R+ ++ I L ++ ++D + + + +S ++RL +L+R PP Sbjct: 1222 ANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSGMAVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVLLPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEG--GMRIVGVPVGEPDYIKRSALD--IARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPP 1524
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.160e-29 Identity = 80/268 (29.85%), Postives = 133/268 (49.63%), Query Frame = 1 Query: 85 TDWRPYLEEFSRGAGQFGVGVPNCIERALLDIRLRNECGEWVISLDGRNAFNSVRHSAFIQALPETLPGLLSYVSKVYGNT-RNFLFPLDEGGTKILPSRSGVQQGDPLGPLLYFMVTHKALQQVQSVFGPQGVSSRRYQDDTPISAREINTIIIAAFEQLKPNLQDVGINLNMGKTFAATPQGHQPTPSELELLSTTGINLAPNPSGFVTLGAPVGTDYFNRAHMEEVIESSGTRALATHLSEIEDKKVAWLLNSWSLSSRLGYLVR 885 ++WR Y + ++ G IE ++ + G WV+ D NAFN+ + +A + +++P L+ Y+++ Y ++ +D G + + +SGVQQGD +GP L+ + + ++++ + GVS + Y DD + + I I L L+ VGI +N GK+ A P GH TP+E LL G+ +A G +G P+ TD + +VI G LA L + DK+VA L+ S SL+ R G + R Sbjct: 493 SEWRCYDQIPAKAIYAMDSGERPTIE-CKSGVQQGXQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAEFIQVIPDLVNELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIETDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGCIER 757 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11593.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig11593.1.1 >prot_C-tenellus_contig11593.1.1 ID=prot_C-tenellus_contig11593.1.1|Name=mRNA_C-tenellus_contig11593.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=303bp SRLSAIEEKCRPVACGSFVRRACASAFCTDWRPYLEEFSRGAGQFGVGVPback to top mRNA from alignment at C-tenellus_contig11593:4199..5107- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig11593.1.1 ID=mRNA_C-tenellus_contig11593.1.1|Name=mRNA_C-tenellus_contig11593.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=909bp|location=Sequence derived from alignment at C-tenellus_contig11593:4199..5107- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig11593:4199..5107- >mRNA_C-tenellus_contig11593.1.1 ID=mRNA_C-tenellus_contig11593.1.1|Name=mRNA_C-tenellus_contig11593.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=909bp|location=Sequence derived from alignment at C-tenellus_contig11593:4199..5107- (Choristocarpus tenellus KU2346)back to top |