mRNA_C-tenellus_contig11586.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11586.2.1
Unique NamemRNA_C-tenellus_contig11586.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11586.2.1 vs. uniprot
Match: A0A6H5JKV4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKV4_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 1.560e-74
Identity = 111/172 (64.53%), Postives = 130/172 (75.58%), Query Frame = 1
Query:   58 EEPGFGLGLPGLXXXXXXXXXXXXXPLNFAMAKQVSDGIYRSGFPIACNFVFVRGLHLRSILCLCPDSVPQGSFEWAKNEGINMMLFDLGVNREPFASMSTKSMRVVMDFIADARNRPILVHCLDGKTQTGCAVGCLRRRQGWSLGAIFDEYMRFAGPRAKALDMQFIELFE 573
            EEPG+GLGLPGL             PLNF+M   VS G++RSG+PIACNF F+R L L+SILCLCP+SV  GS EWAK  G++M + DLG N  PF SM   +MR  +D+++D RNRP+LVHCL GKTQTGCA+GCLRRRQ W+LGAIFDEY RFAGP AK LDMQFIELFE
Sbjct:   42 EEPGYGLGLPGLASLTLPSDGMVVPPLNFSM---VSVGVFRSGYPIACNFPFLRRLGLQSILCLCPESVLPGSLEWAKESGVSMEMCDLGENSPPFVSMPLAAMRKAVDYLSDCRNRPVLVHCLTGKTQTGCAIGCLRRRQNWALGAIFDEYTRFAGPSAKPLDMQFIELFE 210          
BLAST of mRNA_C-tenellus_contig11586.2.1 vs. uniprot
Match: A0A835YPN6_9STRA (Tyrosine phosphatase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN6_9STRA)

HSP 1 Score: 192 bits (488), Expect = 6.490e-59
Identity = 92/167 (55.09%), Postives = 117/167 (70.06%), Query Frame = 1
Query:   73 GLGLPGLXXXXXXXXXXXXXPLNFAMAKQVSDGIYRSGFPIACNFVFVRGLHLRSILCLCPDSVPQGSFEWAKNEGINMMLFDLGVNREPFASMSTKSMRVVMDFIADARNRPILVHCLDGKTQTGCAVGCLRRRQGWSLGAIFDEYMRFAGPRAKALDMQFIELFE 573
            GLGL GL             PLN+AM   VS G+YRSG+PIACNF F++GL LR++LCLCP+S  +GS EWAK+ G  + L  +  N+EPF  M  +++   +D IAD ++RPILVHCL GK++TGC VGCLRR QGWSL AIFDEY+RF+      LDMQFIEL++
Sbjct:   36 GLGLEGLASPSLPKQGMLIPPLNWAM---VSPGVYRSGYPIACNFNFLKGLRLRTVLCLCPESCRRGSLEWAKSSGAALHLVSVSDNKEPFVWMDEQAVAQALDLIADPKSRPILVHCLTGKSRTGCVVGCLRRLQGWSLAAIFDEYLRFSAGSGSLLDMQFIELWD 199          
BLAST of mRNA_C-tenellus_contig11586.2.1 vs. uniprot
Match: A0A445DJR6_ARAHY (Tyrosine-protein phosphatase domain-containing protein n=3 Tax=Arachis TaxID=3817 RepID=A0A445DJR6_ARAHY)

HSP 1 Score: 157 bits (396), Expect = 3.150e-45
Identity = 70/147 (47.62%), Postives = 100/147 (68.03%), Query Frame = 1
Query:  133 PLNFAMAKQVSDGIYRSGFPIACNFVFVRGLHLRSILCLCPDSVPQGSFEWAKNEGINMMLFDLGVNREPFASMSTKSMRVVMDFIADARNRPILVHCLDGKTQTGCAVGCLRRRQGWSLGAIFDEYMRFAGPRAKALDMQFIELFE 573
            PLNFA+   V +GI+RSGFP   NF F++ LHLRS++CLCP+  P+ + E+ K+ GI +  F +   +EPF ++   ++R  +  + D RN P+L+HC  GK +TGC VGCLRR Q W L ++FDEY RFA  +A+  D +FIELF+
Sbjct:   32 PLNFAV---VDNGIFRSGFPEPANFGFLKSLHLRSVICLCPEPYPEPNSEFLKSHGIRLFQFGIDGCKEPFVNIPEDTIREALKVVLDVRNHPVLIHCKRGKHRTGCLVGCLRRLQRWCLSSVFDEYQRFAAAKARVSDQRFIELFD 175          
BLAST of mRNA_C-tenellus_contig11586.2.1 vs. uniprot
Match: A0A8J5WTL0_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WTL0_ZIZPA)

HSP 1 Score: 154 bits (390), Expect = 5.610e-44
Identity = 70/147 (47.62%), Postives = 101/147 (68.71%), Query Frame = 1
Query:  133 PLNFAMAKQVSDGIYRSGFPIACNFVFVRGLHLRSILCLCPDSVPQGSFEWAKNEGINMMLFDLGVNREPFASMSTKSMRVVMDFIADARNRPILVHCLDGKTQTGCAVGCLRRRQGWSLGAIFDEYMRFAGPRAKALDMQFIELFE 573
            PLNFAM   V DGI+RSGFP A NF F++ L+LRSI+ LCP+  P+ + E+    GI +  F +   +EPF ++  + +R V+  + D RN+P+L+HC  GK +TGC VGCLR+ Q W L ++FDEY RFA  +A++ D +F+ELF+
Sbjct:   63 PLNFAM---VDDGIFRSGFPAAANFRFLKSLNLRSIVYLCPEPYPETNTEFLAKNGIKLHQFGIEGRKEPFVNIPDEKIREVLKVVLDERNQPLLIHCKRGKHRTGCVVGCLRKLQNWCLSSVFDEYQRFAAAKARSTDQRFMELFD 206          
BLAST of mRNA_C-tenellus_contig11586.2.1 vs. uniprot
Match: A0A834SEY3_9FABA (Putative tyrosine-protein phosphatase DSP4 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834SEY3_9FABA)

HSP 1 Score: 153 bits (386), Expect = 1.050e-43
Identity = 71/147 (48.30%), Postives = 98/147 (66.67%), Query Frame = 1
Query:  133 PLNFAMAKQVSDGIYRSGFPIACNFVFVRGLHLRSILCLCPDSVPQGSFEWAKNEGINMMLFDLGVNREPFASMSTKSMRVVMDFIADARNRPILVHCLDGKTQTGCAVGCLRRRQGWSLGAIFDEYMRFAGPRAKALDMQFIELFE 573
            PLNFAM   V +GI+RSGFP A NF F++ L LRS++ LCP+  P+ + E+ K  GI +  F +   +EPF ++   ++R  +  + D RN P+L+HC  GK +TGC VGCLRR Q W L +IFDEY RFA  +A+  D +FIELF+
Sbjct:   33 PLNFAM---VDNGIFRSGFPEAANFGFLKSLRLRSVIYLCPEPYPEANSEFLKANGIRLYQFGIDGCKEPFVNIPDDTIREALKVVLDVRNHPVLIHCKRGKHRTGCLVGCLRRMQRWCLSSIFDEYQRFAAAKARVSDQRFIELFD 176          
BLAST of mRNA_C-tenellus_contig11586.2.1 vs. uniprot
Match: A0A6V7NWS2_ANACO (Tyrosine-protein phosphatase domain-containing protein n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6V7NWS2_ANACO)

HSP 1 Score: 153 bits (387), Expect = 2.970e-43
Identity = 72/147 (48.98%), Postives = 97/147 (65.99%), Query Frame = 1
Query:  133 PLNFAMAKQVSDGIYRSGFPIACNFVFVRGLHLRSILCLCPDSVPQGSFEWAKNEGINMMLFDLGVNREPFASMSTKSMRVVMDFIADARNRPILVHCLDGKTQTGCAVGCLRRRQGWSLGAIFDEYMRFAGPRAKALDMQFIELFE 573
            PLNFAM   V  G++RSGFP A NF F+R L LRS+LCLCP+  P+ + E+    GI +  F +   +EPF ++   ++R  +  + D RN PIL+HC  GK +TGC VGCLR+ Q W L +IFDEY RFA  +A+  D +FIELF+
Sbjct:   84 PLNFAM---VDHGVFRSGFPDAANFGFLRTLDLRSLLCLCPEPYPEANMEFLHANGIRLFQFGIDGCKEPFVNIPEDTIREALKVVLDVRNHPILIHCKRGKHRTGCLVGCLRKLQRWCLSSIFDEYRRFAAAKARISDQRFIELFD 227          
BLAST of mRNA_C-tenellus_contig11586.2.1 vs. uniprot
Match: A0A0E0HMK5_ORYNI (Tyrosine-protein phosphatase domain-containing protein n=14 Tax=Oryzeae TaxID=147380 RepID=A0A0E0HMK5_ORYNI)

HSP 1 Score: 152 bits (383), Expect = 8.010e-43
Identity = 69/147 (46.94%), Postives = 99/147 (67.35%), Query Frame = 1
Query:  133 PLNFAMAKQVSDGIYRSGFPIACNFVFVRGLHLRSILCLCPDSVPQGSFEWAKNEGINMMLFDLGVNREPFASMSTKSMRVVMDFIADARNRPILVHCLDGKTQTGCAVGCLRRRQGWSLGAIFDEYMRFAGPRAKALDMQFIELFE 573
            PLNFAM   V DGI+RSGFP A NF F++ L+LRSI+ LCP+  P+ + E+    GI +  F +   +EPF ++    +R  +  + D RN+P+L+HC  GK +TGC VGCLR+ Q W L ++FDEY RFA  +A++ D +F+ELF+
Sbjct:   71 PLNFAM---VDDGIFRSGFPAAANFRFLKSLNLRSIVYLCPEPYPETNAEFLAKNGIKLHQFGIEGRKEPFVNIPDDKIREALKVVLDVRNQPLLIHCKRGKHRTGCVVGCLRKLQKWCLSSVFDEYQRFAAAKARSTDQRFMELFD 214          
BLAST of mRNA_C-tenellus_contig11586.2.1 vs. uniprot
Match: UPI00162E4688 (probable tyrosine-protein phosphatase DSP4 n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=UPI00162E4688)

HSP 1 Score: 153 bits (387), Expect = 9.450e-43
Identity = 73/149 (48.99%), Postives = 100/149 (67.11%), Query Frame = 1
Query:  133 PLNFAMAKQVSDGIYRSGFPIACNFVFVRGLHLRSILCLCPDSVPQGSFEWAKNEGINMMLFDLGVN--REPFASMSTKSMRVVMDFIADARNRPILVHCLDGKTQTGCAVGCLRRRQGWSLGAIFDEYMRFAGPRAKALDMQFIELFE 573
            PLNFAM   V  G+YRSGFP A N  F+  LHLRS+LCLCP+  P+ + E+ +  GI   LF LG++  +EPF ++    +R  +  + D RN P+L+HC  GK +TGC VGCLR+ Q W L ++FDEY RFA  +A+  D++FIELF+
Sbjct:  127 PLNFAM---VDHGVYRSGFPDASNLPFLETLHLRSVLCLCPEPYPEANQEFLRAHGIR--LFQLGIDGSKEPFVNIPEDRIREALKVVLDTRNHPVLIHCKRGKHRTGCVVGCLRKLQRWCLTSVFDEYQRFAAAKARVSDLRFIELFD 270          
BLAST of mRNA_C-tenellus_contig11586.2.1 vs. uniprot
Match: A0A5J9V086_9POAL (Tyrosine-protein phosphatase domain-containing protein n=3 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9V086_9POAL)

HSP 1 Score: 150 bits (378), Expect = 2.480e-42
Identity = 69/147 (46.94%), Postives = 99/147 (67.35%), Query Frame = 1
Query:  133 PLNFAMAKQVSDGIYRSGFPIACNFVFVRGLHLRSILCLCPDSVPQGSFEWAKNEGINMMLFDLGVNREPFASMSTKSMRVVMDFIADARNRPILVHCLDGKTQTGCAVGCLRRRQGWSLGAIFDEYMRFAGPRAKALDMQFIELFE 573
            PLNFAM   V DGI+RSGFP A NF F+R L+LRSI+ LCP+  P+ +  + +  GI +  F +   +EPF  +  + +R  +  I D RN+P+L+HC  GK +TGC VGCLR+ Q W L ++FDEY+ FA  +A++ D +F+ELF+
Sbjct:   50 PLNFAM---VDDGIFRSGFPDAANFRFLRSLNLRSIVYLCPEPYPEENARFLEQNGIELHQFGIEGRKEPFVYIPEERIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKLQKWCLSSVFDEYLHFAAAKARSTDQRFMELFD 193          
BLAST of mRNA_C-tenellus_contig11586.2.1 vs. uniprot
Match: A0A4S8I9S6_MUSBA (Tyrosine-protein phosphatase domain-containing protein n=2 Tax=Musa TaxID=4640 RepID=A0A4S8I9S6_MUSBA)

HSP 1 Score: 152 bits (383), Expect = 2.540e-42
Identity = 70/147 (47.62%), Postives = 97/147 (65.99%), Query Frame = 1
Query:  133 PLNFAMAKQVSDGIYRSGFPIACNFVFVRGLHLRSILCLCPDSVPQGSFEWAKNEGINMMLFDLGVNREPFASMSTKSMRVVMDFIADARNRPILVHCLDGKTQTGCAVGCLRRRQGWSLGAIFDEYMRFAGPRAKALDMQFIELFE 573
            PLNFAM   V  G++RSGFP A NF F+R LHLRSILCLCP+  P  + ++ +  GI +  F +   +EPFA++   ++R  ++ + D RN P+L+HC  GK +TGC VGCLR+ Q W L +IFDEY  FA  +A+  D  F+E F+
Sbjct:  112 PLNFAM---VDYGVFRSGFPDAANFGFLRALHLRSILCLCPEPYPDANVDFLRANGIRLFQFGIDGYKEPFANIPEDTIREALEVVLDIRNHPLLIHCNRGKHRTGCVVGCLRKLQRWCLASIFDEYRCFAAAKARVSDQMFMEQFD 255          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11586.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKV4_9PHAE1.560e-7464.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPN6_9STRA6.490e-5955.09Tyrosine phosphatase family-domain-containing prot... [more]
A0A445DJR6_ARAHY3.150e-4547.62Tyrosine-protein phosphatase domain-containing pro... [more]
A0A8J5WTL0_ZIZPA5.610e-4447.62Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A834SEY3_9FABA1.050e-4348.30Putative tyrosine-protein phosphatase DSP4 n=1 Tax... [more]
A0A6V7NWS2_ANACO2.970e-4348.98Tyrosine-protein phosphatase domain-containing pro... [more]
A0A0E0HMK5_ORYNI8.010e-4346.94Tyrosine-protein phosphatase domain-containing pro... [more]
UPI00162E46889.450e-4348.99probable tyrosine-protein phosphatase DSP4 n=1 Tax... [more]
A0A5J9V086_9POAL2.480e-4246.94Tyrosine-protein phosphatase domain-containing pro... [more]
A0A4S8I9S6_MUSBA2.540e-4247.62Tyrosine-protein phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11586contigC-tenellus_contig11586:2969..3961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FKK3
PFAMsY_phosphatase2
Model size576
Max annot lvl2759|Eukaryota
KEGG koko:K18045
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.76e-76
EggNOG OGsCOG2365@1|root,KOG1572@2759|Eukaryota
Ec32 ortholog descriptionProtein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic
Ec32 orthologEc-12_001770.1
EC3.1.3.48
Descriptionprotein tyrosine phosphatase activity
Cds size576
COG categoryT
BRITEko00000,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.9328446-CDS-C-tenellus_contig11586:2968..31221680789184.9328446-CDS-C-tenellus_contig11586:2968..3122Choristocarpus tenellus KU2346CDSC-tenellus_contig11586 2969..3122 +
1680789184.9454606-CDS-C-tenellus_contig11586:3299..35391680789184.9454606-CDS-C-tenellus_contig11586:3299..3539Choristocarpus tenellus KU2346CDSC-tenellus_contig11586 3300..3539 +
1680789184.958657-CDS-C-tenellus_contig11586:3779..39611680789184.958657-CDS-C-tenellus_contig11586:3779..3961Choristocarpus tenellus KU2346CDSC-tenellus_contig11586 3780..3961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11586.2.1prot_C-tenellus_contig11586.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11586 2969..3961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11586.2.1

>prot_C-tenellus_contig11586.2.1 ID=prot_C-tenellus_contig11586.2.1|Name=mRNA_C-tenellus_contig11586.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=192bp
ISPQAKEDPHSREGGEENGEEPGFGLGLPGLASPSLASPSMVAPPLNFAM
AKQVSDGIYRSGFPIACNFVFVRGLHLRSILCLCPDSVPQGSFEWAKNEG
INMMLFDLGVNREPFASMSTKSMRVVMDFIADARNRPILVHCLDGKTQTG
CAVGCLRRRQGWSLGAIFDEYMRFAGPRAKALDMQFIELFE*
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mRNA from alignment at C-tenellus_contig11586:2969..3961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11586.2.1 ID=mRNA_C-tenellus_contig11586.2.1|Name=mRNA_C-tenellus_contig11586.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=993bp|location=Sequence derived from alignment at C-tenellus_contig11586:2969..3961+ (Choristocarpus tenellus KU2346)
ATCTCTCCACAAGCGAAGGAGGACCCTCACTCTCGCGAGGGTGGAGAAGA GAATGGAGAAGAGCCAGGATTTGGACTGGGCCTCCCTGGGTTGGCATCAC CAAGCTTGGCATCACCAAGCATGGTCGCACCCCCTCTAAACTTCGCCATG GCGAGTTACAGTTTTGGTTTTAGGAGAAGCAATCTCCGTTGTGAACGGAA AGGCTCGTCAATCTTGAACGACGAACTATAGATTTCCCCTCGCTGCCCTC CAGAGGTGACGTCGAGAATATATTCTCTCACTCTCGCTCTTCACTTGGAT CTCCAATCCGATTTCTTTGTTCACGGGCAAGAGCAGGTTTCTGATGGGAT ATATCGCTCAGGCTTCCCAATCGCTTGCAACTTTGTCTTCGTTCGAGGGT TGCATCTGCGGAGTATATTGTGCCTATGTCCAGATAGTGTCCCACAGGGA TCGTTCGAGTGGGCTAAGAATGAGGGGATCAACATGATGCTTTTTGACCT CGGGGTGAACAGGGAACCCTTCGCCTCTATGTCCACTAAGTCGATGCGAG TGGTTATGGACTTCATTGCCGGTGGGTGTGGTTCATGAGATTGGCCATTC TGTCCATCCCTGTGACATGCATAAATGCATGAGTTGGTAGTGTGCCTGGA GATAATAGGAATGCCTTTCTCCGCAAAGCTGGCCGTCCTTCTCTCTCCAT CAGTGATGGACTACGACTTTCTAGTCCACTGCTACCAAAAGTCATGAAGT TCTAACGTGTGCAATGGCGGTCAATGTGCTGCTCCCATCCCACGTGCATG TATTCTTACAGATGCTCGCAACCGACCAATCCTGGTTCATTGCCTAGATG GGAAGACCCAGACGGGGTGCGCTGTGGGATGCCTCCGACGACGTCAGGGT TGGTCACTCGGTGCCATCTTTGATGAATACATGCGCTTTGCCGGGCCTCG CGCAAAAGCCTTAGACATGCAATTCATCGAACTTTTTGAATAG
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Coding sequence (CDS) from alignment at C-tenellus_contig11586:2969..3961+

>mRNA_C-tenellus_contig11586.2.1 ID=mRNA_C-tenellus_contig11586.2.1|Name=mRNA_C-tenellus_contig11586.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=576bp|location=Sequence derived from alignment at C-tenellus_contig11586:2969..3961+ (Choristocarpus tenellus KU2346)
ATCTCTCCACAAGCGAAGGAGGACCCTCACTCTCGCGAGGGTGGAGAAGA
GAATGGAGAAGAGCCAGGATTTGGACTGGGCCTCCCTGGGTTGGCATCAC
CAAGCTTGGCATCACCAAGCATGGTCGCACCCCCTCTAAACTTCGCCATG
GCGAAGCAGGTTTCTGATGGGATATATCGCTCAGGCTTCCCAATCGCTTG
CAACTTTGTCTTCGTTCGAGGGTTGCATCTGCGGAGTATATTGTGCCTAT
GTCCAGATAGTGTCCCACAGGGATCGTTCGAGTGGGCTAAGAATGAGGGG
ATCAACATGATGCTTTTTGACCTCGGGGTGAACAGGGAACCCTTCGCCTC
TATGTCCACTAAGTCGATGCGAGTGGTTATGGACTTCATTGCCGATGCTC
GCAACCGACCAATCCTGGTTCATTGCCTAGATGGGAAGACCCAGACGGGG
TGCGCTGTGGGATGCCTCCGACGACGTCAGGGTTGGTCACTCGGTGCCAT
CTTTGATGAATACATGCGCTTTGCCGGGCCTCGCGCAAAAGCCTTAGACA
TGCAATTCATCGAACTTTTTGAATAG
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