mRNA_C-tenellus_contig1158.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1158.5.1
Unique NamemRNA_C-tenellus_contig1158.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1158.5.1 vs. uniprot
Match: D8LH71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH71_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.400e-10
Identity = 66/249 (26.51%), Postives = 108/249 (43.37%), Query Frame = 1 
Query:   16 MLGEAPTTQS*TMSGPPREISPVNAREIVDFFAFMRCTDEVKTLISRYAQGSDDGFVVVGSNFHRRLQIICVEDSLEQALLTVKSDPENAPGDFDTLLKSFEDL--------------------------VALSCIRAQLREAEGLPHLKELSDISPVRYLETVDQHLPAEPSDTDT--ELEAYNLQKERRNLTDIYADSSRKVSAVKMQSIFMVRSIQSLVSYFSQRTRPLCNVQAKCPQTLCELNRD 678
            M+GE    +S T  G P+++    A +++   A  +   E + ++SR    SDD  VVVGS+   RL I+ +++ LE ALL       + P  F+ LL+ F+ L                           ALSC  AQ R     P   +   +    Y++ VD+ +P    D D   + E  +  KERRNLTD++ +    VS++K++++     + +        TR L       P+ L   + D
Sbjct:    1 MVGELGDGESAT-DGIPQQL----AHDLIHLMAHQKMVVETQHILSRCH--SDDAIVVVGSDVKLRLDILAIDEELENALLNHDQKDPSKP--FERLLERFDILHKSLANTDSAIITERWPQMRAALVRQAALSCFLAQQRN-HARPEPFDWGSVCTKAYIKVVDRLIPQVDFDLDALDDEEQMSASKERRNLTDVFKEKHCSVSSIKLRTLLKENKVGTFEKDMKAFTRALDQALLPRPKLLTMYSND 239
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1158.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH71_ECTSI1.400e-1026.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1158contigC-tenellus_contig1158:7646..8653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size742
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-24_000790.1
Cds size639
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.5068572-UTR-C-tenellus_contig1158:7645..76961680789184.5068572-UTR-C-tenellus_contig1158:7645..7696Choristocarpus tenellus KU2346UTRC-tenellus_contig1158 7646..7696 +
1680789184.5447822-UTR-C-tenellus_contig1158:8601..86531680789184.5447822-UTR-C-tenellus_contig1158:8601..8653Choristocarpus tenellus KU2346UTRC-tenellus_contig1158 8602..8653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.5204246-CDS-C-tenellus_contig1158:7696..79721680789184.5204246-CDS-C-tenellus_contig1158:7696..7972Choristocarpus tenellus KU2346CDSC-tenellus_contig1158 7697..7972 +
1680789184.53468-CDS-C-tenellus_contig1158:8238..86011680789184.53468-CDS-C-tenellus_contig1158:8238..8601Choristocarpus tenellus KU2346CDSC-tenellus_contig1158 8239..8601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1158.5.1prot_C-tenellus_contig1158.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1158 7697..8601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1158.5.1

>prot_C-tenellus_contig1158.5.1 ID=prot_C-tenellus_contig1158.5.1|Name=mRNA_C-tenellus_contig1158.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=213bp
MSGPPREISPVNAREIVDFFAFMRCTDEVKTLISRYAQGSDDGFVVVGSN
FHRRLQIICVEDSLEQALLTVKSDPENAPGDFDTLLKSFEDLVALSCIRA
QLREAEGLPHLKELSDISPVRYLETVDQHLPAEPSDTDTELEAYNLQKER
RNLTDIYADSSRKVSAVKMQSIFMVRSIQSLVSYFSQRTRPLCNVQAKCP
QTLCELNRDSWC*
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mRNA from alignment at C-tenellus_contig1158:7646..8653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1158.5.1 ID=mRNA_C-tenellus_contig1158.5.1|Name=mRNA_C-tenellus_contig1158.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1008bp|location=Sequence derived from alignment at C-tenellus_contig1158:7646..8653+ (Choristocarpus tenellus KU2346)
GTTTCTGTTTTCAAAATGTTGGGTGAAGCACCTACAACACAGTCTTAAAC
GATGTCTGGACCGCCTCGAGAGATATCGCCTGTAAATGCTCGTGAAATCG
TAGATTTCTTTGCTTTCATGCGATGCACAGACGAAGTCAAGACCTTGATC
AGTCGCTATGCACAAGGGAGTGATGACGGCTTCGTCGTGGTAGGCAGCAA
TTTTCATCGAAGGCTGCAGATTATCTGCGTTGAGGATTCTCTTGAGCAAG
CCCTGTTGACCGTCAAGAGTGACCCAGAGAACGCCCCGGGTGATTTTGAC
ACCCTTCTAAAGAGCTTTGAGGATTTGGTGAGTGTTGAACAGCTTAGTTG
ATGTCACGAAGGGGCGCTCAGTGTGCAACCATCTCAAAATGTGTTTGTCT
CAACGTAATCTCCAGCGCGCGCAGATATCAGGGCTGGAGGGAGCTGGAGA
TGTGGACTGGTTTGATCCGAGGATGAAAATTTTCCGTCAGGTGCTGTGTT
TTGTCTCATGTATGGTGTGTGGAGTGTTTCTTTGTGCTGTACTGTCGCTT
GTCACTTGATGCATCGACGTTGTCAACCTACTCAACACTTCAGGTCGCAC
TTTCTTGCATTCGTGCACAACTGCGTGAAGCGGAGGGACTCCCGCACCTT
AAAGAACTGAGTGACATTTCCCCGGTCCGCTACCTGGAGACAGTGGATCA
ACACCTGCCAGCTGAGCCTTCGGACACCGACACCGAGCTGGAAGCGTACA
ACTTACAGAAGGAGAGACGGAACCTGACTGACATTTACGCTGACAGTAGC
CGAAAAGTCAGTGCCGTCAAGATGCAGAGCATTTTCATGGTAAGATCCAT
CCAATCCCTGGTTTCATACTTCTCCCAACGAACACGTCCGCTCTGCAATG
TACAAGCCAAGTGTCCCCAAACTTTATGTGAATTGAATAGGGACAGTTGG
TGTTAAGGAGTCCTCAATCTGGTGGTATTTCAGGCCTGTGACTTATGGGC
TCAATCCC
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Coding sequence (CDS) from alignment at C-tenellus_contig1158:7646..8653+

>mRNA_C-tenellus_contig1158.5.1 ID=mRNA_C-tenellus_contig1158.5.1|Name=mRNA_C-tenellus_contig1158.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=639bp|location=Sequence derived from alignment at C-tenellus_contig1158:7646..8653+ (Choristocarpus tenellus KU2346)
ATGTCTGGACCGCCTCGAGAGATATCGCCTGTAAATGCTCGTGAAATCGT
AGATTTCTTTGCTTTCATGCGATGCACAGACGAAGTCAAGACCTTGATCA
GTCGCTATGCACAAGGGAGTGATGACGGCTTCGTCGTGGTAGGCAGCAAT
TTTCATCGAAGGCTGCAGATTATCTGCGTTGAGGATTCTCTTGAGCAAGC
CCTGTTGACCGTCAAGAGTGACCCAGAGAACGCCCCGGGTGATTTTGACA
CCCTTCTAAAGAGCTTTGAGGATTTGGTCGCACTTTCTTGCATTCGTGCA
CAACTGCGTGAAGCGGAGGGACTCCCGCACCTTAAAGAACTGAGTGACAT
TTCCCCGGTCCGCTACCTGGAGACAGTGGATCAACACCTGCCAGCTGAGC
CTTCGGACACCGACACCGAGCTGGAAGCGTACAACTTACAGAAGGAGAGA
CGGAACCTGACTGACATTTACGCTGACAGTAGCCGAAAAGTCAGTGCCGT
CAAGATGCAGAGCATTTTCATGGTAAGATCCATCCAATCCCTGGTTTCAT
ACTTCTCCCAACGAACACGTCCGCTCTGCAATGTACAAGCCAAGTGTCCC
CAAACTTTATGTGAATTGAATAGGGACAGTTGGTGTTAA
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