mRNA_C-tenellus_contig11581.1.3 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11581.1.3
Unique NamemRNA_C-tenellus_contig11581.1.3
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11581.1.3 vs. uniprot
Match: D8LBW4_ECTSI (TsaA-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBW4_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 1.600e-87
Identity = 150/280 (53.57%), Postives = 194/280 (69.29%), Query Frame = 2
Query:  176 AERRLRSSKKEHEQAHGFIFRAIGDVRSPFPDRRGTPRQGSITPHARGKVVLYPRAVGYPALEGLDKFSHIWLIFVFHENTNANVNGVI----TAELGSNETKKDTSLCDSEVK------STETVQVEHRSRPTRGGYN-----------TFLAKVSPPRLNGKKVGVLGTRSPHRPNPIGLTMVKLESVDMKTNSLTVTGIDLIDGTPVIDVKPVIPYDTPSSLMVPDWVYEDLVLRRVVFSEEASTGVQACLDNLGRKRKINFYNDAQGFKEAVTEVI 952
            AERRLR+ K+E E+  G+ F AIG + +PF DRRGTPRQGSITP +RGKV L    VGYPAL G+  FSHIWL+FVFH+NTNA VNGV      A + ++   ++ +  + +V       STE V+V+ +     GG             TFL KV PPRL GK++GVLGTRSPHRPNP+GLTMVKL+ VD+KTNS+TV+G+DL+DGTP+ID+KPV+P+D P ++ VP+WV +D  LRRVVF+EEA  G+  C+    RK K  FY D + FK AV+EV+
Sbjct:   83 AERRLRAEKQEMEEEDGYNFTAIGTISTPFRDRRGTPRQGSITPLSRGKVTLDRGIVGYPALIGMTDFSHIWLVFVFHDNTNATVNGVAEERPAAAVAASAAGEEGAQGEGKVAPAKATGSTEGVRVKGQLERWGGGAREYRRPRHKLRQTFLTKVCPPRL-GKRIGVLGTRSPHRPNPLGLTMVKLDGVDLKTNSITVSGVDLVDGTPIIDIKPVVPHDVPRNMRVPEWVEDDPCLRRVVFTEEACEGLSKCVGEEARKSKSKFYGDIESFKAAVSEVL 361          
BLAST of mRNA_C-tenellus_contig11581.1.3 vs. uniprot
Match: A0A6H5KWP5_9PHAE (TsaA-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP5_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.630e-59
Identity = 112/218 (51.38%), Postives = 140/218 (64.22%), Query Frame = 2
Query:  377 FSHIWLIFVFHENTNANVNGVITA---------------ELGSNETKKDTSLCDSEVKSTETVQVEHRSRPTRGGYN-----------TFLAKVSPPRLNGKKVGVLGTRSPHRPNPIGLTMVKLESVDMKTNSLTVTGIDLIDGTPVIDVKPVIPYDTPSSLMVPDWVYEDLVLRRVVFSEEASTGVQACLDNLGRKRKINFYNDAQGFKEAVTEVI 952
            FSHIWL+FVFH+NTNA VNGV                  E G  E K   +       STE V+V+ +     GG             TFL KV PPRL GK++GVLGTRSPHRPNP+GLTMVKL+ VD+KTNS+TV+GIDL+DGTP+ID+KPV+P+D P ++ VP+WV +D  LRRVVF+EEA  G+  C+    RK K  FY D + FK AV+EV+
Sbjct:    4 FSHIWLVFVFHDNTNATVNGVAEERPAASAXXXXXXXXEEGGQGERKGAPATA---TGSTEGVRVKGQLERWGGGAREYRRPRHKLRQTFLTKVCPPRL-GKRIGVLGTRSPHRPNPLGLTMVKLDGVDLKTNSITVSGIDLVDGTPIIDIKPVVPHDVPRNMRVPEWVEDDPCLRRVVFTEEACKGLSTCVGEEARKSKSKFYGDIESFKAAVSEVL 217          
BLAST of mRNA_C-tenellus_contig11581.1.3 vs. uniprot
Match: A0A835YKX6_9STRA (TsaA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX6_9STRA)

HSP 1 Score: 197 bits (501), Expect = 5.420e-57
Identity = 115/243 (47.33%), Postives = 145/243 (59.67%), Query Frame = 2
Query:  227 FIFRAIGDVRSPFPDRRGTPRQGSITPHARGKVVLYPRAVGYPALEGLDKFSHIWLIFVFHENTNANVNGVITAELGSNETKKDTSLCDSEVKSTETVQVEHRSRPTRGGYNTFLAKVSPPRLNGKKVGVLGTRSPHRPNPIGLTMVKLESVDMKTNSLTVTGIDLIDGTPVIDVKPVIPYDTPSSLMVPDWVYE-DLVLRRVVFSEEASTGVQACLDNLGRKRKINFYNDAQGFKEAVTEVI 952
            F F ++  V++PF DRRGTPRQGS+ P +RG VV +P  V   AL+ L +FSH W++FVFHENTNA   G+        E KK                     RPT     TF AK+SPPRL G KVGV  TRSPHRPNPIGLTMV++  V  + + L V+G+DL+DGTPV+DVKPV+PYD P  L VP+WV E D   RRV +S  A   + A  +  G  R   FY++ Q   EA  +V+
Sbjct:   32 FNFVSVATVQTPFRDRRGTPRQGSVAPLSRGTVVFHPHIVSPAALDNLQQFSHAWVLFVFHENTNAR--GL--------EGKKGA------------------GRPT-----TFRAKISPPRLGGPKVGVFSTRSPHRPNPIGLTMVRILGV--QGHHLHVSGLDLVDGTPVLDVKPVVPYDVPDGLAVPEWVLEGDKERRRVTWSRAAQLALHALFERRGA-RASRFYDNPQALSEAAAQVL 238          
BLAST of mRNA_C-tenellus_contig11581.1.3 vs. uniprot
Match: K3X2B7_GLOUD (TsaA-like domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2B7_GLOUD)

HSP 1 Score: 182 bits (461), Expect = 1.600e-50
Identity = 103/267 (38.58%), Postives = 158/267 (59.18%), Query Frame = 2
Query:  158 RKGRTEAERRLRSSKKEHEQAHGFIFRAIGDVRSPFPDRRGTPRQGSITPHARGKVVLYPRAVGYPALEGLDKFSHIWLIFVFHENTNANVNGVITAELGSNETKKDTSLCDSEVKSTETVQVEHRSRPTRGGYNTFLAKVSPPRLNGKKVGVLGTRSPHRPNPIGLTMVKLESVDMKTNSLTVTGIDLIDGTPVIDVKPVIPYDTPSSLMVPDWVYE--DLVLRRVVFSEEASTGVQACLDNLGRKRKINFYNDAQGFKEAVTEVI 952
            R GRT AER  R + + H++ HG+ F AIG V S F +RRGTPRQG++ P AR ++  +  ++   +LEGL++F+H+W+IFVFHENTN      +     S+  KK T                           TF AK++PPRL GKKVG+  TR+PHRPN IGLT+VK+++V  +   + ++G DL+ GTPV+DVKP +P D  +  + P+WV E  D+++R V FS+EA+  +   ++    +++  FY      + A+ +++
Sbjct:   59 RSGRTNAERDAREAIQRHQELHGYTFDAIGAVESCFAERRGTPRQGALVPDARARIA-FRTSIPPASLEGLEQFTHLWVIFVFHENTN------VAKASSSSGAKKTT---------------------------TFPAKIAPPRLGGKKVGLFSTRTPHRPNSIGLTVVKIDAVHERY--IDISGHDLVHGTPVLDVKPYVPADCVADHVCPEWVSEKSDVLVRIVEFSDEATQALATMIE----RQQSTFYKSVDDIQAAIKQML 285          
BLAST of mRNA_C-tenellus_contig11581.1.3 vs. uniprot
Match: A0A2D4BFG7_PYTIN (TsaA-like domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFG7_PYTIN)

HSP 1 Score: 179 bits (454), Expect = 1.730e-49
Identity = 107/267 (40.07%), Postives = 150/267 (56.18%), Query Frame = 2
Query:  158 RKGRTEAERRLRSSKKEHEQAHGFIFRAIGDVRSPFPDRRGTPRQGSITPHARGKVVLYPRAVGYPALEGLDKFSHIWLIFVFHENTNANVNGVITAELGSNETKKDTSLCDSEVKSTETVQVEHRSRPTRGGYNTFLAKVSPPRLNGKKVGVLGTRSPHRPNPIGLTMVKLESVDMKTNSLTVTGIDLIDGTPVIDVKPVIPYDTPSSLMVPDWVYE--DLVLRRVVFSEEASTGVQACLDNLGRKRKINFYNDAQGFKEAVTEVI 952
            R GRT AER  R + +  ++A G+ F +IG V+S F +RRGTPRQ ++ P ARG++ L P  +   ALE LD+FSH+W++FVFHENTN                          VK T              G N F AK++PPRL G+KVG+  TR+PHRPN IGLT+VK+E+V  K   + ++G DL++GTPV+DVKP +P D   + + P WV +  D + R V FSE A    QA L  +  + +  FY        A+ +++
Sbjct:   62 RSGRTNAEREAREAVQRQQEADGYQFHSIGHVQSCFAERRGTPRQSALVPDARGRIKLRPH-IPPAALECLDQFSHMWVVFVFHENTNV-------------------------VKQT--------------GKNKFAAKIAPPRLGGQKVGLFSTRTPHRPNSIGLTVVKIEAVYGKY--IEISGHDLVNGTPVLDVKPYVPMDMVPNHVCPHWVTDPSDALPRPVEFSESA----QAALHEMSERGQFRFYTSLDDIVAAIKQML 282          
BLAST of mRNA_C-tenellus_contig11581.1.3 vs. uniprot
Match: T0PS40_SAPDV (TsaA-like domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0PS40_SAPDV)

HSP 1 Score: 179 bits (453), Expect = 1.860e-49
Identity = 101/267 (37.83%), Postives = 152/267 (56.93%), Query Frame = 2
Query:  158 RKGRTEAERRLRSSKKEHEQAHGFIFRAIGDVRSPFPDRRGTPRQGSITPHARGKVVLYPRAVGYPALEGLDKFSHIWLIFVFHENTNANVNGVITAELGSNETKKDTSLCDSEVKSTETVQVEHRSRPTRGGYNTFLAKVSPPRLNGKKVGVLGTRSPHRPNPIGLTMVKLESVDMKTNSLTVTGIDLIDGTPVIDVKPVIPYDTPSSLMVPDWVYE--DLVLRRVVFSEEASTGVQACLDNLGRKRKINFYNDAQGFKEAVTEVI 952
            R GRT AER  R   ++     G+ F  IG V S F DRRGTPRQG++ P ++G++ L   +V   +LE LD+FSH+W++FVFHENTN                                      S+       T+ AK++PPRL GKKVG+  TR+PHRPN IGLT+VKL++V  +T  + ++G D + GTP++DVKP +PYD    L  P+WV E  D++ R V F++EA   ++A +++    +++ FY+     K+A+ +++
Sbjct:   55 RLGRTNAERDARLIAQQQLDRDGYNFEPIGSVESCFADRRGTPRQGALVPASKGRIRLVT-SVPPASLECLDQFSHVWVLFVFHENTNV-------------------------------------SKVAANKKTTYPAKIAPPRLGGKKVGLFSTRTPHRPNSIGLTVVKLDAVYDRT--IEISGHDFVHGTPILDVKPYVPYDRVDDLECPEWVMERHDILPRPVEFADEALAQLEAAINS----KRLEFYHSVDELKDAIAQIL 277          
BLAST of mRNA_C-tenellus_contig11581.1.3 vs. uniprot
Match: A0A7S2WIR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIR7_9STRA)

HSP 1 Score: 176 bits (447), Expect = 6.030e-49
Identity = 102/222 (45.95%), Postives = 128/222 (57.66%), Query Frame = 2
Query:  158 RKGRTEAERRLRSSKKEHEQAHGFIFRAIGDVRSPFPDRRGTPRQGSITPHARGKVVLYPRAVGYPALEGLDKFSHIWLIFVFHENTNANVNGVITAELGSNETKKDTSLCDSEVKSTETVQVEHRSRPTRG----GYNTFL--AKVSPPRLNGKKVGVLGTRSPHRPNPIGLTMVKLESVDMKTNSLTVTGIDLIDGTPVIDVKPVIPYDTPSSLMVPDWV 805
            R GRT AE+ LR   +    + G+   AIG V SPF DRRGTPRQG++ P A G VVL P  V    LEGL+ FSH+W++F+FHENTN                                    H+ +P RG    G   F   AKV+PPRL GKKVGV  TRSPHRPNP+GLT+ +L SV+    ++ + G+DL+DGTPV+D+KP IPYD    L+VP WV
Sbjct:   33 RAGRTAAEKALRERVQAKHASEGYQMHAIGTVASPFADRRGTPRQGTVAPAAEGSVVLAPD-VPQATLEGLEGFSHVWVLFIFHENTNL-----------------------------------HQKQPRRGSSASGGPRFHCPAKVTPPRL-GKKVGVFSTRSPHRPNPVGLTVCRLLSVNTAKRTVVLGGVDLVDGTPVLDLKPYIPYDAVDQLVVPAWV 217          
BLAST of mRNA_C-tenellus_contig11581.1.3 vs. uniprot
Match: A0A6G0XRC5_9STRA (TsaA-like domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRC5_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.380e-48
Identity = 100/267 (37.45%), Postives = 155/267 (58.05%), Query Frame = 2
Query:  158 RKGRTEAERRLRSSKKEHEQAHGFIFRAIGDVRSPFPDRRGTPRQGSITPHARGKVVLYPRAVGYPALEGLDKFSHIWLIFVFHENTNANVNGVITAELGSNETKKDTSLCDSEVKSTETVQVEHRSRPTRGGYNTFLAKVSPPRLNGKKVGVLGTRSPHRPNPIGLTMVKLESVDMKTNSLTVTGIDLIDGTPVIDVKPVIPYDTPSSLMVPDWVYE--DLVLRRVVFSEEASTGVQACLDNLGRKRKINFYNDAQGFKEAVTEVI 952
            R GRT AER  R   ++     G+ F  IG V S F DRRGTPRQG++ P ++ ++ L   ++   ALE LD+FSH+W++FVFHENTN                                      ++ +     T+ AK++PPRL GKKVG+  TR+PHRPN IGLT+VK+++V  +   + ++G DL+DGTPV+DVKP +PYD  +SL+ P+WV E  D+V R V+F++EA   ++  + ++       FY++++  +E + +++
Sbjct:   68 RSGRTNAERDARLLAQKQLDKEGYNFEPIGTVSSCFADRRGTPRQGALVPGSKARIEL-KSSISPTALECLDQFSHMWVLFVFHENTNL-------------------------------------AKVSTHKIATYPAKIAPPRLGGKKVGLFSTRTPHRPNSIGLTVVKVDAVSGQF--VDISGHDLVDGTPVLDVKPYVPYDQVNSLVCPEWVAEKHDIVARPVIFTDEALAQLELAMPSM------RFYSNSRELRETIEQIL 288          
BLAST of mRNA_C-tenellus_contig11581.1.3 vs. uniprot
Match: A0A1V9YJM3_9STRA (TsaA-like domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YJM3_9STRA)

HSP 1 Score: 172 bits (436), Expect = 6.100e-47
Identity = 102/266 (38.35%), Postives = 147/266 (55.26%), Query Frame = 2
Query:  158 RKGRTEAERRLRSSKKEHEQAHGFIFRAIGDVRSPFPDRRGTPRQGSITPHARGKVVLYPRAVGYPALEGLDKFSHIWLIFVFHENTNANVNGVITAELGSNETKKDTSLCDSEVKSTETVQVEHRSRPTRGGYNTFLAKVSPPRLNGKKVGVLGTRSPHRPNPIGLTMVKLESVDMKTNSLTVTGIDLIDGTPVIDVKPVIPYDTPSSLMVPDWVYEDL-VLRRVVFSEEASTGVQACLDNLGRKRKINFYNDAQGFKEAVTEVI 952
            R GRT AER  R+  ++     G+ F  IG V S F DRRGTPRQGS+ P ++ ++ L   +V   +LE LD+FSH+W++FVFHENTN                                      S+       T+ AK++PPRL GKKVG+  TR+PHRPN IGLT+VKL++V  +   + ++G DL+ GTP++DVKP +PYD    L+ PDWV E   V R + F++EA   ++A +      +K+ FY      K A+ +++
Sbjct:   56 RHGRTNAERDARAIAQQQLDRDGYNFEPIGTVESCFADRRGTPRQGSLVPASKARIQLKV-SVPPASLECLDQFSHVWVLFVFHENTNL-------------------------------------SKVAAQKKTTYPAKIAPPRLGGKKVGLFSTRTPHRPNSIGLTVVKLDAVHDRV--IEISGHDLVHGTPILDVKPYVPYDKVPDLVCPDWVNERHDVPRPIEFTDEALEQLEAAVAG----KKLEFYQTLDELKAAIAQIL 277          
BLAST of mRNA_C-tenellus_contig11581.1.3 vs. uniprot
Match: F0W0C9_9STRA (Uncharacterized protein AlNc14C4G572 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0C9_9STRA)

HSP 1 Score: 171 bits (432), Expect = 4.430e-46
Identity = 103/265 (38.87%), Postives = 147/265 (55.47%), Query Frame = 2
Query:  158 RKGRTEAERRLRSSKKEHEQAHGFIFRAIGDVRSPFPDRRGTPRQGSITPHARGKVVLYPRAVGYPALEGLDKFSHIWLIFVFHENTNANVNGVITAELGSNETKKDTSLCDSEVKSTETVQVEHRSRPTRGGYNTFLAKVSPPRLNGKKVGVLGTRSPHRPNPIGLTMVKLESVDMKTNSLTVTGIDLIDGTPVIDVKPVIPYDTPSSLMVPDWVYEDLVLRRVVFSEEASTGVQACLDNLGRKRKINFYNDAQGFKEAVTEVI 952
            R GRT AER+L    +E +   G+ F AI +V S F DRRGTPRQG + P +R  ++ + R+V   +LE LD+FSHIW++F FH NTN +              K+D                        G  N+F AK++PPRL G KVGVL TRSPHRPN +GL++VK+E+V +    ++V+G DL+  TPV+D+KP IP D       P WV E  V   VVF+  A   ++A +D     R+  FY+     ++A+ +++
Sbjct:   69 RTGRTSAERKLCLRIQEVQAKTGYRFHAIANVDSCFSDRRGTPRQGHLVPSSRA-IIRFQRSVPPASLECLDEFSHIWVLFTFHGNTNLS--------------KQD------------------------GAANSFTAKIAPPRLGGMKVGVLSTRSPHRPNSLGLSLVKIENVCVTKREISVSGHDLVHQTPVLDIKPYIPADCKPDFRCPTWVSESGVDCPVVFAPVALEALRAIMD----ARRCRFYDKLADAQDAIKQML 290          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11581.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBW4_ECTSI1.600e-8753.57TsaA-like domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KWP5_9PHAE2.630e-5951.38TsaA-like domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YKX6_9STRA5.420e-5747.33TsaA-like domain-containing protein n=1 Tax=Tribon... [more]
K3X2B7_GLOUD1.600e-5038.58TsaA-like domain-containing protein n=1 Tax=Globis... [more]
A0A2D4BFG7_PYTIN1.730e-4940.07TsaA-like domain-containing protein n=1 Tax=Pythiu... [more]
T0PS40_SAPDV1.860e-4937.83TsaA-like domain-containing protein n=2 Tax=Saprol... [more]
A0A7S2WIR7_9STRA6.030e-4945.95Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6G0XRC5_9STRA1.380e-4837.45TsaA-like domain-containing protein n=1 Tax=Aphano... [more]
A0A1V9YJM3_9STRA6.100e-4738.35TsaA-like domain-containing protein n=1 Tax=Achlya... [more]
F0W0C9_9STRA4.430e-4638.87Uncharacterized protein AlNc14C4G572 n=1 Tax=Albug... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11581contigC-tenellus_contig11581:51..4690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBW4
PFAMsUPF0066
Model size1180
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons8
Evalue2.68e-31
EggNOG OGsCOG1720@1|root,KOG2942@2759|Eukaryota
DescriptiontRNA (adenine-N6-)-methyltransferase activity
Cds size474
COG categoryV
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11581.1.3prot_C-tenellus_contig11581.1.3Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11581 96..2604 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.641372-UTR-C-tenellus_contig11581:50..951680789184.641372-UTR-C-tenellus_contig11581:50..95Choristocarpus tenellus KU2346UTRC-tenellus_contig11581 51..95 -
1680789184.7279131-UTR-C-tenellus_contig11581:2604..26831680789184.7279131-UTR-C-tenellus_contig11581:2604..2683Choristocarpus tenellus KU2346UTRC-tenellus_contig11581 2605..2683 -
1680789184.7365363-UTR-C-tenellus_contig11581:3125..33851680789184.7365363-UTR-C-tenellus_contig11581:3125..3385Choristocarpus tenellus KU2346UTRC-tenellus_contig11581 3126..3385 -
1680789184.7487898-UTR-C-tenellus_contig11581:3777..38441680789184.7487898-UTR-C-tenellus_contig11581:3777..3844Choristocarpus tenellus KU2346UTRC-tenellus_contig11581 3778..3844 -
1680789184.7589605-UTR-C-tenellus_contig11581:4105..41551680789184.7589605-UTR-C-tenellus_contig11581:4105..4155Choristocarpus tenellus KU2346UTRC-tenellus_contig11581 4106..4155 -
1680789184.7675104-UTR-C-tenellus_contig11581:4387..45191680789184.7675104-UTR-C-tenellus_contig11581:4387..4519Choristocarpus tenellus KU2346UTRC-tenellus_contig11581 4388..4519 -
1680789184.7758808-UTR-C-tenellus_contig11581:4617..46901680789184.7758808-UTR-C-tenellus_contig11581:4617..4690Choristocarpus tenellus KU2346UTRC-tenellus_contig11581 4618..4690 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.6546957-CDS-C-tenellus_contig11581:95..4401680789184.6546957-CDS-C-tenellus_contig11581:95..440Choristocarpus tenellus KU2346CDSC-tenellus_contig11581 96..440 -
1680789184.6707668-CDS-C-tenellus_contig11581:1928..19791680789184.6707668-CDS-C-tenellus_contig11581:1928..1979Choristocarpus tenellus KU2346CDSC-tenellus_contig11581 1929..1979 -
1680789184.6809247-CDS-C-tenellus_contig11581:2526..26041680789184.6809247-CDS-C-tenellus_contig11581:2526..2604Choristocarpus tenellus KU2346CDSC-tenellus_contig11581 2527..2604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11581.1.3

>prot_C-tenellus_contig11581.1.3 ID=prot_C-tenellus_contig11581.1.3|Name=mRNA_C-tenellus_contig11581.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=158bp
MVKLESVDMKTNSLTVTGIDLIDGTPVIDVKPVIPYDTPSSLMVPDWVYE
DLVLRRVVFSEEASTGVQACLDNLGRKRKINFYNDAQGFKEAVTEVIEYL
QVYSIECEVFQRIRQCAAGFLHSRTHFTQSACIQMFLCPLRIALMRYSQH
HLSLKIL*
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mRNA from alignment at C-tenellus_contig11581:51..4690-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11581.1.3 ID=mRNA_C-tenellus_contig11581.1.3|Name=mRNA_C-tenellus_contig11581.1.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4640bp|location=Sequence derived from alignment at C-tenellus_contig11581:51..4690- (Choristocarpus tenellus KU2346)
TGTTGGAATTATTCAACTTCTTCGACGACGAAGTCAAGAAATCGCCATCT TGACATCACGTCTCGAAGCCGAGGTGAGGGAGACACGAGTCAAGGTTCTG GGGCTATTACCATGCCCCCAGCCTTTAATGAAACGAAGCGTGTACTGACC TTTATGTGTGGACACATGCAGAAACAAGAGAAGGTTCGCCATGGAAAAGA AATTGCAGACCTCGCAAAGCGCCTTGAGAGAGAGGCTGGTCAGCGGACTG AGGAGAGGAAGGGTCGCACAGAGGCTGAACGACGGCTTCGTTCGTCAAAG AAAGTAAGATCCTTGGGGTTTTACTGCATAGCGTTAATCCTCTCTTCGAT TCATGGTTGCGCACGGATGGAGAACAGGCAGACCACAGTAGTCAGTCATG TCCTGGCAAACCCTTGACACCCTGGCAATCACTTCAGCAGAACTACTTTC GAGATGAGAGTTGTGTTTCGTAAGGGCTAAAAAATGTTGAAACCCTAATC CCCCATTGCCATTGCTAATCGAATTCTTGTGTCAGGAACATGAGCAGGCC CATGGTTTCATCTTCAGGGCCATAGGCGATGTAAGGTAAGAGGACGTCAC TTTCTTGGAAGGTTTTACTCAGCACTACGAGCAGATCAACGGTGTGGCCG TTGGCTGATGAAGAATACTTACTGCGCAATATCTACACCCATGGTAGCAG GCCTTCCATGGGCTAGGGGCGGTGTCACCTTGGATCGTCACTTGAAGTAC TCCGATTGTGGTCGAAGCGGTGTCATTTCTTGCAACCATCCCCCGAACAT TTACATCCGACCGCTCTCCACTCTACCGTTCTTTGCACCCTCTCAGGTCT CCCTTCCCAGATCGAAGAGGAACACCTCGACAGGGTAGCATCACACCACA TGCAAGGGGAAAGGTGAGCATGTATGTTACGCCAGAGTACCATGATATGA GACCAGCCGAATCTACCATTGCCAGCTTGAGGAGGCAACTGGCTACTGGA CCAGCTAATTGACCCTTCACTTATCTTTTTTCTACACTCTACCCTAGCTC AGAGATACCACCACTGAAGTTGCTCTCTGGGTTGAGCACCTTGCTGCACC TTTCTGATCAGTGTAGCAACCTCAAGTTGAGATGAACCTATCAACTGTTG TTCTGTGTACATGTTTCAATGTTCATGTATAGTAGAGAACGGAAAGTGAT CATATAATGCGCCCTCCCATAGCTGCATGCATGTAGTGCTCTCTGTAGTT ATTCTGTCAAGACATGCAAAAAGTCATTGATCCCATGCCACCGATACACG AACAGGTGGTGCTGTATCCAAGGGCCGTGGGTTATCCTGCCCTTGAAGGC CTGGATAAGTTCTCTCACATTTGGCTAATCTTTGTTTTTCACGAAAACAC TAATGCCAATGTAAATGGTGTGATTACTGCAGAGCTGGGGTCAAATGAAA CTAAGAAGGATACTAGCCTTTGTGACAGTGAGGTGAAAAGCACAGAGACT GTGCAGGTGGAGCATAGATCAAGACCCACCAGAGGGGGGTACAACACATT TTTGGCCAAAGTGAGGTGTGAGATGTTATAAACAACTGCAAGTTAGTTGT GTGGGCGGTGTGAAGTCATGCGTATAGTACTCTTAGGCTTTTCTGTCCGA GGACCATCCTCTTAAGCAGAGTGTAACCATCTAAAAAGGTGGTCGATTTT GGCTGTTTGAGTTCTCTTGGATGGTATCACTCAGCACCTTTAGGAAATAC GCAGGTATGTGGAAGACTCTATCAAGCGTAAGGCAGTGTATTATCAAGTA TCACGCTTCTCTGGTGTGCTTAGTGTCATTGTCACCATGCAGTACTTATT TTTCCAAATTCTTGTCAAGGAACAAAGCCATACTGCTCTGTGCTTGGGCT TCATCTGTGGCTGTCACCCCAAATACTCCTTTCCTACCTGCCAGTCCTCA CTCAATGTTGCCCTCACCCCACATGTCTGAATTGTTATTATTGTCACATG CTGTCAGCCCTCCTCGCTTGAATGGCAAGAAGGTCGGTGTTCTTGGCACC CGGAGCCCTCACAGACCAAACCCTATTGGCTTGACCATGGTCAAGCTGGA GAGTGTGGATATGAAGACAAACAGCCTAACAGTCACTGGAATCGATCTCA TTGATGGCACGCCGGTACAAAGCAGATTAGTCTTGCCTCTCAGTTGTTCC AACCCCGCAATTTTCTCAACTTCAGTCTGACACCCAGTCCTAAACTCCCA GGTTGCATGTCTTTTTTGCCCTACCTTATGAATACCAAAGTACTACCTAG CTAAGACCTTGCATCAAGTTTCACTGCCTGTAACAATTTAGGAGACTAAG AATGTTGGGCAGAACCTTTGGAGGTTAGGATATCCCCTGCTGGAATAACC TGACAGCTTCATATTGGTGGCATACTGTGTGGTCTTGTTGCCCTGAACCT CAGAATGCTCATATCACAGACTTCTACTCTATTCAACTGATCTCCAATGC ATCTCCTATTGACTATTGAGTGCTTCATTGAGACATTTTGCCCTGTATAC AACCTCTACAAGTTTGTTGGCATCAAATGCAAGAGTTTCCTCTATTGTGG GGATCTTTCCTTCTCAACTCTCATGATTGGTATGTACTGTGTCTCGTTTT GTGCCAACCCCTTCTTAACCTGTTGAAACCTCCACATGATTTATGCTCCT TGCATGCACAGGTGATTGATGTCAAACCAGTGATTCCATATGACACACCT TCTTCACTCATGGTGAGTTATTCCACAGCAACAAACCTACTGTGTGGCAG TGAGTGGAGTCATATAAGAGGGGGGGGTGTGACTTTAGAAGAAGTTTGTC AGCTTAAGCCGGTGTTCACTATGCTCAAGTCATCTATACCACAAGGCAGC CATAGAGGCTCCTAGAACACAATAACACCCCCCCATTGAATGTTATCACT CAATGCATACCAATGACCTTCCACTCGTAACCACCAAACACATAATGTAA CTACCAGGCCTTGTTTGAACCCACCATAGTACCTCCTCAGAGGTATGGTC ACAGTTTCACACAAGAAGAGAGCAATATGATATTATGTACAGCTTCAAAG GAGCAAGCAAAGCTTGAGCAGTAGAGTTCTAGTAGGGCAAAGTAGAATAG TGGCCAAATGTCAGTTATCGCTGAGGCCACTGTTCATTCTTGTTGATGTC ATACTGCTTGAGAATATGAGTTCCTTGCCTTAGCCTTTTATACGAGGAGG GAGGATGCTATTGCTGTTCAATTAAGAGCATAACTGTGGTCCTATCTGGC TATTCTAGGGCAGACAGGGCTGTGGGCTTCTGTAGTGGAGAAATCTTCAA GATTTTTTTTTTGTTGAAGTGGACCTGTCCTTGGGTGCTCAAGCTCCGGA GGTGCCAACTCTGGGCTTTGGTGTCAAGCTATTGAGATATCTCTATATAC CATTAAGGCAATAGTCCTTTCCCTGCCTCAGCCTTCTTACATTATTTCAA TATCTCGACAAAAGCTGATATTGGGGCAGTATCCACCTGACAACATGGAC AACCACCTCACTAATCCCTTCCCTTCCTACTCCTCAAGTGACCACCTCCG TTTTCGTGTTTTCCCATTGAGCCCACCTAGGTCCCCTTCTCACACTCTGC CATTTGTTCTCCTGTTGTGCTTGAGAGAGTTGGGGGAGCAGCCCGGTTAA GGTTTAACCCCAAAACCTTTAATATCTCAGGAGATTGAGGTTCCATCCTT TGACCAGAGCCATTGGTCTCATATAAGACTATTGCCTTGGTAGTATAGTG GTATCTCAACATGTTGACATATTCAGAGTCATGTCACTGCTCGGGTCCAT CCTTGGGCCATCATCCCAACCTACTCCTGAGTGGTCACCTTAATCTTTGC ATTTCCCTTTCAGCCTTCCAGGAACACATCACGCTCTTTCTTTATCCTCC CAGTGTGGGGAGTTGAGAAGAAGTCCAGCTAGATTTTTATCCCACAACCT CTAACTTGCCAGTGCAGGGTATCTGCCTCATTGGTATAATGGTCCCTCAA TATTTTGACATCTGGTATGCTGCATGAGGTATTATTTGTAGTGCATTAGA AATCATAGCACCGAGAAGCCTTGGGTGGTACAATCTTGCATTATTGATAG TTAAAACGGCCGAAGAACTCCTTGCTGTCCAGACTGATTGCAGACAGTTA ATACCCCTCTCACCTTGTTGTTGTGCCCACTTACCCCTTTTTTCATTCAG GTACCTGACTGGGTGTATGAAGACTTGGTCTTGCGTCGTGTTGTATTTTC AGAAGAAGCATCCACCGGGGTGCAGGCTTGCTTAGATAATTTGGGGCGGA AGAGGAAGATTAACTTCTACAATGATGCTCAAGGTTTCAAGGAAGCTGTA ACTGAGGTGATAGAGTACCTTCAAGTATATTCAATAGAGTGTGAAGTGTT CCAGAGGATAAGACAATGTGCTGCAGGTTTCCTCCATTCACGAACACATT TTACTCAGAGCGCTTGCATACAAATGTTCTTGTGCCCTTTGCGCATTGCA CTAATGCGTTATTCTCAGCATCATCTGTCCTTGAAAATATTATAGATTAA AATTTTGGGTACATAATGAACAATGTACATCTGTTGTACA
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Coding sequence (CDS) from alignment at C-tenellus_contig11581:51..4690-

>mRNA_C-tenellus_contig11581.1.3 ID=mRNA_C-tenellus_contig11581.1.3|Name=mRNA_C-tenellus_contig11581.1.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=474bp|location=Sequence derived from alignment at C-tenellus_contig11581:51..4690- (Choristocarpus tenellus KU2346)
ATGGTCAAGCTGGAGAGTGTGGATATGAAGACAAACAGCCTAACAGTCAC
TGGAATCGATCTCATTGATGGCACGCCGGTGATTGATGTCAAACCAGTGA
TTCCATATGACACACCTTCTTCACTCATGGTACCTGACTGGGTGTATGAA
GACTTGGTCTTGCGTCGTGTTGTATTTTCAGAAGAAGCATCCACCGGGGT
GCAGGCTTGCTTAGATAATTTGGGGCGGAAGAGGAAGATTAACTTCTACA
ATGATGCTCAAGGTTTCAAGGAAGCTGTAACTGAGGTGATAGAGTACCTT
CAAGTATATTCAATAGAGTGTGAAGTGTTCCAGAGGATAAGACAATGTGC
TGCAGGTTTCCTCCATTCACGAACACATTTTACTCAGAGCGCTTGCATAC
AAATGTTCTTGTGCCCTTTGCGCATTGCACTAATGCGTTATTCTCAGCAT
CATCTGTCCTTGAAAATATTATAG
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