mRNA_C-tenellus_contig11581.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11581.1.2
Unique NamemRNA_C-tenellus_contig11581.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11581.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11581contigC-tenellus_contig11581:3850..4689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size511
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionUncharacterised domain UPF0066
Ec32 orthologEc-20_003510.1
Cds size258
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.5743496-UTR-C-tenellus_contig11581:3849..41011680789184.5743496-UTR-C-tenellus_contig11581:3849..4101Choristocarpus tenellus KU2346UTRC-tenellus_contig11581 3850..4101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.5838554-CDS-C-tenellus_contig11581:4101..41551680789184.5838554-CDS-C-tenellus_contig11581:4101..4155Choristocarpus tenellus KU2346CDSC-tenellus_contig11581 4102..4155 -
1680789184.6025977-CDS-C-tenellus_contig11581:4387..45191680789184.6025977-CDS-C-tenellus_contig11581:4387..4519Choristocarpus tenellus KU2346CDSC-tenellus_contig11581 4388..4519 -
1680789184.6111724-CDS-C-tenellus_contig11581:4617..46891680789184.6111724-CDS-C-tenellus_contig11581:4617..4689Choristocarpus tenellus KU2346CDSC-tenellus_contig11581 4618..4689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11581.1.2prot_C-tenellus_contig11581.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11581 4102..4689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11581.1.2

>prot_C-tenellus_contig11581.1.2 ID=prot_C-tenellus_contig11581.1.2|Name=mRNA_C-tenellus_contig11581.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=86bp
VGIIQLLRRRSQEIAILTSRLEAEKQEKVRHGKEIADLAKRLEREAGQRT
EERKGRTEAERRLRSSKKEHEQAHGFIFRAIGDVR*
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mRNA from alignment at C-tenellus_contig11581:3850..4689-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11581.1.2 ID=mRNA_C-tenellus_contig11581.1.2|Name=mRNA_C-tenellus_contig11581.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=840bp|location=Sequence derived from alignment at C-tenellus_contig11581:3850..4689- (Choristocarpus tenellus KU2346)
GTTGGAATTATTCAACTTCTTCGACGACGAAGTCAAGAAATCGCCATCTT
GACATCACGTCTCGAAGCCGAGGTGAGGGAGACACGAGTCAAGGTTCTGG
GGCTATTACCATGCCCCCAGCCTTTAATGAAACGAAGCGTGTACTGACCT
TTATGTGTGGACACATGCAGAAACAAGAGAAGGTTCGCCATGGAAAAGAA
ATTGCAGACCTCGCAAAGCGCCTTGAGAGAGAGGCTGGTCAGCGGACTGA
GGAGAGGAAGGGTCGCACAGAGGCTGAACGACGGCTTCGTTCGTCAAAGA
AAGTAAGATCCTTGGGGTTTTACTGCATAGCGTTAATCCTCTCTTCGATT
CATGGTTGCGCACGGATGGAGAACAGGCAGACCACAGTAGTCAGTCATGT
CCTGGCAAACCCTTGACACCCTGGCAATCACTTCAGCAGAACTACTTTCG
AGATGAGAGTTGTGTTTCGTAAGGGCTAAAAAATGTTGAAACCCTAATCC
CCCATTGCCATTGCTAATCGAATTCTTGTGTCAGGAACATGAGCAGGCCC
ATGGTTTCATCTTCAGGGCCATAGGCGATGTAAGGTAAGAGGACGTCACT
TTCTTGGAAGGTTTTACTCAGCACTACGAGCAGATCAACGGTGTGGCCGT
TGGCTGATGAAGAATACTTACTGCGCAATATCTACACCCATGGTAGCAGG
CCTTCCATGGGCTAGGGGCGGTGTCACCTTGGATCGTCACTTGAAGTACT
CCGATTGTGGTCGAAGCGGTGTCATTTCTTGCAACCATCCCCCGAACATT
TACATCCGACCGCTCTCCACTCTACCGTTCTTTGCACCCT
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Coding sequence (CDS) from alignment at C-tenellus_contig11581:3850..4689-

>mRNA_C-tenellus_contig11581.1.2 ID=mRNA_C-tenellus_contig11581.1.2|Name=mRNA_C-tenellus_contig11581.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=258bp|location=Sequence derived from alignment at C-tenellus_contig11581:3850..4689- (Choristocarpus tenellus KU2346)
GTTGGAATTATTCAACTTCTTCGACGACGAAGTCAAGAAATCGCCATCTT
GACATCACGTCTCGAAGCCGAGAAACAAGAGAAGGTTCGCCATGGAAAAG
AAATTGCAGACCTCGCAAAGCGCCTTGAGAGAGAGGCTGGTCAGCGGACT
GAGGAGAGGAAGGGTCGCACAGAGGCTGAACGACGGCTTCGTTCGTCAAA
GAAAGAACATGAGCAGGCCCATGGTTTCATCTTCAGGGCCATAGGCGATG
TAAGGTAA
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