mRNA_C-tenellus_contig1159.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1159.1.1
Unique NamemRNA_C-tenellus_contig1159.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1159.1.1 vs. uniprot
Match: A0A2P6UYV5_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV5_9CHLO)

HSP 1 Score: 249 bits (637), Expect = 9.260e-68
Identity = 150/453 (33.11%), Postives = 229/453 (50.55%), Query Frame = 2
Query:  476 EPKTVRSAHSSPECDLWDRARAEEMSGLLLNKVWVEAVLPLGRRAIDTKWIHISKINKFGEVVKHKARLVAKGFRQIEGLDYQDTFAPTPSPAFLSNVEQTLVC-----------------------YAM*EKALFVL**PPT*MIYW*LVKLMFLIW--------VRSRIEEQFSIEDFGDTEYYMGCEISHDRNARTVTISQTRYIKSVCHRFGMDGAKKRSVPHDLSRALDKS*NHPSVDESAPYREAVGSLMWASVMTRLDISNAVREVAKYSSNPKVTHWRVVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWNDRRSVTGGAIMFAGGAISWTSKVQRVVALSSTESEYIXXXXXXXXLLFLRSVFEFIQPQFPRHCIDLFEDNDGACKLVRNATGSTRTK*IDVRHHFLRDLSRKEEIRVVFVGTANQRADVLTKNLP 1741
            EP T++ A S P+   W  A  +EM+ L+ N  W     P G + I  KW++  K +  G + ++KARLV +GFRQ EG+DY + FAP    + L  V  T                          YA  +  LF+   P         V  + ++         ++ ++   F   D  +  +++G ++  DR A+T+ ++Q+R IK +  ++GMD AK  S P + S  L K    P   ++  Y   VGSLM+ S+ TR DI+ AV  +A++ +NP   HW   K +L YL   P +G++FG       L  + DA +AGD + RRS TG A +F GGAISW S++Q  VA S+TE+EYI         L+LR +F+ +      H + +  D+  A KL++N   S R+K IDV HHF R+   + E+   ++ T +  AD LTK +P
Sbjct:  596 EPTTMKEALSGPDAAAWQLAMDDEMASLIANDTWTLCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYA--DAGLFISTDPSKLAYLLTYVDDILIVTPKTTSSAAIKQKLMAAFEARDLDNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQ-GTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKLFQDLSLDL--HTVAICADSQTALKLLKNPIVSNRSKHIDVVHHFARERVARNEVTFEYISTESMVADALTKPVP 1041          
BLAST of mRNA_C-tenellus_contig1159.1.1 vs. uniprot
Match: A0A2P6UZ08_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZ08_9CHLO)

HSP 1 Score: 249 bits (637), Expect = 1.040e-67
Identity = 150/453 (33.11%), Postives = 229/453 (50.55%), Query Frame = 2
Query:  476 EPKTVRSAHSSPECDLWDRARAEEMSGLLLNKVWVEAVLPLGRRAIDTKWIHISKINKFGEVVKHKARLVAKGFRQIEGLDYQDTFAPTPSPAFLSNVEQTLVC-----------------------YAM*EKALFVL**PPT*MIYW*LVKLMFLIW--------VRSRIEEQFSIEDFGDTEYYMGCEISHDRNARTVTISQTRYIKSVCHRFGMDGAKKRSVPHDLSRALDKS*NHPSVDESAPYREAVGSLMWASVMTRLDISNAVREVAKYSSNPKVTHWRVVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWNDRRSVTGGAIMFAGGAISWTSKVQRVVALSSTESEYIXXXXXXXXLLFLRSVFEFIQPQFPRHCIDLFEDNDGACKLVRNATGSTRTK*IDVRHHFLRDLSRKEEIRVVFVGTANQRADVLTKNLP 1741
            EP T++ A S P+   W  A  +EM+ L+ N  W     P G + I  KW++  K +  G + ++KARLV +GFRQ EG+DY + FAP    + L  V  T                          YA  +  LF+   P         V  + ++         ++ ++   F   D  +  +++G ++  DR A+T+ ++Q+R IK +  ++GMD AK  S P + S  L K    P   ++  Y   VGSLM+ S+ TR DI+ AV  +A++ +NP   HW   K +L YL   P +G++FG       L  + DA +AGD + RRS TG A +F GGAISW S++Q  VA S+TE+EYI         L+LR +F+ +      H + +  D+  A KL++N   S R+K IDV HHF R+   + E+   ++ T +  AD LTK +P
Sbjct:  758 EPTTMKEALSGPDAAAWQLAMDDEMASLIANDTWTLCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYA--DAGLFISTDPSKPAYLLTYVDDILIVTPKTTSSAAIKQKLMAAFEARDLDNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQ-GTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKLFQDLSLDL--HTVAICADSQTALKLLKNPIVSNRSKHIDVVHHFARERVARNEVTFEYISTESMVADALTKPVP 1203          
BLAST of mRNA_C-tenellus_contig1159.1.1 vs. uniprot
Match: A0A0J7KHD5_LASNI (Retrotransposon ty1-copia subclass n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KHD5_LASNI)

HSP 1 Score: 245 bits (626), Expect = 4.170e-67
Identity = 155/448 (34.60%), Postives = 240/448 (53.57%), Query Frame = 2
Query:  476 EPKTVRSAHSSPECDLWDRARAEEMSGLLLNKVWVEAVLPLGRRAIDTKWIHISKINKFGEVVKHKARLVAKGFRQIEGLDYQDTFAPTPSPAFLSNVEQTLVCYAM*EKALFVL**PPT*MIYW*LVKLMFLIW---------------VRSRIEEQFSIEDFGDTEYYMGCEISHDRNARTVTISQTRYIKSVCHRFGMDGAKKRSVPHDLSRALDKS*NHPSVD----ESAPYREAVGSLMWASVMTRLDISNAVREVAKYSSNPKVTHWRVVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWNDRRSVTGGAIMFAGGAISWTSKVQRVVALSSTESEYIXXXXXXXXLLFLRSVFEFIQPQFPRHCIDLFEDNDGACKLVRNATGSTRTK*IDVRHHFLRDLSRKEEIRVVFVGTANQRADVLTKNLPVRVFRQH 1762
            EPKT   A   P+   W +A  EE++ L+ N  W EA LP GR+AI  KW+   K    GE+V++KARLVA+G+ Q   +DY +T+    SP       + L+  A  +          T  +Y  L + +++                 V   +  +F +   G TEY++G EI  D   RT+ ISQ  Y+  V  + G+  AK  S P + SR    + +  + D    E  P+REAVGSLM+A+ ++R DI  AV  V++Y  NP + HW+ VK I+ Y     + G+ + G +T+  L  Y+D+ YA D + RRS +G   + AGGA+SW S+ QR+VALS+TE+EY+         +++R + E +     +  I++  DN G+ KL++N     RTK IDVR H++R++ +  +I + +V ++ Q AD+LTK LP   F  +
Sbjct:  487 EPKTYGEAILRPDGATWQKAVDEELASLMKNGTWCEADLPPGRQAISAKWVFKLKRGPSGEIVRYKARLVARGYAQRPNVDYTETY----SPVVRYESVRALLAIAAQQDMEIAQGDVKTAFLYGTLDEEIYMTVPDGAPNAGQVTAVDKVMDYLMTEFEVT-IGSTEYFIGLEIKRDCIVRTIKISQRNYLLRVAEKIGLADAKGISTPAE-SRVYLSTTSEDNNDKRDMEKVPFREAVGSLMFAACVSRPDIMFAVSVVSRYLENPGLEHWQAVKRIIRYAKETAAYGIVYDGHNTD-GLIIYSDSDYATDPDTRRSTSGYVTVLAGGAVSWMSQRQRIVALSTTEAEYVAASDATKEAIWIRRLLESVGVN-KKGPIEMRLDNQGSIKLIKNPEFHKRTKHIDVRFHYIREIYKNGQIDIKYVPSSKQLADILTKALPKSTFESN 926          
BLAST of mRNA_C-tenellus_contig1159.1.1 vs. uniprot
Match: A0A2P6V0U4_9CHLO (Gag-Pol poly n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0U4_9CHLO)

HSP 1 Score: 236 bits (603), Expect = 3.070e-64
Identity = 160/510 (31.37%), Postives = 238/510 (46.67%), Query Frame = 2
Query:  476 EPKTVRSAHSSPECDLWDRARAEEMSGLLLNKVWVEAVLPLGRRAIDTKWIHISKINKFGEVVKHKARLVAKGFRQIEGLDYQDTFAP-----------------------------------------TPSPAFLSNVEQTLVCYAM*EKALFVL**PPT*MIYW*------LVKLMF---------------------LIWV----------------RSRIEEQFSIEDFGDTEYYMGCEISHDRNARTVTISQTRYIKSVCHRFGMDGAKKRSVPHDLSRALDKS*NHPSVDESAPYREAVGSLMWASVMTRLDISNAVREVAKYSSNPKVTHWRVVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWNDRRSVTGGAIMFAGGAISWTSKVQRVVALSSTESEYIXXXXXXXXLLFLRSVFEFIQPQFPRHCIDLFEDNDGACKLVRNATGSTRTK*IDVRHHFLRDLSRKEEIRVVFVGTANQRADVLTKNLPVRVF 1753
            EP T++ A S P+   W  A  +EM+ L+ N  W     P G + I  KW++  K +  G + ++KARLV +GFRQ EG+DY + FAP                                         +P P +  + + TL C     KAL+ L   P     W       L KL F                     L +V                + ++   F   D G+  +++G ++  DR A+T+ ++Q+R IK +  ++GMD AK  S P + S  L K    P   ++  Y   VGSLM+ S+ TR DI+ AV  +A++ +NP   HW   K +L YL   P +G++FG       L  + DA +AGD + RRS TG A +F GGAISW S++Q  VA S+TE+EYI         L+LR +F+ +      H + +  D+  A KL++N   S R+K IDV HHF R+   + E+   ++ T +  AD LTK +P   F
Sbjct:  415 EPTTMKEALSGPDAAAWQLAMDDEMASLIANDTWTLCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYVSPPPGYTLS-KPTLCCKL--NKALYGLKQAPR---AWYQTLKAELAKLGFTASQADAGLFISTDPSKPAYLLTYVDDILIVTPKTTSSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQ-GTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKLFQDLSLDL--HTVAICADSQTALKLLKNPIVSNRSKHIDVVHHFARERVARNEVTFEYISTESMVADALTKPVPATKF 913          
BLAST of mRNA_C-tenellus_contig1159.1.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 6.670e-64
Identity = 123/289 (42.56%), Postives = 173/289 (59.86%), Query Frame = 2
Query:  899 EQFSIEDFGDTEYYMGCEISHDRNARTVTISQTRYIKSVCHRFGMDGAKKRSVPHDLSRALDKS*NHPSVDESAPYREAVGSLMWASVMTRLDISNAVREVAKYSSNPKVTHWRVVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYAGDWNDRRSVTGGAIMFAGGAISWTSKVQRVVALSSTESEYIXXXXXXXXLLFLRSVFEFIQPQFPRHCIDLFEDNDGACKLVRNATGSTRTK*IDVRHHFLRDLSRKEEIRVVFVGTANQRADVLTKNLPVRVFRQH 1762
            E   ++  G+ ++Y GC    DR A  +TISQ  Y K +  R G++      +P    R  D   N PSV+   P+R  +GSL+W +++TR DI+NAVR VA+Y S PK+ HWR    IL Y     S G+SF  G  +   L  +ADA YA    DRRSV+GG +M AGGAI+W SK Q+ V LS+T++EY+        +LFLR V+ F+ P+  R CI L+EDN+GA ++ ++   ++ +K IDVRHHFLR L  ++E+ ++ V +  Q AD LTK LP R F  H
Sbjct:   91 EYVPVKSLGELQWYSGCYYERDREAGRLTISQETYTKELGERHGVEWGGGIPLPTTW-RLWDSDVNEPSVEY--PFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPERDFVFH 376          
BLAST of mRNA_C-tenellus_contig1159.1.1 vs. uniprot
Match: A0A2P6UYV9_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=3 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV9_9CHLO)

HSP 1 Score: 236 bits (602), Expect = 8.180e-64
Identity = 153/504 (30.36%), Postives = 234/504 (46.43%), Query Frame = 2
Query:  476 EPKTVRSAHSSPECDLWDRARAEEMSGLLLNKVWVEAVLPLGRRAIDTKWIHISKINKFGEVVKHKARLVAKGFRQIEGLDYQDTFAPTPS------------------------PAFLSNV----------------EQTLVCY------------------------------AM*EKALFVL**PPT*MIYW*LVKLMFLIW--------VRSRIEEQFSIEDFGDTEYYMGCEISHDRNARTVTISQTRYIKSVCHRFGMDGAKKRSVPHDLSRALDKS*NHPSVDESAPYREAVGSLMWASVMTRLDISNAVREVAKYSSNPKVTHWRVVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWNDRRSVTGGAIMFAGGAISWTSKVQRVVALSSTESEYIXXXXXXXXLLFLRSVFEFIQPQFPRHCIDLFEDNDGACKLVRNATGSTRTK*IDVRHHFLRDLSRKEEIRVVFVGTANQRADVLTKNLPVRVF 1753
            EP T++ A S P+   W  A  +EM+ L+ N  W     P G + I  KW++  K +  G + ++KARLV +GFRQ EG+DY + FAP                            AFL+                  + TL C                               +  +  LF+   P         V  + ++         ++ ++   F   D G+  +++G ++  DR A+T+ ++Q+R IK +  ++GMD AK  S P + S  L K    P   ++  Y   VGSLM+ S+ TR DI+ AV  +A++ +NP   HW   K +L YL   P +G++FG       L  + DA +AGD + RRS TG A +F GGAISW S++Q  VA S+TE+EYI         L+LR +F+ +      H + +  D+  A KL++N   S R+K IDV HHF R+   + E+   ++ T +  AD LTK +P   F
Sbjct:  443 EPTTMKEALSGPDAAAWQLAMDDEMASLIANDTWTLCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYVSPPPGYTLGKPTLCCKLNKALHGLKQAPRAWYQTLKAELAKLGFTASQADAGLFISTDPSKPAYLLTYVDDILIVTPKTTSSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQ-GTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKLFQDLSLDL--HTVAICADSQTALKLLKNPIVSNRSKHIDVVHHFARERVARNEVTFEYISTESMVADALTKPVPATKF 941          
BLAST of mRNA_C-tenellus_contig1159.1.1 vs. uniprot
Match: A0A2P6V0G0_9CHLO (Gag-Pol poly n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0G0_9CHLO)

HSP 1 Score: 237 bits (604), Expect = 1.680e-63
Identity = 161/509 (31.63%), Postives = 238/509 (46.76%), Query Frame = 2
Query:  476 EPKTVRSAHSSPECDLWDRARAEEMSGLLLNKVWVEAVLPLGRRAIDTKWIHISKINKFGEVVKHKARLVAKGFRQIEGLDYQDTFAPTPS------------------------PAFLSNV----------------EQTLVCYAM*EKALFVL**PPT*MIYW*------LVKLMF---------------------LIWV----------------RSRIEEQFSIEDFGDTEYYMGCEISHDRNARTVTISQTRYIKSVCHRFGMDGAKKRSVPHDLSRALDKS*NHPSVDESAPYREAVGSLMWASVMTRLDISNAVREVAKYSSNPKVTHWRVVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWNDRRSVTGGAIMFAGGAISWTSKVQRVVALSSTESEYIXXXXXXXXLLFLRSVFEFIQPQFPRHCIDLFEDNDGACKLVRNATGSTRTK*IDVRHHFLRDLSRKEEIRVVFVGTANQRADVLTKNLPVRVF 1753
            EP T++ A S P+   W  A  +EM+ L+ N  W     P G + I  KW++  K +  G + ++KARLV +GFRQ EG+DY + FAP                            AFL+                  + TL C     KAL+ L   P     W       L KL F                     L +V                + ++   F   D G+  +++G ++  DR A+T+ ++Q+R IK +  ++GMD AK  S P + S  L K    P   ++  Y   VGSLM+ S+ TR DI+ AV  +A++ +NP   HW   K +L YL   P +G++FG       L  + DA++AGD + RRS TG A +F GGAISW S++Q  VA S+TE+EYI         L+LR +F+ +      H + +  D+  A KL++N   S R+K IDV HHF R+   + E+   ++ T +  AD LTK +P   F
Sbjct:  832 EPTTMKEALSGPDAAAWQLAMDDEMASLIANDTWTLCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQGLDLHQLDIKTAFLNGTIDEEVYVSPPPGYTLGKPTLCCKL--NKALYGLKQAPR---AWYQTLKAELAKLGFTASQADAGLFISTDPSKPAYLLTYVDDILIVTPKTTSSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQ-GTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWAAAKTVLRYLTGTPDIGITFGAGPPG--LQVFCDANHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKKGLWLRKLFQDLSLDL--HTVAICADSQTALKLLKNPIVSNRSKHIDVVHHFARERVARNEVTFEYISTESMVADALTKPVPATKF 1330          
BLAST of mRNA_C-tenellus_contig1159.1.1 vs. uniprot
Match: A0A2P6VRK9_9CHLO (Gag-Pol poly n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VRK9_9CHLO)

HSP 1 Score: 229 bits (584), Expect = 1.980e-63
Identity = 160/509 (31.43%), Postives = 235/509 (46.17%), Query Frame = 2
Query:  476 EPKTVRSAHSSPECDLWDRARAEEMSGLLLNKVWVEAVLPLGRRAIDTKWIHISKINKFGEVVKHKARLVAKGFRQIEGLDYQDTFAPTPS------------------------PAFLSNV----------------EQTLVCYAM*EKALFVL**PPT*MIYW*------LVKLMF---------------------LIWV----------------RSRIEEQFSIEDFGDTEYYMGCEISHDRNARTVTISQTRYIKSVCHRFGMDGAKKRSVPHDLSRALDKS*NHPSVDESAPYREAVGSLMWASVMTRLDISNAVREVAKYSSNPKVTHWRVVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWNDRRSVTGGAIMFAGGAISWTSKVQRVVALSSTESEYIXXXXXXXXLLFLRSVFEFIQPQFPRHCIDLFEDNDGACKLVRNATGSTRTK*IDVRHHFLRDLSRKEEIRVVFVGTANQRADVLTKNLPVRVF 1753
            EP T++ A S P+   W  A    M+ L+ N  W     P G + I  KW++  K +  G + ++KARLV +GFRQ EG+DY + FAP                            AFL+                  + TL C     KAL+ L   P     W       L KL F                     L +V                + ++   F   D G+  +++G ++  DR A+T+ ++Q+R IK +  ++GMD AK  S P + S  L K    P   ++  Y   VGSLM+ S+ TR DI+ AV  +A++ +NP   HW   K +L YL   P +G++FG       L  + DA +AGD + RRS TG A +F GGAISW S++Q  VA S+TE+EYI         L+LR +F+ +      H + +  D+  A KL++N   S R+K IDV HHF R+   + E+   ++ T +  AD LTK +P   F
Sbjct:  125 EPTTMKEALSGPDAAAWQLA----MASLIANDTWTLCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYVSPPPGYTLGKPTLCCKL--NKALYGLKQAPR---AWYQTLKAELAKLGFTASQADAGLFISTDPSKPAYLLTYVDDILIVTPKTTSSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQ-GTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKLFQDLSLDL--HTVAICADSQTALKLLKNPIVSNRSKHIDVVHHFARERVARNEVTFEYISTESMVADALTKPVPATKF 619          
BLAST of mRNA_C-tenellus_contig1159.1.1 vs. uniprot
Match: A0A2P6UZ01_9CHLO (Gag-Pol poly n=4 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZ01_9CHLO)

HSP 1 Score: 236 bits (603), Expect = 2.410e-63
Identity = 161/509 (31.63%), Postives = 237/509 (46.56%), Query Frame = 2
Query:  476 EPKTVRSAHSSPECDLWDRARAEEMSGLLLNKVWVEAVLPLGRRAIDTKWIHISKINKFGEVVKHKARLVAKGFRQIEGLDYQDTFAPTPS------------------------PAFLSNV----------------EQTLVCYAM*EKALFVL**PPT*MIYW*------LVKLMF---------------------LIWV----------------RSRIEEQFSIEDFGDTEYYMGCEISHDRNARTVTISQTRYIKSVCHRFGMDGAKKRSVPHDLSRALDKS*NHPSVDESAPYREAVGSLMWASVMTRLDISNAVREVAKYSSNPKVTHWRVVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWNDRRSVTGGAIMFAGGAISWTSKVQRVVALSSTESEYIXXXXXXXXLLFLRSVFEFIQPQFPRHCIDLFEDNDGACKLVRNATGSTRTK*IDVRHHFLRDLSRKEEIRVVFVGTANQRADVLTKNLPVRVF 1753
            EP T++ A S P+   W  A  +EM+ L+ N  W     P G + I  KW +  K +  G + ++KARLV +GFRQ EG+DY + FAP                            AFL+                  + TL C     KAL+ L   P     W       L KL F                     L +V                + ++   F   D G+  +++G ++  DR A+T+ ++Q+R IK +  ++GMD AK  S P + S  L K    P   ++  Y   VGSLM+ S+ TR DI+ AV  +A++ +NP + HW   K +L YL   P +G++FG       L  + DA +AGD + RRS TG A +F GGAISW S++Q  VA S+TE+EYI         L+LR +F+ +      H + +  D+  A KL++N   S R+K IDV HHF R+   + E+   ++ T +  AD LTK +P   F
Sbjct:  894 EPTTMKEALSGPDAAAWQLAMDDEMASLIANDTWTLCEPPHGTKPIPAKWAYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYVSPPPGYTLGKPTLCCKL--NKALYGLKQAPR---AWYQTLKAELAKLGFTASQADAGLFISTDPSKPAYLLTYVDDILIVTPKTTSSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQ-GTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTIDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKLFQDLSLDL--HTVAICADSQTALKLLKNPIVSNRSKHIDVVHHFARERVARNEVTFEYISTESMVADALTKPVPATKF 1392          
BLAST of mRNA_C-tenellus_contig1159.1.1 vs. uniprot
Match: A0A0J7K988_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K988_LASNI)

HSP 1 Score: 235 bits (600), Expect = 4.760e-63
Identity = 168/480 (35.00%), Postives = 241/480 (50.21%), Query Frame = 2
Query:  476 EPKTVRSAHSSPECDLWDRARAEEMSGLLLNKVWVEAVLPLGRRAIDTKWIHISKINKFGEVVKHKARLVAKGFRQIEGLDYQDTFAPTP------------------------SPAFLSNVEQTLVCYAM*E------------KALFVL**PPT*MIYW*LVK-------------LMF------LIWVRSRIEEQFSIEDFGDTEYYMGCEISHDRNARTVTISQTRYIKSVCHRFGMDGAKKRSVPHDLSRALDKS*NHPSVDE---SAPYREAVGSLMWASVMTRLDISNAVREVAKYSSNPKVTHWRVVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWNDRRSVTGGAIMFAGGAISWTSKVQRVVALSSTESEYIXXXXXXXXLLFLRSVFEFIQPQFPRHCIDLFEDNDGACKLVRNATGSTRTK*IDVRHHFLRDLSRKEEIRVVFVGTANQRADVLTKNLP 1741
            EPKT   A S  +   W  A   E++ L   + WV+A LP  R+ I  +WI   K N+ G+V+++KARLVA+G+ Q EG+DY +TFAP                            AFL+   +  +   + E            ++L+ L       +Y   +              L+F      +  V   ++++F +   G  +Y++G EI    N   V I Q  Y+  V  RFGM  AK  +VP  L+  L  S N    DE   + PYREAVGSLM+A+V++R DI  AV  V+K+ SNP   HW+ VK IL Y+     VG+ +     E +L  Y+D+ YAGD + R+S +G     AGGAISW S+ Q VVA+S+TE+EYI         ++LR + + +  +  R  I L  DN GA KL+RN     RTK IDVR+HF+R+     EI + +V +  Q AD+ TK LP
Sbjct:  748 EPKTYLDAMSRDDAFKWKDAIDNELNALTKMETWVDATLPKNRKPISARWIFTRKRNRQGDVIRYKARLVARGYMQREGIDYTETFAPVVRYESVRTLLAMAAINQMKIGQFDIKTAFLNGTLEEDIYMELPEGTGNEGKIVKLQRSLYGLKHEADNCVYHGSINNEVVLLALYVDDGLLFAKSDLAINNVLKYLQKEFEVT-VGKGDYFVGLEIQRS-NEGNVKIMQKAYLTRVIDRFGMTDAKGCAVPAQLNNQLVMSLNDEK-DELMTNIPYREAVGSLMFAAVVSRPDIMFAVANVSKFLSNPSREHWQAVKTILRYVKNTLDVGIEYRKTG-ETKLIGYSDSDYAGDIDTRKSTSGIVFTLAGGAISWASRRQSVVAMSTTEAEYIAASDATKEAIWLRRLLKDVGLRQERPTI-LNVDNQGAIKLIRNPELHKRTKHIDVRYHFIREKVNGGEIEIDYVKSEEQLADIFTKALP 1222          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1159.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6UYV5_9CHLO9.260e-6833.11Gag-Pol poly (Fragment) n=1 Tax=Micractinium condu... [more]
A0A2P6UZ08_9CHLO1.040e-6733.11Gag-Pol poly (Fragment) n=1 Tax=Micractinium condu... [more]
A0A0J7KHD5_LASNI4.170e-6734.60Retrotransposon ty1-copia subclass n=1 Tax=Lasius ... [more]
A0A2P6V0U4_9CHLO3.070e-6431.37Gag-Pol poly n=1 Tax=Micractinium conductrix TaxID... [more]
A0A6H5JWK8_9PHAE6.670e-6442.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6UYV9_9CHLO8.180e-6430.36Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2P6V0G0_9CHLO1.680e-6331.63Gag-Pol poly n=1 Tax=Micractinium conductrix TaxID... [more]
A0A2P6VRK9_9CHLO1.980e-6331.43Gag-Pol poly n=2 Tax=Micractinium conductrix TaxID... [more]
A0A2P6UZ01_9CHLO2.410e-6331.63Gag-Pol poly n=4 Tax=Micractinium conductrix TaxID... [more]
A0A0J7K988_LASNI4.760e-6335.00Integrase core domain protein n=1 Tax=Lasius niger... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1159contigC-tenellus_contig1159:12799..14563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra85518
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1765
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.43e-25
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales
DescriptionGAG-pre-integrase domain
Cds size483
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.1339736-UTR-C-tenellus_contig1159:12798..129331680789185.1339736-UTR-C-tenellus_contig1159:12798..12933Choristocarpus tenellus KU2346UTRC-tenellus_contig1159 12799..12933 -
1680789185.1547241-UTR-C-tenellus_contig1159:13416..145631680789185.1547241-UTR-C-tenellus_contig1159:13416..14563Choristocarpus tenellus KU2346UTRC-tenellus_contig1159 13417..14563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.1450987-CDS-C-tenellus_contig1159:12933..134161680789185.1450987-CDS-C-tenellus_contig1159:12933..13416Choristocarpus tenellus KU2346CDSC-tenellus_contig1159 12934..13416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1159.1.1prot_C-tenellus_contig1159.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1159 12934..13416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1159.1.1

>prot_C-tenellus_contig1159.1.1 ID=prot_C-tenellus_contig1159.1.1|Name=mRNA_C-tenellus_contig1159.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=161bp
MWASVMTRLDISNAVREVAKYSSNPKVTHWRVVKCILAYLNTCPSVGLSF
GGFDTECELSAYADASYAGDWNDRRSVTGGAIMFAGGAISWTSKVQRVVA
LSSTESEYIALSSVAQELLFLRSVFEFIQPQFPRHCIDLFEDNDGACKLV
RNATGSTRTK*
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mRNA from alignment at C-tenellus_contig1159:12799..14563-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1159.1.1 ID=mRNA_C-tenellus_contig1159.1.1|Name=mRNA_C-tenellus_contig1159.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1765bp|location=Sequence derived from alignment at C-tenellus_contig1159:12799..14563- (Choristocarpus tenellus KU2346)
ATGACAACCCTGGATACATCCTTCCTCCCCATGCGCGACGAAGGGCTACT GACAATTTGGACGACACTCCTAGATACATCCTCCACATGCTAGAAAACAG ACTAGAGAAATCCAGGAGATGGGGGGTGAATGTGACGATAATGGGATCAC CTGGATTGAAGGTGGACTAAGTGATGGTGAACTAGTGGAGGAGATGGTGG AAAACATTTTTAATGACGAAAATGATGGTGATGACAATGGAATGGATCAA ACCCAGGACAATCAATGTGAAAGGGAACTACGACGACTCAGCATTGGAAA TGGTGAAGACAAAATCCTACCCCATCGCACCAGATCAGGCAATACTTCCG CCGAAGCTGCTGTTTTTAATATGTCCAATTTTTTCTAGACTTGTTTGTCT GTTTCAATAGAGACTACCCTTGTAATGTGTGTGAGTGATGATTCCATCAG AGTGTTAGCTAATGAACTCCCTCCAGAACCTAAGACTGTAAGATCAGCAC ATAGCTCTCCCGAATGTGATTTATGGGATCGAGCTAGAGCTGAAGAGATG TCTGGTTTGTTGTTGAATAAGGTTTGGGTAGAGGCTGTACTACCCCTTGG ACGCAGAGCTATAGACACGAAATGGATTCACATAAGTAAAATCAACAAAT TTGGCGAGGTGGTTAAACACAAGGCGCGTTTGGTAGCAAAAGGTTTTCGA CAGATTGAGGGTTTAGATTATCAAGATACCTTTGCACCAACACCGTCCCC TGCATTTTTGAGCAATGTAGAGCAGACCCTTGTGTGTTACGCTATGTAAG AGAAGGCATTGTTTGTGCTGTGATAGCCCCCCACGTAGATGATCTATTGG TAGCTGGTAAAATTAATGTTTTTGATTTGGGTTCGCTCTAGGATTGAAGA GCAGTTTTCCATAGAAGATTTTGGTGATACTGAGTATTATATGGGTTGTG AGATTTCACATGACAGAAATGCACGTACTGTTACCATCAGTCAGACTAGG TATATTAAGAGTGTTTGTCATAGATTTGGTATGGATGGGGCAAAGAAAAG GTCGGTACCCCATGATCTCTCAAGGGCTCTAGACAAAAGTTAGAATCATC CAAGTGTTGATGAAAGTGCACCGTACAGAGAGGCAGTTGGTAGTTTGATG TGGGCATCTGTTATGACCAGACTTGATATTTCAAATGCAGTTCGTGAAGT TGCCAAGTACAGTAGCAATCCCAAAGTCACTCATTGGCGTGTAGTGAAAT GTATTTTAGCATATTTGAATACATGTCCCAGTGTTGGATTGAGTTTTGGT GGTTTTGATACTGAGTGTGAGTTGAGTGCGTATGCTGATGCTAGTTATGC TGGAGACTGGAATGATCGTAGGTCAGTGACTGGAGGAGCAATTATGTTTG CAGGAGGAGCAATATCTTGGACGTCAAAGGTGCAAAGAGTTGTAGCTCTG TCTTCCACAGAGAGTGAATACATAGCACTTAGTAGTGTAGCACAGGAATT ACTTTTCTTGAGGAGTGTTTTTGAGTTTATTCAGCCACAGTTTCCTAGGC ATTGCATTGATTTGTTTGAGGATAATGATGGTGCATGCAAACTAGTACGA AATGCCACAGGCTCTACTAGAACAAAGTAAATAGATGTCCGACATCATTT TTTAAGGGATTTATCTAGAAAAGAAGAGATTCGTGTTGTTTTTGTTGGTA CAGCAAACCAGAGGGCAGATGTCTTGACCAAGAATTTGCCAGTTCGAGTT TTTAGACAACATGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig1159:12799..14563-

>mRNA_C-tenellus_contig1159.1.1 ID=mRNA_C-tenellus_contig1159.1.1|Name=mRNA_C-tenellus_contig1159.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=483bp|location=Sequence derived from alignment at C-tenellus_contig1159:12799..14563- (Choristocarpus tenellus KU2346)
ATGTGGGCATCTGTTATGACCAGACTTGATATTTCAAATGCAGTTCGTGA
AGTTGCCAAGTACAGTAGCAATCCCAAAGTCACTCATTGGCGTGTAGTGA
AATGTATTTTAGCATATTTGAATACATGTCCCAGTGTTGGATTGAGTTTT
GGTGGTTTTGATACTGAGTGTGAGTTGAGTGCGTATGCTGATGCTAGTTA
TGCTGGAGACTGGAATGATCGTAGGTCAGTGACTGGAGGAGCAATTATGT
TTGCAGGAGGAGCAATATCTTGGACGTCAAAGGTGCAAAGAGTTGTAGCT
CTGTCTTCCACAGAGAGTGAATACATAGCACTTAGTAGTGTAGCACAGGA
ATTACTTTTCTTGAGGAGTGTTTTTGAGTTTATTCAGCCACAGTTTCCTA
GGCATTGCATTGATTTGTTTGAGGATAATGATGGTGCATGCAAACTAGTA
CGAAATGCCACAGGCTCTACTAGAACAAAGTAA
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