mRNA_C-tenellus_contig11566.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11566.1.1
Unique NamemRNA_C-tenellus_contig11566.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11566.1.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 361 bits (926), Expect = 6.510e-99
Identity = 194/429 (45.22%), Postives = 256/429 (59.67%), Query Frame = 1
Query:  412 KEATGVATNLLELCLTFGIPLSIRSDAGGEFT*DIMNRLCRWLKVPINYGPTDNSRGQGGVEKTGGLLLEALSELCVKWPDR*DEYVSPACWAQHTTPDPSDPLNPTPFRVFFGRDPRTQIDTAIPKVDGDVEVGRLDSFIEQRRQNFREVREVLERRTSTIQKYRERTNALIARSSPGLGSKPGDLVLVEEADSSIHGERLDETRLARKLVHERWTGPWTVKKISQQRISITVKLLGRQTRTRNVPASYVKPLHVRSIHLRRSFQEEYAQLVWGSDLGLSEQSVVATPIYTLTDRKAVLSP---SYVWHWEYRGKYQYGELPD*VTEKEAMDSFTLLQLDVFHALW-DLYNPDTSPR--STDTYRQEKPLSREDALCLFPKGATVKKSWEDEKGRDKWYIGTAFDFKSPYWRVPFNDGDWEELNKSEM 1680
            KE  GV+  LLEL L FG+PLSIR D G E T +IM  LCRWLKV +++GP ++ RGQG VE+ G +L + LSELC  WP R DEYV+ A WA    PD S P N +P+++ FGR PRT +D   P +D       L+S +E+ R+   EV + L +R +   ++R+  NA I+R+SPG  S+ GD VLV E+ S++H + +       KL H+ +TGPW V  + +  +S TV+L GRQ R R V AS +K  + R + LR  F++E++  VWG DLGL E SVVA P+YTL DR+        S  W WEYRGKYQ G     +TE    DSF+ LQLDVFHALW D +  D +PR     T  + +  +RE AL  FP    V K   D+        G   DF  PYWRV F+DGDWEE  + E+
Sbjct: 1261 KETVGVSRKLLELILIFGLPLSIRCDPGRENTSEIMEHLCRWLKVSLDFGPANHPRGQGTVERMGAVLAQLLSELCQAWPQRWDEYVAIATWAHRMQPDESLPGNVSPYQMLFGRAPRTPLDQLSPSLDNSGSALGLESSVEETRRKHIEVTDALRKRQAEKNRHRDLQNARISRASPGAKSRVGDKVLVRESASTLHRDGVHP-----KLAHDHFTGPWVVVNVVRMGLSFTVRLHGRQVRQRTVVASDMKQFYSRPLDLRLPFEDEFSHFVWGPDLGLVEDSVVAAPLYTLVDRRTTQGAGGASTAWAWEYRGKYQDGTTSSWLTEDTVKDSFSPLQLDVFHALWEDYHGSDVAPRPPGAPTRGEREVATREAALQEFPLNTEVAKELRDKDDNIILSRGKVCDFYDPYWRVEFSDGDWEEFTRREL 1684          
BLAST of mRNA_C-tenellus_contig11566.1.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 340 bits (873), Expect = 5.100e-92
Identity = 189/431 (43.85%), Postives = 254/431 (58.93%), Query Frame = 1
Query:  406 RQKEATGVATNLLELCLTFGIPLSIRSDAGGEFT*DIMNRLCRWLKVPINYGPTDNSRGQGGVEKTGGLLLEALSELCVKWPDR*DEYVSPACWAQHTTPDPSDPLNPTPFRVFFGRDPRTQIDTAIPKVDGDVEVGRLDSFIEQRRQNFREVREVLERRTSTIQKYRERTNALIARSSPGLGSKPGDLVLVEEADSSIHGERLDETRLARKLVHERWTGPWTVKKISQQRISITVKLLGRQTRTRNVPASYVKPLHVRSIHLRRSFQEEYAQLVWGSDLGLSEQSVVATPIYTLTDRKAVLSPSYVWH-WEYRGKYQYGELPD*VTEKEAMDSFTLLQLDVFHALWDLYNPDTSPRST-DTYRQEKPLSREDALCLFPKGATVKKSWEDEKGRDKWYIGTAFDFKSPYWRVPFNDGDWEELNKSEMSRFS 1692
            + K+A GVA  ++ELCLT+G+P ++R D G EF  +++  LCRWL+  I +G  D+ RGQG VE+ GG L E L+ELC  WPDR DEYVSPA W + T PD S P N TPF + FGR PRT +D+ +P  D   +   LD+F+E+R+QN REVR  LE+R       R + NA I RSS G+G     LVLV E +S  H +        RKL H+ +TGPW V  I Q  +S+ V + GR+ R+R V  + VKP H+R + LR S  EE+AQ  WG D  L   +  +  + T+ D + V   S +   WEY+GK   G + D + E+    SFT LQLD F ALW LY P  +  S  D+ +   PLSR  AL +FP G T +K    E        G  +D+ SPYWRV + DG+WEEL++ E+ R +
Sbjct: 1459 KTKQAVGVARVVVELCLTYGVPKTVRCDGGPEFGAEVVKHLCRWLRASIVFGAADHPRGQGAVERLGGWLQELLAELCRFWPDRWDEYVSPAMWIKRTLPDTSLPSNMTPFELLFGRKPRTSLDSLVPLTDEMDQERGLDNFVERRKQNLREVRLALEKRQELRVAARAKANASIDRSSAGVGVMKESLVLVREFESCRHRDHR-----GRKLQHDLYTGPWKVTGIIQPGLSVEVMMHGRKKRSRRVSTADVKPFHLRELPLRHSLAEEFAQHAWGPDFKLPPGAKESLGLVTIADCRRVQPASGMRTVWEYKGKSGNGVVSDWLPEETMRRSFTPLQLDCFVALWHLYFPQLANASAPDSVKPRTPLSRAQALHVFPIGFTFQK----ELAGGILLQGQVYDYVSPYWRVRYTDGNWEELSRRELERLA 1880          
BLAST of mRNA_C-tenellus_contig11566.1.1 vs. uniprot
Match: A0A6H5JMP6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP6_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 4.090e-85
Identity = 178/431 (41.30%), Postives = 243/431 (56.38%), Query Frame = 1
Query:  412 KEATGVATNLLELCLTFGIPLSIRSDAGGEFT*DIMNRLCRWLKVPINYGPTDNSRGQGGVEKTGGLLLEALSELCVKWPDR*DEYVSPACWAQHTTPDPSDPLNPTPFRVFFGRDPRTQIDTAIPKVDGDVEVGRLDSFIEQRRQNFREVREVLERRTSTIQKYRERTNALIARSSPGLGSKPGDLVLVEEADSSIHGERLDETRLARKLVHERWTGPWTVKKISQQRISITVKLLGRQTRTRNVPASYVKPLHVRSIHLRRSFQEEYAQLVWGSDLGLSEQSVVATPIYTLTDRKAVLSPSYVWHWEYRGKYQYGELPD*VTEKEAMDSFTLLQLDVFHALWDLYNP----DTSPRSTDTYRQEKPLSREDALCLFPKGATVKKSWEDEKGRDKWYIGTAFDFKSPYWRVPFNDGDWEELNKSEMSRFS 1692
            K+A GVA  L+E CLTFG+P +IR D G EF  +++  LCRWL+  I +G  D+ RGQG VE+ GG L E  ++LC  WPDR D YVSP+ W + T PD + P +  PF+  F R PRT +D+ +P  D     G LD+F+++R+QN REVR  LERR       R + NA I RSS G+      LVLV E +S  + +R       R+L H+ +TGP  V  + +  + + V L GR+ RTR V  + VKP H+    LR S  +E+A   WG+D+ L   +       ++ D +   S + V  WEYRGK   G + D ++E   + SFT LQLD F ALW LY+P    D  P S    +   PLSR +AL LFP   T++K  +          G  FDF  PYWRV ++D +WEEL + E+ R S
Sbjct:  457 KQAVGVARVLVEQCLTFGVPNTIRCDGGSEFGAEVVTHLCRWLRTDIVFGAADHPRGQGSVERLGGWLQELPAKLCRSWPDRWDGYVSPSIWIKRTLPDTALPSHMIPFKRLFDRKPRTTLDSLVPLTDETGTEGGLDNFVKRRKQNLREVRIALERRHELRVAARAKANATIERSSAGVAVGRNSLVLVRETESRRYRDRR-----GRELQHDLYTGPSKVTDVIRPGLIVEVSLHGRRKRTRRVSTADVKPFHLSPPSLRLSISDEFAAYAWGADVKLPSGAAELLEFVSIADCRRSRSRTQVV-WEYRGKLGSGAVSDWLSEDVMLRSFTPLQLDGFVALWHLYHPQQANDLPPVSV---KPRAPLSRAEALKLFPIDFTLRKELDGGVNLQ----GQVFDFLQPYWRVGYSDQNWEELARRELERLS 874          
BLAST of mRNA_C-tenellus_contig11566.1.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 4.290e-85
Identity = 178/430 (41.40%), Postives = 241/430 (56.05%), Query Frame = 1
Query:  406 RQKEATGVATNLLELCLTFGIPLSIRSDAGGEFT*DIMNRLCRWLKVPINYGPTDNSRGQGGVEKTGGLLLEALSELCVKWPDR*DEYVSPACWAQHTTPDPSDPLNPTPFRVFFGRDPRTQIDTAIPKVDGDVEVGRLDSFIEQRRQNFREVREVLERRTSTIQKYRERTNALIARSSPGLGSKPGDLVLVEEADSSIHGERLDETRLARKLVHERWTGPWTVKKISQQRISITVKLLGRQTRTRNVPASYVKPLHVRSIHLRRSFQEEYAQLVWGSDLGLSEQSVVATPIYTLTDRKAVLSPSY--VWHWEYRGKYQYGELPD*VTEKEAMDSFTLLQLDVFHALW-DLYNPDTSPRSTDTYR--QEKPLSREDALCLFPKGATVKKSWEDEKGRDKWYIGTAFDFKSPYWRVPFNDGDWEELNKSEM 1680
            + KE  GV+  LL L L FG+P SIR D G + T +IM   CRWLKV +++GP ++ RGQG VE+ G +L + LSELC  WP R +EYV+ A W      D S P N +P ++ FGR PRT +D   P +D       L+  +E+ R    +V E L +R +   + R   NA  +R+SPG  +K GD VLV E+ S++H +         KL H+ +TGPW V  +    +S TV+L  R  R R V AS +KP + R + +R +F++E+A  VW  DLGL E SVVA P+YTL DR+   +      W WEY+GKYQ G   D +TE    DSF+ LQL +FHAL  D +  D +PR        + +  +RE AL  FP    V +   D  G      G   DF  PYWRV F+D DWEEL + E+
Sbjct: 1805 KTKERVGVSRKLLGLLLIFGLPTSIRCDPGRDNTSEIMEHPCRWLKVSLDFGPANHPRGQGTVERMGAVLAQLLSELCQAWPRRWEEYVTVATWTHRMQQDESLPGNASPCQMLFGRSPRTPLDQLAPSLDNSGAALGLEPSVEETRHKHIQVTEALRKRQAEKNRQRNLQNARFSRTSPGAKAKEGDKVLVRESASTLHRDGTHP-----KLAHDHFTGPWVVITVVCAGLSFTVRLNERHVRQRTVAASDMKPFYSRPLDVRLAFEDEFAHYVWEPDLGLVEDSVVAAPLYTLFDRRTTQAGGAPTAWAWEYKGKYQEGTPSDWLTEDTVKDSFSPLQLGIFHALCEDYHGTDVAPRPPGALSRGEHEVATREAALKEFPLDTEVARELLDSDGNVVVSRGKVCDFYDPYWRVKFSDDDWEELTRREL 2229          
BLAST of mRNA_C-tenellus_contig11566.1.1 vs. uniprot
Match: A0A6H5KNQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ8_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 3.950e-81
Identity = 173/427 (40.52%), Postives = 237/427 (55.50%), Query Frame = 1
Query:  412 KEATGVATNLLELCLTFGIPLSIRSDAGGEFT*DIMNRLCRWLKVPINYGPTDNSRGQGGVEKTGGLLLEALSELCVKWPDR*DEYVSPACWAQHTTPDPSDPLNPTPFRVFFGRDPRTQIDTAIPKVDGDVEVGRLDSFIEQRRQNFREVREVLERRTSTIQKYRERTNALIARSSPGLGSKPGDLVLVEEADSSIHGERLDETRLARKLVHERWTGPWTVKKISQQRISITVKLLGRQTRTRNVPASYVKPLHVRSIHLRRSFQEEYAQLVWGSDLGLSEQSVVATPIYTLTDRKAVLSPSY----VWHWEYRGKYQYGELPD*VTEKEAMDSFTLLQLDVFHALWDLYNPD--TSPRSTDTYRQEKPLSREDALCLFPKGATVKKSWEDEKGRDKWYIGTAFDFKSPYWRVPFNDGDWEELNKS 1674
            K+A GV++ LLEL L FG+P S+R+D G E    +M  LC WLK                         EALS LC  WP R D+YV  A W    TPD S P   +P+++ FG  PR+ ID     +DG      L+  +E++       +E+L +R   + K  ER NA I R SPG  ++ GD VLV E   S++ + L       KL HE +TGPW V  +  +R+  TV++ GR+ R R V A+ VKP H R  HL+  +++E++ L+W +DLGL+  SV A P YTL  R+  + P       W WEYRG+YQ G   D +TE EA DSF+ LQLDVFHALW+L++P   T P    T  + +  SR+ AL +FP+G  V + + D +GR K +    +D+  PYWRV + DGDWE L KS
Sbjct: 1262 KDALGVSSKLLELLLIFGMPFSVRADMGSENIARVMKHLCNWLK-------------------------EALSLLCKAWPQRWDDYVPVATWIHWVTPDLSLPGGASPYQILFGLPPRSHIDLLAQPLDGASFGQGLEITVEEQHHM---TQEILAKRQEALTKQSERHNAKIGRESPGAKAQVGDFVLVRETPVSLYRDSLHP-----KLAHEHFTGPWKVVNVLPERLCFTVQMNGRRVRQRRVVAADVKPFHQRPAHLQLEYEDEFSHLIWSADLGLAGTSVAAVPPYTLMARR--VGPGKGGADAWAWEYRGRYQDGAQSDWITEDEARDSFSPLQLDVFHALWELHHPSDATRPTGEPTRGEREVESRDRALEMFPRGTEVGRVFMDAEGRSKTFKAKVYDYCDPYWRVEYPDGDWEALTKS 1653          
BLAST of mRNA_C-tenellus_contig11566.1.1 vs. uniprot
Match: A0A6H5JV25_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV25_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 8.080e-63
Identity = 119/256 (46.48%), Postives = 159/256 (62.11%), Query Frame = 1
Query:  406 RQKEATGVATNLLELCLTFGIPLSIRSDAGGEFT*DIMNRLCRWLKVPINYGPTDNSRGQGGVEKTGGLLLEALSELCVKWPDR*DEYVSPACWAQHTTPDPSDPLNPTPFRVFFGRDPRTQIDTAIPKVDGDVEVGRLDSFIEQRRQNFREVREVLERRTSTIQKYRERTNALIARSSPGLGSKPGDLVLVEEADSSIHGERLDETRLARKLVHERWTGPWTVKKISQQRISITVKLLGRQTRTRNVPASYVKPL 1173
            + K+A GVA   +ELCLT+G+P ++R D G EF  +++  LCRWL+  I +G TD+ RGQG VE+ GG L E L+ELC  WPDR DEYVSPA W + T PD S P N TPF + FGR PRT +D+ +P  D   +   LD+F+E+R+QN REVR  LE+R       R + NA I RSS G+G     LVLV E++SS H +        RKL H+ +TGPW V  I Q  +S+ V + GR     +V   Y++P+
Sbjct:   74 KTKQAVGVARVAVELCLTYGVPKTVRCDGGPEFGAEVVKHLCRWLRANIVFGATDHPRGQGAVERLGGWLQELLAELCRSWPDRWDEYVSPAMWIKRTLPDTSLPSNMTPFELLFGRKPRTSLDSLVPLTDEMDQERGLDNFVERRKQNLREVRLALEKRQELRVAARAKANASIERSSAGVGVMKDSLVLVRESESSRHRDHR-----GRKLQHDLYTGPWKVTGIIQPGLSVEVMMHGR-----SVAEGYLRPM 319          
BLAST of mRNA_C-tenellus_contig11566.1.1 vs. uniprot
Match: A0A6H5JAJ3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ3_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.630e-52
Identity = 121/278 (43.53%), Postives = 164/278 (58.99%), Query Frame = 1
Query:  868 EVLERRTSTIQKYRERTNALIARSSPGLGSKPGDLVLVEEADSSIHGERLDETRLARKLVHERWTGPWTVKKISQQRISITVKLLGRQTRTRNVPASYVKPLHVRSIHLRRSFQEEYAQLVWGSDLGLSEQSVVATPIYTLTDRKAVLSPSYV--WHWEYRGKYQYGELPD*VTEKEAMDSFTLLQLDVFHALWDLY---NPDTSPRSTDTYRQEKPLSREDALCLFPKGATVKKSWEDEKGRDKWYIGTAFDFKSPYWRVPFNDGDWEELNKSEMSR 1686
            E+L  +     ++RER NA +AR SPG  +  G+ VLV+E  +++H +         +L H+ + GPW V ++   R+S  V+L GR+ R R V A   KP H R   LR SF++E+A ++W +DLGL++ SVVA P+YTL DR+AV        W WEY+  YQ G L    TE+E  DSF+ LQLDVFHAL++L+   N    P    T  + +  SRE AL LFP G  V + + D  G  K +  TAFD   PYWRV + DGDWEEL KSEM +
Sbjct: 1662 EILTYQHEAQNRHRERHNARVARESPGAKTAVGNYVLVKEPAATLHRDGHHP-----ELTHDHYIGPWKVTEVIHDRLSFAVQLKGRRIRRRKVAAPDFKPYHGRPQDLRLSFEDEFAYVMWSADLGLADISVVAVPLYTLVDRRAVRGADNAPTWTWEYQDHYQDGALSPWPTEEEVGDSFSPLQLDVFHALYELFYGENGAPRPAGPPTRGEREVASREQALQLFPVGTQVGREFADSDGHLKVFKATAFDCCDPYWRVEYPDGDWEELTKSEMDK 1934          
BLAST of mRNA_C-tenellus_contig11566.1.1 vs. uniprot
Match: A0A6H5K948_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K948_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 2.190e-52
Identity = 133/379 (35.09%), Postives = 194/379 (51.19%), Query Frame = 1
Query:  604 GGLLLEALSELCVKWPDR*DEYVSPACWAQHTTPDPSDPLNPTPFRVFFGRDPRTQIDTAIPKVDGDVEVGRLDSFIEQRRQNFREVREVLERRTSTIQKYRERTNALIARSSPGLGSKPGDLVLVEEADSSIHGERLDETRLA-RKLVHERWTGPWTVKKISQ----------------------------------QRISITVKLLGRQTRTRNVPASYVKPLHVRSIHLRRSFQEEYAQLVWGSDLGLSEQSVVATPIYTLTDRKAVLSPSY-VWHWEYRGKYQYGELPD*VTEKEAMDSFTLLQLDVFHALWDLYNPDTSPR--STDTYRQEKPLSREDALCLFPKGATVKKSWEDEKGRDKWYIGTAFDFKSPY 1626
            GG L +ALS LC  WP R D+YV  A W    TPDP+ P   +P+++ FGR PR+ +D     +D       ++  +E +    +E+    +R+   + K RER NA IA  SPG  ++ GD        S         T +A  +L HE +TGPWTV  +                                     R+  TV+L GR+ R R V A+ +KP H R  HL+  F++E++ ++W + LGL++ SV+A P+YTLT R+     S   W WEYRG+YQ G     + E EA DSF+ LQLDVFHALW+L++PD+ P+        Q K  SRE AL +FP G  V + + + +G+ + +    +D+  PY
Sbjct:  777 GGWLQKALSLLCKAWPQRWDDYVPVATWIHRVTPDPALPGGASPYQILFGRPPRSHVDFFAQPLDSTSFGQGVERTVEDQYHLTQEI--PAKRQEEVLTKRRERHNARIAPESPGAKTQIGDWCWSTRPPSP-------STEMACTRLAHEHFTGPWTVVNVLXLVHETPVSLYRDGLHPKXXXXXXXXXXXXXXXLLARLCFTVQLNGRRIRQRRVVAADIKPFHRRPTHLQLPFEDEFSHVIWSASLGLTDTSVLAVPLYTLTARRVGQGKSAGSWAWEYRGRYQDGIQSSWIPEAEARDSFSPLQLDVFHALWELHHPDSEPQPPGEPARGQRKVESRERALEMFPCGTVVGRIFTNAEGQSEVFKSKVYDYCDPY 1146          
BLAST of mRNA_C-tenellus_contig11566.1.1 vs. uniprot
Match: A0A6H5KZY5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY5_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 4.440e-39
Identity = 102/257 (39.69%), Postives = 140/257 (54.47%), Query Frame = 1
Query:  412 KEATGVATNLLELCLTFGIPLSIRSDAGGEFT*DIMNRLCRWLKVPINYGPTDNSRGQGGVEKTGGLLLEALSELCVKWPDR*DEYVSPACWAQHTTPDPSDPLNPTPFRVFFGRDPRTQIDTAIPKVDGDVEVGRLDSFIEQRRQNFREVREVLERRTSTIQKYRERTNALIARSSPGLGSKPGDLVLVEEADSSIHGERLDETRLARKLVHERWTGPWTVKKISQQRISITVKLLGRQTRTRNVPASYVKPLHVR 1182
            K+A GVA  ++ELCLT+G+P ++R D G EF  +++  LCRWL+  I +G  D+ RGQG VE+ GG L E L++LC  W DR D +VSPA W + T PD S P N TPF    G        TA  +    + V + DS     R    E+R             R + NA I RSS G+G     LVLV E++SS H +        R+L H+ +TGPW V  + Q  +S+ V + GR+ R+R V  + V P H+R
Sbjct: 1464 KQAVGVARVVVELCLTYGVPKTVRCDGGPEFGAEVVKHLCRWLRANIVFGAADHPRGQGSVERLGGWLQEMLAKLCRSWSDRWDVFVSPAMWIKRTLPDTSLPSNMTPFEFLNGDS------TASWRGASKISV-KYDS---PSRNGMNELRVAA----------RAKANASIERSSAGVGDVKDSLVLVGESESSRHRDHR-----GRELQHDLYTGPWKVTGVVQPGLSVEVMMHGRKKRSRRVSTADVNPFHLR 1695          
BLAST of mRNA_C-tenellus_contig11566.1.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 6.380e-37
Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 1
Query:  412 KEATGVATNLLELCLTFGIPLSIRSDAGGEFT*DIMNRLCRWLKVPINYGPTDNSRGQGGVEKTGGLLLEALSELCVKWPDR*DEYVSPACWAQHTTPDPSDPLNPTPFRVFFGRDPRTQIDTAIPKVDGDVEVGRLDSFIEQRRQNFREV 864
             +A GVA  ++ELCLT+G+P ++R D G EF   ++  LCRWL+  I +G  D+ RGQG VE+ GG L E L+ELC  WPDR DEYVSPA W + T PD S P   TPF   FGR PRT +D+ +P  D   +   +D+F+E+R+ N REV
Sbjct:  678 NQAVGVARVVVELCLTYGVPKTVRCDEGPEFGARLVKHLCRWLRANIVFGAADHPRGQGSVERLGGWLQELLAELCRPWPDRWDEYVSPAMWIKRTLPDTSLPTYMTPFEFLFGRKPRTSLDSLVPLTDEMDQERGVDNFVERRKHNLREV 828          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11566.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNP4_9PHAE6.510e-9945.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE5.100e-9243.85RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JMP6_9PHAE4.090e-8541.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3V4_9PHAE4.290e-8541.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNQ8_9PHAE3.950e-8140.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV25_9PHAE8.080e-6346.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAJ3_9PHAE1.630e-5243.53RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K948_9PHAE2.190e-5235.09Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KZY5_9PHAE4.440e-3939.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K9B2_9PHAE6.380e-3749.67Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11566contigC-tenellus_contig11566:947..5207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size4261
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.880095-UTR-C-tenellus_contig11566:946..13891680789183.880095-UTR-C-tenellus_contig11566:946..1389Choristocarpus tenellus KU2346UTRC-tenellus_contig11566 947..1389 -
1680789183.9122431-UTR-C-tenellus_contig11566:1785..52071680789183.9122431-UTR-C-tenellus_contig11566:1785..5207Choristocarpus tenellus KU2346UTRC-tenellus_contig11566 1786..5207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.8989685-CDS-C-tenellus_contig11566:1389..17851680789183.8989685-CDS-C-tenellus_contig11566:1389..1785Choristocarpus tenellus KU2346CDSC-tenellus_contig11566 1390..1785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11566.1.1prot_C-tenellus_contig11566.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11566 1390..1785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11566.1.1

>prot_C-tenellus_contig11566.1.1 ID=prot_C-tenellus_contig11566.1.1|Name=mRNA_C-tenellus_contig11566.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=132bp
MGLKGDQGRNGVVLTRFGVEKKRGEDSMGGFEVGGLEVVLAIMECFPELL
PDAPLMAFREGERWRVITRGQATCVLRRIVKELKLRPEEYALNSGMIGGV
TRLATMGVSETVIQREGRRKWSAFMAYVRAN*
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mRNA from alignment at C-tenellus_contig11566:947..5207-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11566.1.1 ID=mRNA_C-tenellus_contig11566.1.1|Name=mRNA_C-tenellus_contig11566.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4261bp|location=Sequence derived from alignment at C-tenellus_contig11566:947..5207- (Choristocarpus tenellus KU2346)
AAGTAATTTCAGATTACTTTGATTAGTCATTCACGGAATAGAATTGATTT TGTGGCAATGACACCCCCTATGGTGTTTGAAGCTCACTCTCCTTTTCTTA CACCTTCCTTACACTTCATGTACAACCTGTTCTACATAATGAGGAAATAA TCGAGTTATTTACACGCACAAGTCTTGGGGACACCAAATTCTTTAACACG CAGGATTATGTTTTTTCCTGTGGCTGTCGCAGACGAAAGAGGACTAGGAG CGCACAAGTGGCAATGCTGCTAGCCAAGCTCCTGGAACCATGGGATTTAC TTGAGGTGGATATAAAAGATGTGGGGCACATCTCAGCAAAAGGCAACAAA TATCTAATAATTGTGATTGACAGGGCTTCGAGATTCCCTATTGCATTCCC AATGGCGTCAAAAGGAAGCAACTGGAGTAGCAACAAACTTGTTGGAATTA TGTCTTACATTTGGTATCCCATTGTCAATTCGTAGTGATGCAGGAGGAGA GTTCACATGAGATATAATGAATCGCCTTTGTCGTTGGCTGAAGGTCCCTA TCAATTACGGACCAACTGATAACTCGAGAGGACAAGGGGGAGTGGAAAAG ACGGGAGGTCTGCTTTTAGAAGCCCTGTCGGAACTATGTGTGAAGTGGCC AGATAGATAGGATGAGTATGTATCTCCGGCGTGTTGGGCACAACACACTA CTCCAGACCCATCTGACCCCCTCAACCCCACCCCATTCCGAGTCTTTTTT GGTCGTGATCCCCGCACTCAGATAGACACCGCCATACCCAAGGTAGATGG GGACGTAGAGGTTGGAAGACTGGATTCCTTTATTGAGCAACGCAGACAGA ACTTCAGGGAGGTACGAGAAGTCCTGGAGAGACGGACGTCCACAATACAG AAATACAGAGAAAGGACCAATGCTTTGATTGCTCGGTCTTCCCCAGGACT AGGATCTAAACCAGGTGACCTAGTTCTAGTAGAAGAAGCGGACAGCTCTA TCCATGGGGAAAGACTAGATGAGACAAGATTAGCCAGGAAGCTAGTCCAT GAAAGATGGACTGGACCATGGACTGTGAAGAAAATTTCACAACAGAGAAT TAGCATTACAGTCAAACTGCTAGGTAGGCAAACACGCACTCGTAATGTTC CTGCTTCTTATGTGAAACCCTTGCACGTAAGGTCCATCCATCTGAGACGT AGCTTCCAAGAGGAATATGCTCAACTAGTGTGGGGGTCGGACCTGGGTCT ATCAGAACAATCAGTGGTAGCAACTCCCATTTACACTCTCACTGATAGAA AAGCAGTATTGTCGCCATCCTACGTATGGCACTGGGAGTACCGGGGAAAG TATCAGTATGGAGAGTTGCCAGACTAGGTAACCGAGAAAGAGGCTATGGA TAGCTTCACCCTACTACAGTTAGATGTCTTCCATGCCCTCTGGGATCTCT ATAATCCAGACACGAGTCCACGTTCTACTGACACCTATCGCCAAGAAAAA CCCTTGTCTAGGGAAGATGCATTGTGCCTTTTCCCCAAAGGTGCCACTGT CAAGAAGTCATGGGAAGACGAGAAGGGAAGGGATAAGTGGTACATAGGTA CAGCTTTTGACTTCAAGTCACCTTACTGGAGGGTACCGTTTAATGATGGG GATTGGGAGGAATTGAACAAAAGCGAAATGAGCCGCTTCTCCCCAAAATG ATCCAACAGATATCCACTATACACCCAGAAGGCAAGGTACGTTAGGACTA ACCGATTCATGTAAGAACACAGGAATCAAACATCGACAGTCCTAGTCCCC ACAGAACGTAAGGCAGGAGAAGTCAGAAACATGGAGTAACCCATATTAGC CCAGGTAGTAGTTTACATAGGGTGCTTTTGTTTCTCTTTTTTTTTCTCTC CTTTCCCTTTTCTTATTTTTTTGCATTATTAATATTTATTTATCCCTTCT TGTTTTTTAATTTGTTTTTTTTCATTTATTATTTGTTTTCTTTCCTTTTC TCTCTGTCAGCTCTGGTACCTCCGTATAGTTGCACTTACTTTGCTGTACA TTGCTTAAGTTCTTCCTCATCTTTCCCTCCCTCCTCTTTCCCTCCCTCCT CTTTCCCTCCCTCCTTTTTTTATTTTTTTATTTTCTTTTGCGTTTTTCAT GGAGACAGACGTTGATGTTATTGCCTGTGTTACGCACTAGCAGCTGTCAG TATGCTTAGTGCTTGGGGGGCAAGAGACAGGCAATGATCAGATGATACTT GACACCTTAGGGTAGCTGTACTTTAGAAAGAGTAAATGTATACTCCGATT TGGCTAGATACAGACAGATTTTTCCAAGTCAATAGGGATATATGTTTTGG ACCTAGTAGGAGTCAGGTGTTTTTTCATTATTTCTTTCTCCTTCCCACGG GATGAACTGAGGTGATTAAAGATATCTATTGAATCAAATGATCTTAGAGG GTAGAGCCACGTCCATTTGGGGGTCGAAATGCAATGTTGTGATTTTGATG TAATTTTCGCTATCGTGTTTGATAGGAAGTGTCAATATCTATGTTTCCGA CACAAATCTTTCATAACGTATACATTTTACCTAACATGGGAAGCCAAGCC CCACAAATGGACAAACAGGGAAAAAATCGTACCCTCTAAGATAGCTTCAC TCTATTACCTTCACCAGTGACAATTGCTTGTGGTAAGCGTGAAACATGTG TTGCTAGTTCACACTGGGGGGCATGCTACAGGTGAATAGCGTGAGCATTT CTTTCTGCGTGCCAAAATGCGCGAACAGTATACATACGTAAGAATTCATG CAAGAGGAACTTTGAATTGAAAGAAGATGCAGAGTAAGATTAGAAATCTG CATAATCTCACAGAATAGATTTCAATTCTTGAAAGTTGCACAATAAAGAT TGATGGTTGAAGTATCTACATAGCAGTTTGCAGACTTCATTTAACTCTTT GTCTGTAGAAAGGTGGTGGATGAAAGTTAAAAACAGACTGAAGGCTCACC ACAACCTTCAGTTCTTGATCTTACCTCTTTCGATAAAGCGAAAAGTGAGA CATTGACTGAGCTAAGCATCCACTGACACCGTATGTGGTTATCATCTGTG GACCTCCCTCGTAGCGTCGTTTTAAGGTCGTTGGATTTGAGTTGCATATC CTGTGAAGGTGAGTTCTGAGGGGTGCCTGTAACAAATGATCGTAGAAACA AAGCACTGTACTGAAATGTTAGGAAGGGAGGGTGAATTGACAAGGCTAGG ATTGGGGTTCTCGCTCTTTTCTTAGCTAGAGCATCAGAGCTATGAGTTTA TGATGAAGGGGAGGGGGTGCATGGTGAGTTTGCGGTAAGGAGAAGGGATG TAGTATGGAGGAGAGGGAGGAGAGACTACGGTGGGAGGATAGACACCAAG CAGAAAAGTTGAGGTAACATTAATGGGGTTAAAAGGAGACCAGGGCAGGA ACGGAGTAGTGTTGACAAGGTTTGGAGTGGAGAAGAAAAGAGGGGAAGAT AGTATGGGAGGCTTTGAGGTGGGAGGCCTTGAGGTGGTACTAGCAATCAT GGAATGCTTCCCAGAGCTCCTCCCTGATGCCCCACTGATGGCTTTCAGGG AGGGAGAGAGGTGGAGGGTGATAACGAGGGGCCAAGCAACATGTGTTCTG AGAAGAATAGTAAAGGAGCTCAAGCTGAGACCAGAAGAGTATGCCCTGAA TTCGGGTATGATAGGGGGAGTCACGAGGTTGGCAACCATGGGGGTATCAG AGACAGTAATACAGAGGGAAGGGAGAAGGAAGTGGAGTGCATTCATGGCA TATGTCAGGGCCAACTAGAGGGACCCGATGTGGGTTTCGGAGGGTCTGGT AGAGAGTAGGAAGGATTGGTTTCAACCAGGGCAGGAGGTACAGTTATAAA CTAGAAGAGAAATCAACCCTGAAGAGGAGGGAAGGTCAAGTTCGGGTGGG GTAGATGTCTCTAGCTCAAAGGCGTGGTATGAAGTGGACGATGAAGGGGT GTTCTTGGATTATTGTGGTGTGATGTTGAGTGGCGTGGGGTTGATTGGTG TAGAATGGTGTGGCGGAGTGGTAAATAAGGGACCCAAAGTATCTGAGAGG GGGGGGGGGCTCTACACCAAGGTGTCCATTTGGACCAAAATCAGGAAAAG TGCATTTACAGTATCCATCTGATGTATGCAACCAAATCACCGAAAAATCG CGACATGAAAAAATTGACCCCAAATAGACAGCAATCACCCCCTCCCAGAT GCTTTGAGCCA
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Coding sequence (CDS) from alignment at C-tenellus_contig11566:947..5207-

>mRNA_C-tenellus_contig11566.1.1 ID=mRNA_C-tenellus_contig11566.1.1|Name=mRNA_C-tenellus_contig11566.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=396bp|location=Sequence derived from alignment at C-tenellus_contig11566:947..5207- (Choristocarpus tenellus KU2346)
ATGGGGTTAAAAGGAGACCAGGGCAGGAACGGAGTAGTGTTGACAAGGTT
TGGAGTGGAGAAGAAAAGAGGGGAAGATAGTATGGGAGGCTTTGAGGTGG
GAGGCCTTGAGGTGGTACTAGCAATCATGGAATGCTTCCCAGAGCTCCTC
CCTGATGCCCCACTGATGGCTTTCAGGGAGGGAGAGAGGTGGAGGGTGAT
AACGAGGGGCCAAGCAACATGTGTTCTGAGAAGAATAGTAAAGGAGCTCA
AGCTGAGACCAGAAGAGTATGCCCTGAATTCGGGTATGATAGGGGGAGTC
ACGAGGTTGGCAACCATGGGGGTATCAGAGACAGTAATACAGAGGGAAGG
GAGAAGGAAGTGGAGTGCATTCATGGCATATGTCAGGGCCAACTAG
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